RNA–Protein interactions for RNA: ENST00000510281.1

TRIO-215, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 2

Gene TRIO, Length 861 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-215	ENST00000510281	SIGLEC1	Q9BZZ2	1709 aa		32.83	■■■□□ 2.85
TRIO-215	ENST00000510281	SCAPER	Q9BY12	1400 aa		32.82	■■■□□ 2.84
TRIO-215	ENST00000510281	FMN1	Q68DA7	1419 aa		32.77	■■■□□ 2.84
TRIO-215	ENST00000510281	HSPA2	P54652	639 aa		32.74	■■■□□ 2.83
TRIO-215	ENST00000510281	ATP10A	O60312	1499 aa		32.72	■■■□□ 2.83
TRIO-215	ENST00000510281	EFCAB2	Q5VUJ9	269 aa		32.71	■■■□□ 2.83
TRIO-215	ENST00000510281	C9orf84	Q5VXU9	1444 aa		32.69	■■■□□ 2.82
TRIO-215	ENST00000510281	ARHGEF12	Q9NZN5	1544 aa		32.69	■■■□□ 2.82
TRIO-215	ENST00000510281	MLEC	Q14165	292 aa		32.69	■■■□□ 2.82
TRIO-215	ENST00000510281	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.69	■■■□□ 2.82
TRIO-215	ENST00000510281	FER1L4	A9Z1Z3	1794 aa		32.68	■■■□□ 2.82
TRIO-215	ENST00000510281	PLPPR3	Q6T4P5	718 aa		32.67	■■■□□ 2.82
TRIO-215	ENST00000510281	MYO5C	Q9NQX4	1742 aa		32.65	■■■□□ 2.82
TRIO-215	ENST00000510281	TRO	Q12816	1431 aa	Predicted RBP	32.63	■■■□□ 2.81
TRIO-215	ENST00000510281	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.63	■■■□□ 2.81
TRIO-215	ENST00000510281	KIF14	Q15058	1648 aa		32.62	■■■□□ 2.81
TRIO-215	ENST00000510281	ZNF518A	Q6AHZ1	1483 aa		32.61	■■■□□ 2.81
TRIO-215	ENST00000510281	CLIP1	P30622	1438 aa		32.59	■■■□□ 2.81
TRIO-215	ENST00000510281	KDM5C	P41229	1560 aa		32.58	■■■□□ 2.81
TRIO-215	ENST00000510281	ARHGAP5	Q13017	1502 aa		32.55	■■■□□ 2.8
TRIO-215	ENST00000510281	AFAP1	Q8N556	730 aa		32.53	■■■□□ 2.8
TRIO-215	ENST00000510281	CERK	Q8TCT0	537 aa		32.53	■■■□□ 2.8
TRIO-215	ENST00000510281	LRRIQ1	Q96JM4	1722 aa		32.53	■■■□□ 2.8
TRIO-215	ENST00000510281	PREX1	Q8TCU6	1659 aa		32.5	■■■□□ 2.79
TRIO-215	ENST00000510281	RERE	Q9P2R6	1566 aa		32.49	■■■□□ 2.79
TRIO-215	ENST00000510281	CASKIN1	Q8WXD9	1431 aa		32.49	■■■□□ 2.79
TRIO-215	ENST00000510281	CEBPA	P49715	358 aa	Predicted RBP	32.47	■■■□□ 2.79
TRIO-215	ENST00000510281	DIP2C	Q9Y2E4	1556 aa		32.47	■■■□□ 2.79
TRIO-215	ENST00000510281	MLH3	Q9UHC1	1453 aa		32.47	■■■□□ 2.79
TRIO-215	ENST00000510281	CDC42BPB	Q9Y5S2	1711 aa		32.4	■■■□□ 2.78
TRIO-215	ENST00000510281	UHRF1BP1	Q6BDS2	1440 aa		32.4	■■■□□ 2.78
TRIO-215	ENST00000510281	FYCO1	Q9BQS8	1478 aa		32.4	■■■□□ 2.78
TRIO-215	ENST00000510281	CEP162	Q5TB80	1403 aa		32.39	■■■□□ 2.78
TRIO-215	ENST00000510281	CCDC18	Q5T9S5	1454 aa		32.39	■■■□□ 2.78
TRIO-215	ENST00000510281	ABCC1	P33527	1531 aa		32.39	■■■□□ 2.78
TRIO-215	ENST00000510281	AGL	P35573	1532 aa		32.39	■■■□□ 2.78
TRIO-215	ENST00000510281	ABCA6	Q8N139	1617 aa		32.39	■■■□□ 2.78
TRIO-215	ENST00000510281	PREX2	Q70Z35	1606 aa		32.38	■■■□□ 2.77
TRIO-215	ENST00000510281	TRAPPC8	Q9Y2L5	1435 aa		32.37	■■■□□ 2.77
TRIO-215	ENST00000510281	DMRT2	Q9Y5R5	561 aa		32.37	■■■□□ 2.77
TRIO-215	ENST00000510281	MYT1L	Q9UL68	1186 aa		32.36	■■■□□ 2.77
TRIO-215	ENST00000510281	STRC	Q7RTU9	1775 aa		32.34	■■■□□ 2.77
TRIO-215	ENST00000510281	SETD1B	Q9UPS6	1966 aa	Known RBP	32.33	■■■□□ 2.77
TRIO-215	ENST00000510281	LOC105371045	A0A1W2PR82	267 aa		32.33	■■■□□ 2.77
TRIO-215	ENST00000510281	ITSN2	Q9NZM3	1697 aa		32.3	■■■□□ 2.76
TRIO-215	ENST00000510281	C3	P01024	1663 aa		32.27	■■■□□ 2.76
TRIO-215	ENST00000510281	PTPRT	O14522	1441 aa		32.25	■■■□□ 2.75
TRIO-215	ENST00000510281	KIDINS220	Q9ULH0	1771 aa		32.24	■■■□□ 2.75
TRIO-215	ENST00000510281	CNTLN	Q9NXG0	1405 aa		32.24	■■■□□ 2.75
TRIO-215	ENST00000510281	ESF1	Q9H501	851 aa	Known RBP	32.22	■■■□□ 2.75
TRIO-215	ENST00000510281	CDC42BPA	Q5VT25	1732 aa		32.21	■■■□□ 2.75
TRIO-215	ENST00000510281	SAMD9L	Q8IVG5	1584 aa		32.18	■■■□□ 2.74
TRIO-215	ENST00000510281	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.15	■■■□□ 2.74
TRIO-215	ENST00000510281	NCOA1	Q15788	1441 aa		32.13	■■■□□ 2.73
TRIO-215	ENST00000510281	NPAT	Q14207	1427 aa		32.12	■■■□□ 2.73
TRIO-215	ENST00000510281	SYCP2	Q9BX26	1530 aa		32.11	■■■□□ 2.73
TRIO-215	ENST00000510281	KIAA1107	Q9UPP5	1409 aa		32.09	■■■□□ 2.73
TRIO-215	ENST00000510281	SPAG9	O60271	1321 aa	Known RBP	32.09	■■■□□ 2.73
TRIO-215	ENST00000510281	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.09	■■■□□ 2.73
TRIO-215	ENST00000510281	MROH2A	A6NES4	1674 aa		32.08	■■■□□ 2.73
TRIO-215	ENST00000510281	LTBP4	Q8N2S1	1624 aa		32.08	■■■□□ 2.73
TRIO-215	ENST00000510281	ZMYM3	Q14202	1370 aa		32.06	■■■□□ 2.72
TRIO-215	ENST00000510281	PLEKHH2	Q8IVE3	1493 aa		32.05	■■■□□ 2.72
TRIO-215	ENST00000510281	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.04	■■■□□ 2.72
TRIO-215	ENST00000510281	IQSEC2	Q5JU85	1478 aa		32.03	■■■□□ 2.72
TRIO-215	ENST00000510281	PLXNC1	O60486	1568 aa		32.03	■■■□□ 2.72
TRIO-215	ENST00000510281	ATP7A	Q04656	1500 aa		32.03	■■■□□ 2.72
TRIO-215	ENST00000510281	MTUS2	Q5JR59	1369 aa		32.03	■■■□□ 2.72
TRIO-215	ENST00000510281	INO80	Q9ULG1	1556 aa	Predicted RBP	32	■■■□□ 2.71
TRIO-215	ENST00000510281	VPS8	Q8N3P4	1428 aa		32	■■■□□ 2.71
TRIO-215	ENST00000510281	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.99	■■■□□ 2.71
TRIO-215	ENST00000510281	CAMSAP1	Q5T5Y3	1602 aa		31.99	■■■□□ 2.71
TRIO-215	ENST00000510281	A2M	P01023	1474 aa		31.98	■■■□□ 2.71
TRIO-215	ENST00000510281	EHBP1L1	Q8N3D4	1523 aa		31.98	■■■□□ 2.71
TRIO-215	ENST00000510281	DISP3	Q9P2K9	1392 aa		31.97	■■■□□ 2.71
TRIO-215	ENST00000510281	CCNB3	Q8WWL7	1395 aa		31.96	■■■□□ 2.71
TRIO-215	ENST00000510281	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.95	■■■□□ 2.71
TRIO-215	ENST00000510281	PTPRK	Q15262	1439 aa		31.92	■■■□□ 2.7
TRIO-215	ENST00000510281	PLA2R1	Q13018	1463 aa		31.91	■■■□□ 2.7
TRIO-215	ENST00000510281	CLTC	Q00610	1675 aa	Known RBP	31.9	■■■□□ 2.7
TRIO-215	ENST00000510281	ILDR2	Q71H61	639 aa		31.9	■■■□□ 2.7
TRIO-215	ENST00000510281	PPP6R1	Q9UPN7	881 aa		31.9	■■■□□ 2.7
TRIO-215	ENST00000510281	TIAM1	Q13009	1591 aa		31.9	■■■□□ 2.7
TRIO-215	ENST00000510281	ZNF142	P52746	1687 aa	Predicted RBP	31.89	■■■□□ 2.7
TRIO-215	ENST00000510281	MYO3A	Q8NEV4	1616 aa		31.88	■■■□□ 2.69
TRIO-215	ENST00000510281	NCKAP5L	Q9HCH0	1330 aa		31.87	■■■□□ 2.69
TRIO-215	ENST00000510281	PKD2	Q13563	968 aa		31.86	■■■□□ 2.69
TRIO-215	ENST00000510281	TCOF1	Q13428	1488 aa	Known RBP	31.85	■■■□□ 2.69
TRIO-215	ENST00000510281	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.85	■■■□□ 2.69
TRIO-215	ENST00000510281	MBD5	Q9P267	1494 aa		31.84	■■■□□ 2.69
TRIO-215	ENST00000510281	GGT6	Q6P531	493 aa		31.84	■■■□□ 2.69
TRIO-215	ENST00000510281	ADGB	Q8N7X0	1667 aa		31.83	■■■□□ 2.69
TRIO-215	ENST00000510281	SPATA31D1	Q6ZQQ2	1576 aa		31.82	■■■□□ 2.68
TRIO-215	ENST00000510281	SOCS7	O14512	581 aa		31.81	■■■□□ 2.68
TRIO-215	ENST00000510281	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.81	■■■□□ 2.68
TRIO-215	ENST00000510281	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.8	■■■□□ 2.68
TRIO-215	ENST00000510281	ZNF644	Q9H582	1327 aa	Predicted RBP	31.8	■■■□□ 2.68
TRIO-215	ENST00000510281	NCOA2	Q15596	1464 aa		31.79	■■■□□ 2.68
TRIO-215	ENST00000510281	LRRC9	Q6ZRR7	1453 aa		31.76	■■■□□ 2.67
TRIO-215	ENST00000510281	SENP3	Q9H4L4	574 aa	Predicted RBP	31.75	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms