RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 AEBP2Q6ZN18 517 aaPredicted RBP19.83■□□□□ 0.77
LIMCH1-220ENST00000514190 CFDP1Q9UEE9 299 aaPredicted RBP19.83■□□□□ 0.77
LIMCH1-220ENST00000514190 ARAP3Q8WWN8 1544 aa19.79■□□□□ 0.76
LIMCH1-220ENST00000514190 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.79■□□□□ 0.76
LIMCH1-220ENST00000514190 TTC37Q6PGP7 1564 aa19.78■□□□□ 0.76
LIMCH1-220ENST00000514190 PLCH2O75038 1416 aa19.78■□□□□ 0.76
LIMCH1-220ENST00000514190 FAM50AQ14320 339 aaKnown RBP19.78■□□□□ 0.76
LIMCH1-220ENST00000514190 PCGF6Q9BYE7 350 aa19.78■□□□□ 0.76
LIMCH1-220ENST00000514190 NEO1Q92859 1461 aa19.78■□□□□ 0.76
LIMCH1-220ENST00000514190 EFCAB2Q5VUJ9 269 aa19.75■□□□□ 0.75
LIMCH1-220ENST00000514190 ZNF644Q9H582 1327 aaPredicted RBP19.75■□□□□ 0.75
LIMCH1-220ENST00000514190 TCOF1Q13428 1488 aaKnown RBP19.74■□□□□ 0.75
LIMCH1-220ENST00000514190 ZNF777Q9ULD5 760 aaPredicted RBP19.74■□□□□ 0.75
LIMCH1-220ENST00000514190 CDC42BPAQ5VT25 1732 aa19.73■□□□□ 0.75
LIMCH1-220ENST00000514190 ITSN2Q9NZM3 1697 aa19.73■□□□□ 0.75
LIMCH1-220ENST00000514190 PTPN23Q9H3S7 1636 aa19.72■□□□□ 0.75
LIMCH1-220ENST00000514190 CFAP74Q9C0B2 1584 aa19.71■□□□□ 0.75
LIMCH1-220ENST00000514190 PREX2Q70Z35 1606 aa19.71■□□□□ 0.75
LIMCH1-220ENST00000514190 KDM4FA0A1W2PPD8 638 aa19.7■□□□□ 0.74
LIMCH1-220ENST00000514190 ARHGAP5Q13017 1502 aa19.7■□□□□ 0.74
LIMCH1-220ENST00000514190 FANCAO15360 1455 aa19.69■□□□□ 0.74
LIMCH1-220ENST00000514190 MYO5CQ9NQX4 1742 aa19.68■□□□□ 0.74
LIMCH1-220ENST00000514190 CDC42BPBQ9Y5S2 1711 aa19.68■□□□□ 0.74
LIMCH1-220ENST00000514190 CAMSAP2Q08AD1 1489 aa19.67■□□□□ 0.74
LIMCH1-220ENST00000514190 AKNAQ7Z591 1439 aa19.66■□□□□ 0.74
LIMCH1-220ENST00000514190 ADGRL1O94910 1474 aa19.66■□□□□ 0.74
LIMCH1-220ENST00000514190 FRMPD1Q5SYB0 1578 aa19.66■□□□□ 0.74
LIMCH1-220ENST00000514190 RAPGEF3O95398 923 aa19.65■□□□□ 0.74
LIMCH1-220ENST00000514190 ITGAEP38570 1179 aa19.65■□□□□ 0.74
LIMCH1-220ENST00000514190 KIAA1107Q9UPP5 1409 aa19.65■□□□□ 0.74
LIMCH1-220ENST00000514190 HNRNPMP52272 730 aaKnown RBP eCLIP19.64■□□□□ 0.73
LIMCH1-220ENST00000514190 PLEKHH2Q8IVE3 1493 aa19.64■□□□□ 0.73
LIMCH1-220ENST00000514190 RSPH4AQ5TD94 716 aa19.63■□□□□ 0.73
LIMCH1-220ENST00000514190 RICTORQ6R327 1708 aa19.62■□□□□ 0.73
LIMCH1-220ENST00000514190 SAMD9LQ8IVG5 1584 aa19.62■□□□□ 0.73
LIMCH1-220ENST00000514190 DENND4BO75064 1496 aaPredicted RBP19.62■□□□□ 0.73
LIMCH1-220ENST00000514190 ABCC5O15440 1437 aa19.61■□□□□ 0.73
LIMCH1-220ENST00000514190 MBD5Q9P267 1494 aa19.6■□□□□ 0.73
LIMCH1-220ENST00000514190 PTPRKQ15262 1439 aa19.59■□□□□ 0.73
LIMCH1-220ENST00000514190 DAPK1P53355 1430 aa19.59■□□□□ 0.73
LIMCH1-220ENST00000514190 ARHGEF12Q9NZN5 1544 aa19.57■□□□□ 0.72
LIMCH1-220ENST00000514190 TSPY4P0CV99 314 aa19.56■□□□□ 0.72
LIMCH1-220ENST00000514190 TSPY10P0CW01 314 aa19.56■□□□□ 0.72
LIMCH1-220ENST00000514190 SCAPERQ9BY12 1400 aa19.56■□□□□ 0.72
LIMCH1-220ENST00000514190 ARHGEF5Q12774 1597 aa19.56■□□□□ 0.72
LIMCH1-220ENST00000514190 ABCC1P33527 1531 aa19.56■□□□□ 0.72
LIMCH1-220ENST00000514190 ZMYM4Q5VZL5 1548 aa19.56■□□□□ 0.72
LIMCH1-220ENST00000514190 DNMT1P26358 1616 aaKnown RBP19.55■□□□□ 0.72
LIMCH1-220ENST00000514190 ARHGEF40Q8TER5 1519 aa19.55■□□□□ 0.72
LIMCH1-220ENST00000514190 SYCP2Q9BX26 1530 aa19.55■□□□□ 0.72
LIMCH1-220ENST00000514190 CHIC2Q9UKJ5 165 aa19.54■□□□□ 0.72
LIMCH1-220ENST00000514190 CCDC141Q6ZP82 1450 aa19.54■□□□□ 0.72
LIMCH1-220ENST00000514190 POGZQ7Z3K3 1410 aa19.53■□□□□ 0.72
LIMCH1-220ENST00000514190 TRAPPC8Q9Y2L5 1435 aa19.52■□□□□ 0.72
LIMCH1-220ENST00000514190 AFAP1Q8N556 730 aa19.52■□□□□ 0.72
LIMCH1-220ENST00000514190 MAGI2Q86UL8 1455 aa19.5■□□□□ 0.71
LIMCH1-220ENST00000514190 ROCK1Q13464 1354 aa19.5■□□□□ 0.71
LIMCH1-220ENST00000514190 SHANK2Q9UPX8 1470 aa19.49■□□□□ 0.71
LIMCH1-220ENST00000514190 ZFYVE16Q7Z3T8 1539 aa19.49■□□□□ 0.71
LIMCH1-220ENST00000514190 C9orf84Q5VXU9 1444 aa19.48■□□□□ 0.71
LIMCH1-220ENST00000514190 RRP7BPQ9NSQ0 103 aa19.47■□□□□ 0.71
LIMCH1-220ENST00000514190 NCOA1Q15788 1441 aa19.46■□□□□ 0.71
LIMCH1-220ENST00000514190 YEATS2Q9ULM3 1422 aa19.46■□□□□ 0.71
LIMCH1-220ENST00000514190 ADGRL2O95490 1459 aa19.46■□□□□ 0.71
LIMCH1-220ENST00000514190 ZNF518AQ6AHZ1 1483 aa19.46■□□□□ 0.71
LIMCH1-220ENST00000514190 SPAG9O60271 1321 aaKnown RBP19.46■□□□□ 0.71
LIMCH1-220ENST00000514190 ANKRD30AQ9BXX3 1397 aa19.45■□□□□ 0.7
LIMCH1-220ENST00000514190 SETD5Q9C0A6 1442 aa19.45■□□□□ 0.7
LIMCH1-220ENST00000514190 HFM1A2PYH4 1435 aa19.44■□□□□ 0.7
LIMCH1-220ENST00000514190 ADAMTSL3P82987 1691 aa19.44■□□□□ 0.7
LIMCH1-220ENST00000514190 BCORL1Q5H9F3 1711 aa19.44■□□□□ 0.7
LIMCH1-220ENST00000514190 KDM5CP41229 1560 aa19.44■□□□□ 0.7
LIMCH1-220ENST00000514190 RTEL1-TNFRSF6BF6WH68 1400 aa19.43■□□□□ 0.7
LIMCH1-220ENST00000514190 MAST1Q9Y2H9 1570 aa19.43■□□□□ 0.7
LIMCH1-220ENST00000514190 ARID4BQ4LE39 1312 aaPredicted RBP19.43■□□□□ 0.7
LIMCH1-220ENST00000514190 CROCC2H7BZ55 1655 aa19.43■□□□□ 0.7
LIMCH1-220ENST00000514190 NAIPQ13075 1403 aa19.42■□□□□ 0.7
LIMCH1-220ENST00000514190 HRCP23327 699 aa19.42■□□□□ 0.7
LIMCH1-220ENST00000514190 HECW2Q9P2P5 1572 aa19.39■□□□□ 0.69
LIMCH1-220ENST00000514190 SIGLEC1Q9BZZ2 1709 aa19.39■□□□□ 0.69
LIMCH1-220ENST00000514190 ATP10AO60312 1499 aa19.38■□□□□ 0.69
LIMCH1-220ENST00000514190 RAB3GAP2Q9H2M9 1393 aa19.38■□□□□ 0.69
LIMCH1-220ENST00000514190 MLH3Q9UHC1 1453 aa19.38■□□□□ 0.69
LIMCH1-220ENST00000514190 MADDQ8WXG6 1647 aa19.37■□□□□ 0.69
LIMCH1-220ENST00000514190 KIF15Q9NS87 1388 aa19.37■□□□□ 0.69
LIMCH1-220ENST00000514190 MYT1LQ9UL68 1186 aa19.37■□□□□ 0.69
LIMCH1-220ENST00000514190 ADGBQ8N7X0 1667 aa19.36■□□□□ 0.69
LIMCH1-220ENST00000514190 PTPRMP28827 1452 aa19.35■□□□□ 0.69
LIMCH1-220ENST00000514190 DIP2CQ9Y2E4 1556 aa19.34■□□□□ 0.69
LIMCH1-220ENST00000514190 ATP7AQ04656 1500 aa19.34■□□□□ 0.69
LIMCH1-220ENST00000514190 ANKRD50Q9ULJ7 1429 aa19.33■□□□□ 0.68
LIMCH1-220ENST00000514190 PLXNC1O60486 1568 aa19.32■□□□□ 0.68
LIMCH1-220ENST00000514190 INO80Q9ULG1 1556 aaPredicted RBP19.32■□□□□ 0.68
LIMCH1-220ENST00000514190 ACIN1Q9UKV3 1341 aaKnown RBP19.32■□□□□ 0.68
LIMCH1-220ENST00000514190 ABCA6Q8N139 1617 aa19.32■□□□□ 0.68
LIMCH1-220ENST00000514190 RIMS1Q86UR5 1692 aaKnown RBP19.31■□□□□ 0.68
LIMCH1-220ENST00000514190 REREQ9P2R6 1566 aa19.31■□□□□ 0.68
LIMCH1-220ENST00000514190 GCC2Q8IWJ2 1684 aa19.3■□□□□ 0.68
LIMCH1-220ENST00000514190 DUOX2Q9NRD8 1548 aa19.3■□□□□ 0.68
LIMCH1-220ENST00000514190 KIDINS220Q9ULH0 1771 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms