RNA–Protein interactions for RNA: ENST00000505331.1

CPNE4-204, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 318 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-204ENST00000505331 CACNB1Q02641 598 aaPredicted RBP7.77□□□□□ -1.17
CPNE4-204ENST00000505331 POTEAQ6S8J7 498 aa7.76□□□□□ -1.17
CPNE4-204ENST00000505331 EFCAB5A4FU69 1503 aa7.76□□□□□ -1.17
CPNE4-204ENST00000505331 ZFYVE16Q7Z3T8 1539 aa7.76□□□□□ -1.17
CPNE4-204ENST00000505331 UGGT2Q9NYU1 1516 aa7.76□□□□□ -1.17
CPNE4-204ENST00000505331 PKD2Q13563 968 aa7.75□□□□□ -1.17
CPNE4-204ENST00000505331 PPP4R3CPQ6ZMV5 832 aa7.75□□□□□ -1.17
CPNE4-204ENST00000505331 KIF27Q86VH2 1401 aa7.75□□□□□ -1.17
CPNE4-204ENST00000505331 TRAPPC8Q9Y2L5 1435 aa7.75□□□□□ -1.17
CPNE4-204ENST00000505331 NCKAP5LQ9HCH0 1330 aa7.75□□□□□ -1.17
CPNE4-204ENST00000505331 ABCA9Q8IUA7 1624 aa7.74□□□□□ -1.17
CPNE4-204ENST00000505331 FER1L4A9Z1Z3 1794 aa7.74□□□□□ -1.17
CPNE4-204ENST00000505331 UPF1Q92900 1129 aaKnown RBP eCLIP7.74□□□□□ -1.17
CPNE4-204ENST00000505331 ZMYM4Q5VZL5 1548 aa7.73□□□□□ -1.17
CPNE4-204ENST00000505331 PTPRKQ15262 1439 aa7.73□□□□□ -1.17
CPNE4-204ENST00000505331 KIAA0556O60303 1618 aa7.73□□□□□ -1.17
CPNE4-204ENST00000505331 ABCA8O94911 1581 aa7.71□□□□□ -1.17
CPNE4-204ENST00000505331 C9orf84Q5VXU9 1444 aa7.71□□□□□ -1.17
CPNE4-204ENST00000505331 ATP10AO60312 1499 aa7.71□□□□□ -1.18
CPNE4-204ENST00000505331 HOXD11P31277 338 aaPredicted RBP7.71□□□□□ -1.18
CPNE4-204ENST00000505331 SIGLEC1Q9BZZ2 1709 aa7.71□□□□□ -1.18
CPNE4-204ENST00000505331 CAMSAP1Q5T5Y3 1602 aa7.7□□□□□ -1.18
CPNE4-204ENST00000505331 DCAF8L1A6NGE4 600 aa7.7□□□□□ -1.18
CPNE4-204ENST00000505331 FAM9AQ8IZU1 332 aaPredicted RBP7.7□□□□□ -1.18
CPNE4-204ENST00000505331 ATP10BO94823 1461 aa7.69□□□□□ -1.18
CPNE4-204ENST00000505331 CPS1P31327 1500 aa7.69□□□□□ -1.18
CPNE4-204ENST00000505331 ARID3CA6NKF2 412 aa7.69□□□□□ -1.18
CPNE4-204ENST00000505331 ESF1Q9H501 851 aaKnown RBP7.69□□□□□ -1.18
CPNE4-204ENST00000505331 SRCAPQ6ZRS2 3230 aa7.69□□□□□ -1.18
CPNE4-204ENST00000505331 PLA2R1Q13018 1463 aa7.68□□□□□ -1.18
CPNE4-204ENST00000505331 RICTORQ6R327 1708 aa7.68□□□□□ -1.18
CPNE4-204ENST00000505331 TCOF1Q13428 1488 aaKnown RBP7.67□□□□□ -1.18
CPNE4-204ENST00000505331 GOLGA3Q08378 1498 aa7.66□□□□□ -1.18
CPNE4-204ENST00000505331 RAPGEF2Q9Y4G8 1499 aa7.66□□□□□ -1.18
CPNE4-204ENST00000505331 NPATQ14207 1427 aa7.65□□□□□ -1.18
CPNE4-204ENST00000505331 IFFO2Q5TF58 517 aa7.65□□□□□ -1.18
CPNE4-204ENST00000505331 HECW1Q76N89 1606 aa7.65□□□□□ -1.18
CPNE4-204ENST00000505331 SETD1BQ9UPS6 1966 aaKnown RBP7.65□□□□□ -1.18
CPNE4-204ENST00000505331 SHANK2Q9UPX8 1470 aa7.64□□□□□ -1.19
CPNE4-204ENST00000505331 RNF39Q9H2S5 420 aa7.64□□□□□ -1.19
CPNE4-204ENST00000505331 SCAPERQ9BY12 1400 aa7.63□□□□□ -1.19
CPNE4-204ENST00000505331 CNTLNQ9NXG0 1405 aa7.63□□□□□ -1.19
CPNE4-204ENST00000505331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.63□□□□□ -1.19
CPNE4-204ENST00000505331 HNRNPUL2Q1KMD3 747 aaKnown RBP7.63□□□□□ -1.19
CPNE4-204ENST00000505331 CNKSR2Q8WXI2 1034 aa7.63□□□□□ -1.19
CPNE4-204ENST00000505331 ALKQ9UM73 1620 aa7.63□□□□□ -1.19
CPNE4-204ENST00000505331 CFAP74Q9C0B2 1584 aa7.63□□□□□ -1.19
CPNE4-204ENST00000505331 C3P01024 1663 aa7.6□□□□□ -1.19
CPNE4-204ENST00000505331 RNF216Q9NWF9 866 aaPredicted RBP7.6□□□□□ -1.19
CPNE4-204ENST00000505331 AGLP35573 1532 aa7.59□□□□□ -1.19
CPNE4-204ENST00000505331 SETD1AO15047 1707 aaKnown RBP7.59□□□□□ -1.19
CPNE4-204ENST00000505331 PLEKHD1A6NEE1 506 aa7.59□□□□□ -1.19
CPNE4-204ENST00000505331 TRIM52Q96A61 297 aa7.58□□□□□ -1.2
CPNE4-204ENST00000505331 ZRANB1Q9UGI0 708 aa7.58□□□□□ -1.2
CPNE4-204ENST00000505331 ZMYM3Q14202 1370 aa7.58□□□□□ -1.2
CPNE4-204ENST00000505331 REREQ9P2R6 1566 aa7.56□□□□□ -1.2
CPNE4-204ENST00000505331 ZNF772Q68DY9 489 aaPredicted RBP7.56□□□□□ -1.2
CPNE4-204ENST00000505331 RBM33Q96EV2 1170 aaKnown RBP7.56□□□□□ -1.2
CPNE4-204ENST00000505331 MYT1LQ9UL68 1186 aa7.56□□□□□ -1.2
CPNE4-204ENST00000505331 ZNF518AQ6AHZ1 1483 aa7.55□□□□□ -1.2
CPNE4-204ENST00000505331 CEP170BQ9Y4F5 1589 aaPredicted RBP7.54□□□□□ -1.2
CPNE4-204ENST00000505331 PLCH2O75038 1416 aa7.54□□□□□ -1.2
CPNE4-204ENST00000505331 FAM135BQ49AJ0 1406 aa7.54□□□□□ -1.2
CPNE4-204ENST00000505331 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.54□□□□□ -1.2
CPNE4-204ENST00000505331 RXRBP28702 533 aa7.54□□□□□ -1.2
CPNE4-204ENST00000505331 EFCAB2Q5VUJ9 269 aa7.54□□□□□ -1.2
CPNE4-204ENST00000505331 LRRC7Q96NW7 1537 aa7.53□□□□□ -1.2
CPNE4-204ENST00000505331 ANKLE2Q86XL3 938 aa7.53□□□□□ -1.2
CPNE4-204ENST00000505331 AFAP1Q8N556 730 aa7.53□□□□□ -1.2
CPNE4-204ENST00000505331 VWDEQ8N2E2 1590 aa7.53□□□□□ -1.2
CPNE4-204ENST00000505331 CDK12Q9NYV4 1490 aaPredicted RBP7.52□□□□□ -1.21
CPNE4-204ENST00000505331 C1QBPQ07021 282 aaKnown RBP7.52□□□□□ -1.21
CPNE4-204ENST00000505331 P3H3Q8IVL6 736 aa7.52□□□□□ -1.21
CPNE4-204ENST00000505331 RNF17Q9BXT8 1623 aaKnown RBP7.52□□□□□ -1.21
CPNE4-204ENST00000505331 ZNF142P52746 1687 aaPredicted RBP7.51□□□□□ -1.21
CPNE4-204ENST00000505331 A2ML1A8K2U0 1454 aa7.51□□□□□ -1.21
CPNE4-204ENST00000505331 MYO3AQ8NEV4 1616 aa7.51□□□□□ -1.21
CPNE4-204ENST00000505331 DIP2CQ9Y2E4 1556 aa7.5□□□□□ -1.21
CPNE4-204ENST00000505331 KDM5CP41229 1560 aa7.5□□□□□ -1.21
CPNE4-204ENST00000505331 NUP153P49790 1475 aaKnown RBP7.49□□□□□ -1.21
CPNE4-204ENST00000505331 MLH3Q9UHC1 1453 aa7.49□□□□□ -1.21
CPNE4-204ENST00000505331 JCADQ9P266 1359 aa7.49□□□□□ -1.21
CPNE4-204ENST00000505331 NPHP4O75161 1426 aaPredicted RBP7.49□□□□□ -1.21
CPNE4-204ENST00000505331 NEURL4Q96JN8 1562 aa7.49□□□□□ -1.21
CPNE4-204ENST00000505331 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.48□□□□□ -1.21
CPNE4-204ENST00000505331 MEX3CQ5U5Q3 659 aaKnown RBP7.48□□□□□ -1.21
CPNE4-204ENST00000505331 SETBP1Q9Y6X0 1596 aa7.48□□□□□ -1.21
CPNE4-204ENST00000505331 MED14O60244 1454 aa7.48□□□□□ -1.21
CPNE4-204ENST00000505331 MROH2AA6NES4 1674 aa7.47□□□□□ -1.21
CPNE4-204ENST00000505331 THEMISQ8N1K5 641 aaPredicted RBP7.47□□□□□ -1.21
CPNE4-204ENST00000505331 RAPGEF6Q8TEU7 1601 aa7.47□□□□□ -1.21
CPNE4-204ENST00000505331 SPATA31A6Q5VVP1 1343 aa7.47□□□□□ -1.21
CPNE4-204ENST00000505331 SYNMO15061 1565 aa7.46□□□□□ -1.21
CPNE4-204ENST00000505331 DNMT1P26358 1616 aaKnown RBP7.46□□□□□ -1.21
CPNE4-204ENST00000505331 NUTM2BA6NNL0 878 aaPredicted RBP7.45□□□□□ -1.22
CPNE4-204ENST00000505331 NUTM2EB1AL46 878 aaPredicted RBP7.45□□□□□ -1.22
CPNE4-204ENST00000505331 NUTM2DQ5VT03 806 aaPredicted RBP7.45□□□□□ -1.22
CPNE4-204ENST00000505331 NUTM2AQ8IVF1 878 aaPredicted RBP7.45□□□□□ -1.22
CPNE4-204ENST00000505331 CDK13Q14004 1512 aaKnown RBP7.45□□□□□ -1.22
CPNE4-204ENST00000505331 ABCA6Q8N139 1617 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms