RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 FTSJ3Q8IY81 847 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-218ENST00000513024 OSCARQ8IYS5 282 aa11.11□□□□□ -0.63
LIMCH1-218ENST00000513024 FRAT1Q92837 279 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-218ENST00000513024 RGL3Q3MIN7 710 aa11.11□□□□□ -0.63
LIMCH1-218ENST00000513024 ZNF771Q7L3S4 317 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-218ENST00000513024 HSP90AB1P08238 724 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-218ENST00000513024 DRC7Q8IY82 874 aa11.1□□□□□ -0.63
LIMCH1-218ENST00000513024 TSHZ2Q9NRE2 1034 aa11.1□□□□□ -0.63
LIMCH1-218ENST00000513024 TMX4Q9H1E5 349 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-218ENST00000513024 SPRYD3Q8NCJ5 442 aa11.09□□□□□ -0.63
LIMCH1-218ENST00000513024 RAPGEF2Q9Y4G8 1499 aa11.09□□□□□ -0.63
LIMCH1-218ENST00000513024 PLEKHG5O94827 1062 aa11.09□□□□□ -0.63
LIMCH1-218ENST00000513024 MLECQ14165 292 aa11.08□□□□□ -0.64
LIMCH1-218ENST00000513024 NOC3LQ8WTT2 800 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-218ENST00000513024 KANK1Q14678 1352 aa11.07□□□□□ -0.64
LIMCH1-218ENST00000513024 CASC1Q6TDU7 716 aa11.07□□□□□ -0.64
LIMCH1-218ENST00000513024 USP35Q9P2H5 1018 aa11.07□□□□□ -0.64
LIMCH1-218ENST00000513024 KNSTRNQ9Y448 316 aa11.06□□□□□ -0.64
LIMCH1-218ENST00000513024 KANK4Q5T7N3 995 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-218ENST00000513024 CARMIL2Q6F5E8 1435 aa11.05□□□□□ -0.64
LIMCH1-218ENST00000513024 HSCBQ8IWL3 235 aa11.05□□□□□ -0.64
LIMCH1-218ENST00000513024 GOLGA6L4A6NEF3 574 aa11.05□□□□□ -0.64
LIMCH1-218ENST00000513024 CARD11Q9BXL7 1154 aa11.04□□□□□ -0.64
LIMCH1-218ENST00000513024 DHX57Q6P158 1386 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-218ENST00000513024 GZF1Q9H116 711 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-218ENST00000513024 ANO8Q9HCE9 1232 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-218ENST00000513024 GBP4Q96PP9 640 aa11.03□□□□□ -0.64
LIMCH1-218ENST00000513024 CCDC9Q9Y3X0 531 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-218ENST00000513024 EID1Q9Y6B2 187 aa11.03□□□□□ -0.64
LIMCH1-218ENST00000513024 TAOK2Q9UL54 1235 aa11.03□□□□□ -0.64
LIMCH1-218ENST00000513024 CFAP53Q96M91 514 aa11.03□□□□□ -0.64
LIMCH1-218ENST00000513024 POGKQ9P215 609 aa11.02□□□□□ -0.64
LIMCH1-218ENST00000513024 PHF23Q9BUL5 403 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-218ENST00000513024 CFDP1Q9UEE9 299 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-218ENST00000513024 KIF21BO75037 1637 aa11.01□□□□□ -0.65
LIMCH1-218ENST00000513024 SLKQ9H2G2 1235 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-218ENST00000513024 SYNJ1O43426 1573 aa11□□□□□ -0.65
LIMCH1-218ENST00000513024 CC2D1BQ5T0F9 858 aaKnown RBP11□□□□□ -0.65
LIMCH1-218ENST00000513024 CDCA8Q53HL2 280 aa11□□□□□ -0.65
LIMCH1-218ENST00000513024 MEX3CQ5U5Q3 659 aaKnown RBP11□□□□□ -0.65
LIMCH1-218ENST00000513024 ATAD2BQ9ULI0 1458 aa11□□□□□ -0.65
LIMCH1-218ENST00000513024 FAM13BQ9NYF5 915 aa10.99□□□□□ -0.65
LIMCH1-218ENST00000513024 IPO9Q96P70 1041 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-218ENST00000513024 HTATSF1O43719 755 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-218ENST00000513024 MAP7D2Q96T17 732 aa10.98□□□□□ -0.65
LIMCH1-218ENST00000513024 CCNB3Q8WWL7 1395 aa10.98□□□□□ -0.65
LIMCH1-218ENST00000513024 NOM1Q5C9Z4 860 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-218ENST00000513024 CCER2I3L3R5 266 aa10.97□□□□□ -0.65
LIMCH1-218ENST00000513024 PDE4CQ08493 712 aa10.97□□□□□ -0.65
LIMCH1-218ENST00000513024 MAPK8IP3Q9UPT6 1336 aa10.96□□□□□ -0.65
LIMCH1-218ENST00000513024 GSE1Q14687 1217 aa10.96□□□□□ -0.65
LIMCH1-218ENST00000513024 CYB5RLQ6IPT4 315 aa10.96□□□□□ -0.66
LIMCH1-218ENST00000513024 TEX35Q5T0J7 233 aa10.96□□□□□ -0.66
LIMCH1-218ENST00000513024 SYAP1Q96A49 352 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-218ENST00000513024 KIF27Q86VH2 1401 aa10.96□□□□□ -0.66
LIMCH1-218ENST00000513024 TULP1O00294 542 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-218ENST00000513024 GPS2Q13227 327 aa10.95□□□□□ -0.66
LIMCH1-218ENST00000513024 MTERF4Q7Z6M4 381 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-218ENST00000513024 FGD1P98174 961 aa10.95□□□□□ -0.66
LIMCH1-218ENST00000513024 DNAJC5BQ9UF47 199 aa10.94□□□□□ -0.66
LIMCH1-218ENST00000513024 CCDC66A2RUB6 948 aa10.94□□□□□ -0.66
LIMCH1-218ENST00000513024 KCNJ4P48050 445 aa10.93□□□□□ -0.66
LIMCH1-218ENST00000513024 GOLGA2Q08379 1002 aa10.93□□□□□ -0.66
LIMCH1-218ENST00000513024 NAP1L2Q9ULW6 460 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-218ENST00000513024 U2SURPO15042 1029 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-218ENST00000513024 EFCAB2Q5VUJ9 269 aa10.92□□□□□ -0.66
LIMCH1-218ENST00000513024 STK11IPQ8N1F8 1099 aa10.92□□□□□ -0.66
LIMCH1-218ENST00000513024 NUDCQ9Y266 331 aa10.92□□□□□ -0.66
LIMCH1-218ENST00000513024 TCERG1O14776 1098 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-218ENST00000513024 CC2D2AQ9P2K1 1620 aa10.91□□□□□ -0.66
LIMCH1-218ENST00000513024 MS4A1P11836 297 aa10.91□□□□□ -0.66
LIMCH1-218ENST00000513024 CADPSQ9ULU8 1353 aa10.91□□□□□ -0.66
LIMCH1-218ENST00000513024 SF3B2Q13435 895 aaKnown RBP10.9□□□□□ -0.67
LIMCH1-218ENST00000513024 PRXQ9BXM0 1461 aa10.9□□□□□ -0.67
LIMCH1-218ENST00000513024 CALD1Q05682 793 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-218ENST00000513024 RCAN3Q9UKA8 241 aa10.89□□□□□ -0.67
LIMCH1-218ENST00000513024 OS9Q13438 667 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-218ENST00000513024 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-218ENST00000513024 CHMP4BQ9H444 224 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-218ENST00000513024 RAB3GAP2Q9H2M9 1393 aa10.89□□□□□ -0.67
LIMCH1-218ENST00000513024 CSB-PGBD3P0DP91 1061 aa10.89□□□□□ -0.67
LIMCH1-218ENST00000513024 ARAP1Q96P48 1450 aa10.88□□□□□ -0.67
LIMCH1-218ENST00000513024 PEG3Q9GZU2 1588 aa10.88□□□□□ -0.67
LIMCH1-218ENST00000513024 PATL2C9JE40 543 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-218ENST00000513024 HSPA5P11021 654 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-218ENST00000513024 CSPP1Q1MSJ5 1256 aa10.88□□□□□ -0.67
LIMCH1-218ENST00000513024 FAM43AQ8N2R8 423 aa10.88□□□□□ -0.67
LIMCH1-218ENST00000513024 RRP12Q5JTH9 1297 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-218ENST00000513024 APBB1O00213 710 aa10.87□□□□□ -0.67
LIMCH1-218ENST00000513024 TAF7LQ5H9L4 462 aa10.87□□□□□ -0.67
LIMCH1-218ENST00000513024 RRBP1Q9P2E9 1410 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-218ENST00000513024 GGT6Q6P531 493 aa10.86□□□□□ -0.67
LIMCH1-218ENST00000513024 CFAP44Q96MT7 982 aa10.86□□□□□ -0.67
LIMCH1-218ENST00000513024 CWC15Q9P013 229 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-218ENST00000513024 HMGB2P26583 209 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-218ENST00000513024 RDXP35241 583 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-218ENST00000513024 TPM4P67936 248 aa10.85□□□□□ -0.67
LIMCH1-218ENST00000513024 DCAF11Q8TEB1 546 aa10.85□□□□□ -0.67
LIMCH1-218ENST00000513024 ERICH3Q5RHP9 1530 aa10.85□□□□□ -0.67
LIMCH1-218ENST00000513024 CHMP4AQ9BY43 222 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms