RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GOLGA6L22H0YM25 854 aa16.36■□□□□ 0.21
USP53-209ENST00000514665 HNRNPMP52272 730 aaKnown RBP eCLIP16.36■□□□□ 0.21
USP53-209ENST00000514665 ARID4BQ4LE39 1312 aaPredicted RBP16.35■□□□□ 0.21
USP53-209ENST00000514665 SRPK2P78362 688 aaKnown RBP16.34■□□□□ 0.21
USP53-209ENST00000514665 SMARCA4P51532 1647 aa16.34■□□□□ 0.21
USP53-209ENST00000514665 RALBP1Q15311 655 aa16.33■□□□□ 0.21
USP53-209ENST00000514665 ANKRD30AQ9BXX3 1397 aa16.33■□□□□ 0.2
USP53-209ENST00000514665 STK26Q9P289 416 aa16.32■□□□□ 0.2
USP53-209ENST00000514665 A0A0G2JS52 829 aa16.32■□□□□ 0.2
USP53-209ENST00000514665 SOX12O15370 315 aa16.32■□□□□ 0.2
USP53-209ENST00000514665 SPRYD3Q8NCJ5 442 aa16.32■□□□□ 0.2
USP53-209ENST00000514665 PDS5BQ9NTI5 1447 aa16.31■□□□□ 0.2
USP53-209ENST00000514665 ST20-MTHFSA0A0A6YYL1 179 aa16.31■□□□□ 0.2
USP53-209ENST00000514665 GLIPR1L2Q4G1C9 344 aa16.31■□□□□ 0.2
USP53-209ENST00000514665 PRKRIP1Q9H875 184 aaPredicted RBP16.3■□□□□ 0.2
USP53-209ENST00000514665 NLRP13Q86W25 1043 aa16.29■□□□□ 0.2
USP53-209ENST00000514665 CARMIL2Q6F5E8 1435 aa16.29■□□□□ 0.2
USP53-209ENST00000514665 MLECQ14165 292 aa16.29■□□□□ 0.2
USP53-209ENST00000514665 KANK1Q14678 1352 aa16.29■□□□□ 0.2
USP53-209ENST00000514665 U2AF1L5P0DN76 240 aaPredicted RBP16.27■□□□□ 0.2
USP53-209ENST00000514665 U2AF1Q01081 240 aaKnown RBP eCLIP16.27■□□□□ 0.2
USP53-209ENST00000514665 MS4A1P11836 297 aa16.26■□□□□ 0.19
USP53-209ENST00000514665 EFCAB2Q5VUJ9 269 aa16.26■□□□□ 0.19
USP53-209ENST00000514665 TCERG1O14776 1098 aaKnown RBP16.26■□□□□ 0.19
USP53-209ENST00000514665 LMOD2Q6P5Q4 547 aa16.26■□□□□ 0.19
USP53-209ENST00000514665 HSP90AB1P08238 724 aaKnown RBP16.25■□□□□ 0.19
USP53-209ENST00000514665 CCDC146Q8IYE0 955 aa16.25■□□□□ 0.19
USP53-209ENST00000514665 IGF1RP08069 1367 aa16.24■□□□□ 0.19
USP53-209ENST00000514665 KIF3BO15066 747 aa16.24■□□□□ 0.19
USP53-209ENST00000514665 CASC1Q6TDU7 716 aa16.24■□□□□ 0.19
USP53-209ENST00000514665 JPH4Q96JJ6 628 aa16.23■□□□□ 0.19
USP53-209ENST00000514665 CLUAP1Q96AJ1 413 aa16.23■□□□□ 0.19
USP53-209ENST00000514665 SLKQ9H2G2 1235 aaPredicted RBP16.23■□□□□ 0.19
USP53-209ENST00000514665 PTMAP06454 111 aaKnown RBP16.21■□□□□ 0.19
USP53-209ENST00000514665 GOLGA2Q08379 1002 aa16.21■□□□□ 0.19
USP53-209ENST00000514665 CCDC18Q5T9S5 1454 aa16.21■□□□□ 0.19
USP53-209ENST00000514665 APBB1O00213 710 aa16.21■□□□□ 0.18
USP53-209ENST00000514665 PLIN1O60240 522 aa16.2■□□□□ 0.18
USP53-209ENST00000514665 IPO9Q96P70 1041 aaKnown RBP16.2■□□□□ 0.18
USP53-209ENST00000514665 PHLDB1Q86UU1 1377 aa16.19■□□□□ 0.18
USP53-209ENST00000514665 HSCBQ8IWL3 235 aa16.19■□□□□ 0.18
USP53-209ENST00000514665 NUTM2DQ5VT03 806 aaPredicted RBP16.18■□□□□ 0.18
USP53-209ENST00000514665 CHMP4BQ9H444 224 aaKnown RBP16.18■□□□□ 0.18
USP53-209ENST00000514665 PANK3Q9H999 370 aa16.18■□□□□ 0.18
USP53-209ENST00000514665 NAP1L5Q96NT1 182 aaPredicted RBP16.18■□□□□ 0.18
USP53-209ENST00000514665 PNNQ9H307 717 aaKnown RBP16.18■□□□□ 0.18
USP53-209ENST00000514665 ZNF644Q9H582 1327 aaPredicted RBP16.17■□□□□ 0.18
USP53-209ENST00000514665 PLCB2Q00722 1185 aa16.16■□□□□ 0.18
USP53-209ENST00000514665 PDE3BQ13370 1112 aa16.16■□□□□ 0.18
USP53-209ENST00000514665 EXOC6Q8TAG9 804 aa16.16■□□□□ 0.18
USP53-209ENST00000514665 KIF21BO75037 1637 aa16.16■□□□□ 0.18
USP53-209ENST00000514665 ITPRIPQ8IWB1 547 aa16.15■□□□□ 0.18
USP53-209ENST00000514665 ZBED9Q6R2W3 1325 aa16.15■□□□□ 0.18
USP53-209ENST00000514665 MYBBP1AQ9BQG0 1328 aaKnown RBP16.15■□□□□ 0.18
USP53-209ENST00000514665 USP47Q96K76 1375 aa16.15■□□□□ 0.18
USP53-209ENST00000514665 FANCD2Q9BXW9 1451 aa16.14■□□□□ 0.18
USP53-209ENST00000514665 DNTTIP2Q5QJE6 756 aaKnown RBP16.14■□□□□ 0.17
USP53-209ENST00000514665 GZF1Q9H116 711 aaPredicted RBP16.14■□□□□ 0.17
USP53-209ENST00000514665 RRP7AQ9Y3A4 280 aaKnown RBP16.14■□□□□ 0.17
USP53-209ENST00000514665 OS9Q13438 667 aaPredicted RBP16.14■□□□□ 0.17
USP53-209ENST00000514665 SPAG9O60271 1321 aaKnown RBP16.13■□□□□ 0.17
USP53-209ENST00000514665 KIF15Q9NS87 1388 aa16.13■□□□□ 0.17
USP53-209ENST00000514665 RWDD1Q9H446 243 aaPredicted RBP16.13■□□□□ 0.17
USP53-209ENST00000514665 TRAK1Q9UPV9 953 aa16.13■□□□□ 0.17
USP53-209ENST00000514665 HDGFL2Q7Z4V5 671 aaPredicted RBP16.12■□□□□ 0.17
USP53-209ENST00000514665 TAOK2Q9UL54 1235 aa16.12■□□□□ 0.17
USP53-209ENST00000514665 IPO8O15397 1037 aaKnown RBP16.12■□□□□ 0.17
USP53-209ENST00000514665 SMC4Q9NTJ3 1288 aa16.11■□□□□ 0.17
USP53-209ENST00000514665 RSPH4AQ5TD94 716 aa16.11■□□□□ 0.17
USP53-209ENST00000514665 BCL2L13Q9BXK5 485 aa16.11■□□□□ 0.17
USP53-209ENST00000514665 FGD5Q6ZNL6 1462 aa16.11■□□□□ 0.17
USP53-209ENST00000514665 HAP1P54257 671 aaPredicted RBP16.1■□□□□ 0.17
USP53-209ENST00000514665 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
USP53-209ENST00000514665 SLC4A3P48751 1232 aa16.1■□□□□ 0.17
USP53-209ENST00000514665 KCNJ4P48050 445 aa16.1■□□□□ 0.17
USP53-209ENST00000514665 FGD6Q6ZV73 1430 aa16.1■□□□□ 0.17
USP53-209ENST00000514665 CENPJQ9HC77 1338 aaPredicted RBP16.09■□□□□ 0.17
USP53-209ENST00000514665 PDE4AP27815 886 aa16.09■□□□□ 0.17
USP53-209ENST00000514665 CCDC144AA2RUR9 1427 aa16.09■□□□□ 0.17
USP53-209ENST00000514665 ARAP1Q96P48 1450 aa16.09■□□□□ 0.17
USP53-209ENST00000514665 MFAP1P55081 439 aaKnown RBP16.08■□□□□ 0.17
USP53-209ENST00000514665 KIF7Q2M1P5 1343 aa16.08■□□□□ 0.16
USP53-209ENST00000514665 RRP1P56182 461 aaKnown RBP16.08■□□□□ 0.16
USP53-209ENST00000514665 CRBNQ96SW2 442 aa16.07■□□□□ 0.16
USP53-209ENST00000514665 WASHC2AQ641Q2 1341 aa16.06■□□□□ 0.16
USP53-209ENST00000514665 FGD1P98174 961 aa16.05■□□□□ 0.16
USP53-209ENST00000514665 APAF1O14727 1248 aa16.05■□□□□ 0.16
USP53-209ENST00000514665 CCDC7Q96M83 1385 aa16.05■□□□□ 0.16
USP53-209ENST00000514665 ZRSR1Q15695 479 aaKnown RBP16.05■□□□□ 0.16
USP53-209ENST00000514665 RTF1Q92541 710 aaKnown RBP16.05■□□□□ 0.16
USP53-209ENST00000514665 LRRC9Q6ZRR7 1453 aa16.05■□□□□ 0.16
USP53-209ENST00000514665 PMFBP1Q8TBY8 1022 aa16.04■□□□□ 0.16
USP53-209ENST00000514665 EIF3AQ14152 1382 aaKnown RBP16.04■□□□□ 0.16
USP53-209ENST00000514665 WASHC2CQ9Y4E1 1318 aa16.04■□□□□ 0.16
USP53-209ENST00000514665 UACAQ9BZF9 1416 aa16.03■□□□□ 0.16
USP53-209ENST00000514665 L1TD1Q5T7N2 865 aaKnown RBP16.03■□□□□ 0.16
USP53-209ENST00000514665 MYOM3Q5VTT5 1437 aa16.02■□□□□ 0.16
USP53-209ENST00000514665 NAP1L2Q9ULW6 460 aaPredicted RBP16.02■□□□□ 0.15
USP53-209ENST00000514665 ELL2O00472 640 aaPredicted RBP16.01■□□□□ 0.15
USP53-209ENST00000514665 HDGFP51858 240 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms