RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 ATMINO43313 823 aaPredicted RBP12.52□□□□□ -0.41
USP46-208ENST00000512656 JPH4Q96JJ6 628 aa12.52□□□□□ -0.41
USP46-208ENST00000512656 SHROOM2Q13796 1616 aa12.51□□□□□ -0.41
USP46-208ENST00000512656 KLHL34Q8N239 644 aa12.5□□□□□ -0.41
USP46-208ENST00000512656 PRG4Q92954 1404 aaPredicted RBP12.5□□□□□ -0.41
USP46-208ENST00000512656 TIE1P35590 1138 aa12.49□□□□□ -0.41
USP46-208ENST00000512656 KIF27Q86VH2 1401 aa12.48□□□□□ -0.41
USP46-208ENST00000512656 SLC39A7Q92504 469 aa12.48□□□□□ -0.41
USP46-208ENST00000512656 C7P10643 843 aa12.47□□□□□ -0.41
USP46-208ENST00000512656 PELP1Q8IZL8 1130 aaKnown RBP12.47□□□□□ -0.41
USP46-208ENST00000512656 DCAF8Q5TAQ9 597 aa12.46□□□□□ -0.41
USP46-208ENST00000512656 PCDHB13Q9Y5F0 798 aa12.46□□□□□ -0.41
USP46-208ENST00000512656 IGF1RP08069 1367 aa12.45□□□□□ -0.42
USP46-208ENST00000512656 BMP2KQ9NSY1 1161 aaPredicted RBP12.45□□□□□ -0.42
USP46-208ENST00000512656 GSE1Q14687 1217 aa12.44□□□□□ -0.42
USP46-208ENST00000512656 RUSC2Q8N2Y8 1516 aa12.43□□□□□ -0.42
USP46-208ENST00000512656 KIAA0586Q9BVV6 1533 aa12.43□□□□□ -0.42
USP46-208ENST00000512656 ATN1P54259 1190 aaPredicted RBP12.42□□□□□ -0.42
USP46-208ENST00000512656 CUL7Q14999 1698 aa12.42□□□□□ -0.42
USP46-208ENST00000512656 METRNQ9UJH8 293 aa12.41□□□□□ -0.42
USP46-208ENST00000512656 TRPC6Q9Y210 931 aa12.4□□□□□ -0.42
USP46-208ENST00000512656 CARMIL1Q5VZK9 1371 aa12.39□□□□□ -0.43
USP46-208ENST00000512656 TTLL13PA6NNM8 815 aa12.38□□□□□ -0.43
USP46-208ENST00000512656 IFNL1Q8IU54 200 aa12.38□□□□□ -0.43
USP46-208ENST00000512656 IFNLR1Q8IU57 520 aaPredicted RBP12.38□□□□□ -0.43
USP46-208ENST00000512656 SPOCK2Q92563 424 aa12.37□□□□□ -0.43
USP46-208ENST00000512656 FAM69CQ0P6D2 419 aa12.35□□□□□ -0.43
USP46-208ENST00000512656 PYGBP11216 843 aa12.34□□□□□ -0.43
USP46-208ENST00000512656 CHRM1P11229 460 aaPredicted RBP12.34□□□□□ -0.43
USP46-208ENST00000512656 CARMIL2Q6F5E8 1435 aa12.34□□□□□ -0.43
USP46-208ENST00000512656 MAPKBP1O60336 1514 aa12.33□□□□□ -0.44
USP46-208ENST00000512656 POTEB2H3BUK9 544 aa12.33□□□□□ -0.44
USP46-208ENST00000512656 PTPRGP23470 1445 aa12.33□□□□□ -0.44
USP46-208ENST00000512656 ABCC10Q5T3U5 1492 aa12.33□□□□□ -0.44
USP46-208ENST00000512656 IER5LQ5T953 404 aa12.32□□□□□ -0.44
USP46-208ENST00000512656 KIF13AQ9H1H9 1805 aa12.3□□□□□ -0.44
USP46-208ENST00000512656 ADCY10Q96PN6 1610 aa12.3□□□□□ -0.44
USP46-208ENST00000512656 TNIKQ9UKE5 1360 aa12.3□□□□□ -0.44
USP46-208ENST00000512656 TRIM35Q9UPQ4 493 aa12.29□□□□□ -0.44
USP46-208ENST00000512656 IQGAP2Q13576 1575 aa12.28□□□□□ -0.44
USP46-208ENST00000512656 MAMSTRQ6ZN01 415 aa12.28□□□□□ -0.44
USP46-208ENST00000512656 ZNF467Q7Z7K2 595 aaPredicted RBP12.28□□□□□ -0.44
USP46-208ENST00000512656 OTUD5Q96G74 571 aa12.28□□□□□ -0.44
USP46-208ENST00000512656 TMEM106CQ9BVX2 250 aa12.28□□□□□ -0.44
USP46-208ENST00000512656 TTBK1Q5TCY1 1321 aaPredicted RBP12.28□□□□□ -0.44
USP46-208ENST00000512656 RAPGEF2Q9Y4G8 1499 aa12.27□□□□□ -0.45
USP46-208ENST00000512656 DIP2BQ9P265 1576 aa12.26□□□□□ -0.45
USP46-208ENST00000512656 ABCC2Q92887 1545 aa12.24□□□□□ -0.45
USP46-208ENST00000512656 PCDHB8Q9UN66 801 aa12.23□□□□□ -0.45
USP46-208ENST00000512656 UHRF1BP1LA0JNW5 1464 aa12.22□□□□□ -0.45
USP46-208ENST00000512656 UACAQ9BZF9 1416 aa12.22□□□□□ -0.45
USP46-208ENST00000512656 POTEFA5A3E0 1075 aa12.22□□□□□ -0.45
USP46-208ENST00000512656 SEC24BO95487 1268 aa12.22□□□□□ -0.45
USP46-208ENST00000512656 PLB1Q6P1J6 1458 aa12.21□□□□□ -0.45
USP46-208ENST00000512656 DISP1Q96F81 1524 aa12.21□□□□□ -0.46
USP46-208ENST00000512656 UGGT2Q9NYU1 1516 aa12.21□□□□□ -0.46
USP46-208ENST00000512656 POTEJP0CG39 1038 aa12.2□□□□□ -0.46
USP46-208ENST00000512656 CIZ1Q9ULV3 898 aaPredicted RBP12.2□□□□□ -0.46
USP46-208ENST00000512656 ASXL2Q76L83 1435 aa12.2□□□□□ -0.46
USP46-208ENST00000512656 SCUBE2Q9NQ36 999 aa12.18□□□□□ -0.46
USP46-208ENST00000512656 KDM6BO15054 1643 aa12.18□□□□□ -0.46
USP46-208ENST00000512656 COLQQ9Y215 455 aaPredicted RBP12.17□□□□□ -0.46
USP46-208ENST00000512656 FAM9AQ8IZU1 332 aaPredicted RBP12.16□□□□□ -0.46
USP46-208ENST00000512656 KDM5BQ9UGL1 1544 aa12.16□□□□□ -0.46
USP46-208ENST00000512656 KIAA0556O60303 1618 aa12.15□□□□□ -0.46
USP46-208ENST00000512656 GOLGA3Q08378 1498 aa12.15□□□□□ -0.46
USP46-208ENST00000512656 GLI2P10070 1586 aa12.15□□□□□ -0.46
USP46-208ENST00000512656 TSPOAP1O95153 1857 aa12.14□□□□□ -0.47
USP46-208ENST00000512656 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
USP46-208ENST00000512656 PLCG2P16885 1265 aa12.12□□□□□ -0.47
USP46-208ENST00000512656 PRXQ9BXM0 1461 aa12.12□□□□□ -0.47
USP46-208ENST00000512656 PSEN1P49768 467 aa12.11□□□□□ -0.47
USP46-208ENST00000512656 PDAP1Q13442 181 aaKnown RBP12.11□□□□□ -0.47
USP46-208ENST00000512656 EPRSP07814 1512 aaKnown RBP12.11□□□□□ -0.47
USP46-208ENST00000512656 CTTNBP2Q8WZ74 1663 aa12.1□□□□□ -0.47
USP46-208ENST00000512656 TEX14Q8IWB6 1497 aa12.1□□□□□ -0.47
USP46-208ENST00000512656 OCEL1Q9H607 264 aa12.1□□□□□ -0.47
USP46-208ENST00000512656 ZCCHC11Q5TAX3 1644 aaKnown RBP12.09□□□□□ -0.47
USP46-208ENST00000512656 WDR7Q9Y4E6 1490 aa12.08□□□□□ -0.48
USP46-208ENST00000512656 GOLGA2Q08379 1002 aa12.06□□□□□ -0.48
USP46-208ENST00000512656 MAP3K4Q9Y6R4 1608 aa12.05□□□□□ -0.48
USP46-208ENST00000512656 KDM4FA0A1W2PPD8 638 aa12.05□□□□□ -0.48
USP46-208ENST00000512656 PPRC1Q5VV67 1664 aaKnown RBP12.05□□□□□ -0.48
USP46-208ENST00000512656 ABCA8O94911 1581 aa12.05□□□□□ -0.48
USP46-208ENST00000512656 MKRN3Q13064 507 aaKnown RBP12.04□□□□□ -0.48
USP46-208ENST00000512656 KCNH8Q96L42 1107 aa12.04□□□□□ -0.48
USP46-208ENST00000512656 EEA1Q15075 1411 aa12.03□□□□□ -0.48
USP46-208ENST00000512656 CD109Q6YHK3 1445 aa12.03□□□□□ -0.48
USP46-208ENST00000512656 P3H3Q8IVL6 736 aa12.01□□□□□ -0.49
USP46-208ENST00000512656 COL17A1Q9UMD9 1497 aaPredicted RBP12.01□□□□□ -0.49
USP46-208ENST00000512656 MAGI3Q5TCQ9 1506 aa12□□□□□ -0.49
USP46-208ENST00000512656 CFAP43Q8NDM7 1665 aa11.98□□□□□ -0.49
USP46-208ENST00000512656 ILDR1Q86SU0 546 aaPredicted RBP11.98□□□□□ -0.49
USP46-208ENST00000512656 ARID3CA6NKF2 412 aa11.97□□□□□ -0.49
USP46-208ENST00000512656 PDCD7Q8N8D1 485 aaKnown RBP11.97□□□□□ -0.49
USP46-208ENST00000512656 ATP10BO94823 1461 aa11.96□□□□□ -0.49
USP46-208ENST00000512656 ADGRL1O94910 1474 aa11.96□□□□□ -0.49
USP46-208ENST00000512656 RIOK3O14730 519 aaKnown RBP11.95□□□□□ -0.5
USP46-208ENST00000512656 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.95□□□□□ -0.5
USP46-208ENST00000512656 SAMD9Q5K651 1589 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms