RNA–Protein interactions for RNA: ENST00000512881.5

RFC1-215, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-215ENST00000512881 STK25O00506 426 aa12.87□□□□□ -0.35
RFC1-215ENST00000512881 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.87□□□□□ -0.35
RFC1-215ENST00000512881 SOX12O15370 315 aa12.86□□□□□ -0.35
RFC1-215ENST00000512881 MS4A4AQ96JQ5 239 aa12.86□□□□□ -0.35
RFC1-215ENST00000512881 CADPSQ9ULU8 1353 aa12.85□□□□□ -0.35
RFC1-215ENST00000512881 C3orf67Q6ZVT6 689 aa12.85□□□□□ -0.35
RFC1-215ENST00000512881 PHF8Q9UPP1 1060 aa12.85□□□□□ -0.35
RFC1-215ENST00000512881 PDS5BQ9NTI5 1447 aa12.85□□□□□ -0.35
RFC1-215ENST00000512881 BOLA1Q9Y3E2 137 aa12.84□□□□□ -0.35
RFC1-215ENST00000512881 LAMC3Q9Y6N6 1575 aa12.83□□□□□ -0.36
RFC1-215ENST00000512881 RSF1Q96T23 1441 aaPredicted RBP12.82□□□□□ -0.36
RFC1-215ENST00000512881 WIZO95785 1651 aa12.81□□□□□ -0.36
RFC1-215ENST00000512881 FBXO22Q8NEZ5 403 aa12.8□□□□□ -0.36
RFC1-215ENST00000512881 TMEM121BQ9BXQ6 578 aaPredicted RBP12.8□□□□□ -0.36
RFC1-215ENST00000512881 MFRPQ9BY79 579 aa12.79□□□□□ -0.36
RFC1-215ENST00000512881 FAM163AQ96GL9 167 aaPredicted RBP12.77□□□□□ -0.37
RFC1-215ENST00000512881 G3V3G9 751 aa12.76□□□□□ -0.37
RFC1-215ENST00000512881 NLRP6P59044 892 aa12.76□□□□□ -0.37
RFC1-215ENST00000512881 MICALL2Q8IY33 904 aa12.76□□□□□ -0.37
RFC1-215ENST00000512881 POTEMA6NI47 508 aa12.75□□□□□ -0.37
RFC1-215ENST00000512881 POTEGQ6S5H5 508 aa12.74□□□□□ -0.37
RFC1-215ENST00000512881 HS6ST3Q8IZP7 471 aa12.73□□□□□ -0.37
RFC1-215ENST00000512881 THOC2Q8NI27 1593 aaKnown RBP12.73□□□□□ -0.37
RFC1-215ENST00000512881 ST18O60284 1047 aa12.69□□□□□ -0.38
RFC1-215ENST00000512881 CFTRP13569 1480 aa12.68□□□□□ -0.38
RFC1-215ENST00000512881 MRC2Q9UBG0 1479 aa12.68□□□□□ -0.38
RFC1-215ENST00000512881 TOP2AP11388 1531 aaKnown RBP12.67□□□□□ -0.38
RFC1-215ENST00000512881 KIF21AQ7Z4S6 1674 aa12.67□□□□□ -0.38
RFC1-215ENST00000512881 TMEM92Q6UXU6 159 aa12.67□□□□□ -0.38
RFC1-215ENST00000512881 SNPHO15079 494 aa12.66□□□□□ -0.38
RFC1-215ENST00000512881 FANCD2Q9BXW9 1451 aa12.65□□□□□ -0.38
RFC1-215ENST00000512881 CHGAP10645 457 aaKnown RBP12.64□□□□□ -0.39
RFC1-215ENST00000512881 CEP164Q9UPV0 1460 aa12.64□□□□□ -0.39
RFC1-215ENST00000512881 WDR62O43379 1518 aa12.62□□□□□ -0.39
RFC1-215ENST00000512881 CCDC88BA6NC98 1476 aa12.59□□□□□ -0.39
RFC1-215ENST00000512881 HOXB3P14651 431 aaPredicted RBP12.59□□□□□ -0.39
RFC1-215ENST00000512881 NKX1-1Q15270 411 aaPredicted RBP12.58□□□□□ -0.4
RFC1-215ENST00000512881 PPP1R37O75864 691 aa12.57□□□□□ -0.4
RFC1-215ENST00000512881 URB2Q14146 1524 aaKnown RBP12.53□□□□□ -0.4
RFC1-215ENST00000512881 MARVELD3Q96A59 401 aa12.52□□□□□ -0.41
RFC1-215ENST00000512881 KIF3CO14782 793 aa12.5□□□□□ -0.41
RFC1-215ENST00000512881 DOK7Q18PE1 504 aa12.49□□□□□ -0.41
RFC1-215ENST00000512881 PCDH10Q9P2E7 1040 aa12.48□□□□□ -0.41
RFC1-215ENST00000512881 C2orf72A6NCS6 295 aa12.46□□□□□ -0.41
RFC1-215ENST00000512881 EMP3P54852 163 aa12.45□□□□□ -0.42
RFC1-215ENST00000512881 AMER1Q5JTC6 1135 aaPredicted RBP12.44□□□□□ -0.42
RFC1-215ENST00000512881 HOXB1P14653 301 aaPredicted RBP12.43□□□□□ -0.42
RFC1-215ENST00000512881 CDAN1Q8IWY9 1227 aa12.43□□□□□ -0.42
RFC1-215ENST00000512881 ZNF710Q8N1W2 664 aa12.43□□□□□ -0.42
RFC1-215ENST00000512881 RTN4Q9NQC3 1192 aaKnown RBP12.42□□□□□ -0.42
RFC1-215ENST00000512881 TOPBP1Q92547 1522 aa12.41□□□□□ -0.42
RFC1-215ENST00000512881 IFT140Q96RY7 1462 aa12.4□□□□□ -0.42
RFC1-215ENST00000512881 ABCC8Q09428 1581 aa12.4□□□□□ -0.42
RFC1-215ENST00000512881 RIMBP2O15034 1052 aa12.4□□□□□ -0.42
RFC1-215ENST00000512881 RYDENQ9NUL5 291 aaKnown RBP12.4□□□□□ -0.42
RFC1-215ENST00000512881 ZSWIM6Q9HCJ5 1215 aa12.39□□□□□ -0.43
RFC1-215ENST00000512881 ZNF608Q9ULD9 1512 aaPredicted RBP12.38□□□□□ -0.43
RFC1-215ENST00000512881 POTEB3A0JP26 581 aa12.38□□□□□ -0.43
RFC1-215ENST00000512881 SUPT5HO00267 1087 aaKnown RBP12.38□□□□□ -0.43
RFC1-215ENST00000512881 GTPBP6O43824 516 aaPredicted RBP12.38□□□□□ -0.43
RFC1-215ENST00000512881 POTEBQ6S5H4 581 aa12.38□□□□□ -0.43
RFC1-215ENST00000512881 TMC2Q8TDI7 906 aa12.38□□□□□ -0.43
RFC1-215ENST00000512881 HS3ST6Q96QI5 342 aa12.37□□□□□ -0.43
RFC1-215ENST00000512881 GPR153Q6NV75 609 aa12.36□□□□□ -0.43
RFC1-215ENST00000512881 FAM205CA6NFA0 338 aa12.35□□□□□ -0.43
RFC1-215ENST00000512881 PLSCR2Q9NRY7 297 aa12.35□□□□□ -0.43
RFC1-215ENST00000512881 PRDM2Q13029 1718 aa12.34□□□□□ -0.43
RFC1-215ENST00000512881 DNMBPQ6XZF7 1577 aa12.34□□□□□ -0.43
RFC1-215ENST00000512881 AQRO60306 1485 aaKnown RBP eCLIP12.32□□□□□ -0.44
RFC1-215ENST00000512881 ARSIQ5FYB1 569 aa12.3□□□□□ -0.44
RFC1-215ENST00000512881 GPHNQ9NQX3 736 aaPredicted RBP12.3□□□□□ -0.44
RFC1-215ENST00000512881 SOGA1O94964 1423 aa12.29□□□□□ -0.44
RFC1-215ENST00000512881 POLA1P09884 1462 aaPredicted RBP12.29□□□□□ -0.44
RFC1-215ENST00000512881 SLC34A2O95436 690 aa12.29□□□□□ -0.44
RFC1-215ENST00000512881 FOXK1P85037 733 aa12.29□□□□□ -0.44
RFC1-215ENST00000512881 KHSRPQ92945 711 aaKnown RBP eCLIP12.29□□□□□ -0.44
RFC1-215ENST00000512881 RAD54L2Q9Y4B4 1467 aa12.27□□□□□ -0.44
RFC1-215ENST00000512881 DSG2Q14126 1118 aa12.27□□□□□ -0.45
RFC1-215ENST00000512881 CRISPLD2Q9H0B8 497 aa12.27□□□□□ -0.45
RFC1-215ENST00000512881 ERBB3P21860 1342 aa12.27□□□□□ -0.45
RFC1-215ENST00000512881 TDRD9Q8NDG6 1382 aaKnown RBP12.27□□□□□ -0.45
RFC1-215ENST00000512881 KRTAP3-3Q9BYR6 98 aa12.25□□□□□ -0.45
RFC1-215ENST00000512881 KRTAP3-2Q9BYR7 98 aa12.25□□□□□ -0.45
RFC1-215ENST00000512881 TARBP1Q13395 1621 aaKnown RBP12.25□□□□□ -0.45
RFC1-215ENST00000512881 VARS2Q5ST30 1063 aaKnown RBP12.24□□□□□ -0.45
RFC1-215ENST00000512881 PLPP6Q8IY26 295 aa12.24□□□□□ -0.45
RFC1-215ENST00000512881 NCKAP5LQ9HCH0 1330 aa12.24□□□□□ -0.45
RFC1-215ENST00000512881 PCDHGA4Q9Y5G9 962 aa12.24□□□□□ -0.45
RFC1-215ENST00000512881 EIF4G3O43432 1585 aaKnown RBP12.23□□□□□ -0.45
RFC1-215ENST00000512881 CUX1P39880 1505 aa12.22□□□□□ -0.45
RFC1-215ENST00000512881 FGD5Q6ZNL6 1462 aa12.22□□□□□ -0.45
RFC1-215ENST00000512881 NUDT7P0C024 238 aa12.21□□□□□ -0.45
RFC1-215ENST00000512881 BBXQ8WY36 941 aaPredicted RBP12.21□□□□□ -0.45
RFC1-215ENST00000512881 CHMP7Q8WUX9 453 aaPredicted RBP12.19□□□□□ -0.46
RFC1-215ENST00000512881 ZNF316A6NFI3 1004 aaPredicted RBP12.18□□□□□ -0.46
RFC1-215ENST00000512881 PTCD2Q8WV60 388 aaKnown RBP12.18□□□□□ -0.46
RFC1-215ENST00000512881 CYB5RLQ6IPT4 315 aa12.17□□□□□ -0.46
RFC1-215ENST00000512881 PPP1R15BQ5SWA1 713 aa12.16□□□□□ -0.46
RFC1-215ENST00000512881 ARHGEF11O15085 1522 aa12.16□□□□□ -0.46
RFC1-215ENST00000512881 KDM4FA0A1W2PPD8 638 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms