RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 GPATCH8Q9UKJ3 1502 aaKnown RBP19.47■□□□□ 0.71
SNCA-208ENST00000505199 EFCAB2Q5VUJ9 269 aa19.47■□□□□ 0.71
SNCA-208ENST00000505199 CDC42BPBQ9Y5S2 1711 aa19.46■□□□□ 0.71
SNCA-208ENST00000505199 KDM6BO15054 1643 aa19.45■□□□□ 0.7
SNCA-208ENST00000505199 ARHGAP5Q13017 1502 aa19.45■□□□□ 0.7
SNCA-208ENST00000505199 KANK4Q5T7N3 995 aaPredicted RBP19.44■□□□□ 0.7
SNCA-208ENST00000505199 AKNAQ7Z591 1439 aa19.43■□□□□ 0.7
SNCA-208ENST00000505199 PLEKHH2Q8IVE3 1493 aa19.42■□□□□ 0.7
SNCA-208ENST00000505199 MIA2Q96PC5 1412 aa19.41■□□□□ 0.7
SNCA-208ENST00000505199 KIAA1107Q9UPP5 1409 aa19.4■□□□□ 0.7
SNCA-208ENST00000505199 CFDP1Q9UEE9 299 aaPredicted RBP19.39■□□□□ 0.69
SNCA-208ENST00000505199 ADGRL1O94910 1474 aa19.39■□□□□ 0.69
SNCA-208ENST00000505199 MYOM3Q5VTT5 1437 aa19.38■□□□□ 0.69
SNCA-208ENST00000505199 DENND4BO75064 1496 aaPredicted RBP19.37■□□□□ 0.69
SNCA-208ENST00000505199 ABCC1P33527 1531 aa19.36■□□□□ 0.69
SNCA-208ENST00000505199 COL17A1Q9UMD9 1497 aaPredicted RBP19.36■□□□□ 0.69
SNCA-208ENST00000505199 ZNF518AQ6AHZ1 1483 aa19.35■□□□□ 0.69
SNCA-208ENST00000505199 ZMYM4Q5VZL5 1548 aa19.34■□□□□ 0.69
SNCA-208ENST00000505199 MAGI2Q86UL8 1455 aa19.34■□□□□ 0.69
SNCA-208ENST00000505199 RICTORQ6R327 1708 aa19.34■□□□□ 0.69
SNCA-208ENST00000505199 POGZQ7Z3K3 1410 aa19.34■□□□□ 0.69
SNCA-208ENST00000505199 SCAPERQ9BY12 1400 aa19.34■□□□□ 0.69
SNCA-208ENST00000505199 SAMD9LQ8IVG5 1584 aa19.33■□□□□ 0.69
SNCA-208ENST00000505199 RSPH4AQ5TD94 716 aa19.33■□□□□ 0.68
SNCA-208ENST00000505199 KDM5CP41229 1560 aa19.31■□□□□ 0.68
SNCA-208ENST00000505199 FRMPD1Q5SYB0 1578 aa19.29■□□□□ 0.68
SNCA-208ENST00000505199 FGD6Q6ZV73 1430 aa19.28■□□□□ 0.68
SNCA-208ENST00000505199 CAMSAP2Q08AD1 1489 aa19.27■□□□□ 0.67
SNCA-208ENST00000505199 ARHGEF5Q12774 1597 aa19.27■□□□□ 0.67
SNCA-208ENST00000505199 TCOF1Q13428 1488 aaKnown RBP19.26■□□□□ 0.67
SNCA-208ENST00000505199 MBD5Q9P267 1494 aa19.26■□□□□ 0.67
SNCA-208ENST00000505199 MLH3Q9UHC1 1453 aa19.26■□□□□ 0.67
SNCA-208ENST00000505199 SYCP2Q9BX26 1530 aa19.25■□□□□ 0.67
SNCA-208ENST00000505199 ARHGEF12Q9NZN5 1544 aa19.25■□□□□ 0.67
SNCA-208ENST00000505199 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.24■□□□□ 0.67
SNCA-208ENST00000505199 RAPGEF3O95398 923 aa19.24■□□□□ 0.67
SNCA-208ENST00000505199 ZNF777Q9ULD5 760 aaPredicted RBP19.23■□□□□ 0.67
SNCA-208ENST00000505199 PTPN23Q9H3S7 1636 aa19.22■□□□□ 0.67
SNCA-208ENST00000505199 HECW2Q9P2P5 1572 aa19.22■□□□□ 0.67
SNCA-208ENST00000505199 CCDC141Q6ZP82 1450 aa19.22■□□□□ 0.67
SNCA-208ENST00000505199 RTEL1-TNFRSF6BF6WH68 1400 aa19.21■□□□□ 0.67
SNCA-208ENST00000505199 TRAPPC8Q9Y2L5 1435 aa19.21■□□□□ 0.67
SNCA-208ENST00000505199 ARHGEF40Q8TER5 1519 aa19.2■□□□□ 0.66
SNCA-208ENST00000505199 ZFYVE16Q7Z3T8 1539 aa19.19■□□□□ 0.66
SNCA-208ENST00000505199 ZNF644Q9H582 1327 aaPredicted RBP19.19■□□□□ 0.66
SNCA-208ENST00000505199 AFAP1Q8N556 730 aa19.18■□□□□ 0.66
SNCA-208ENST00000505199 SHANK2Q9UPX8 1470 aa19.17■□□□□ 0.66
SNCA-208ENST00000505199 REREQ9P2R6 1566 aa19.17■□□□□ 0.66
SNCA-208ENST00000505199 INO80Q9ULG1 1556 aaPredicted RBP19.17■□□□□ 0.66
SNCA-208ENST00000505199 MAST1Q9Y2H9 1570 aa19.16■□□□□ 0.66
SNCA-208ENST00000505199 HNRNPMP52272 730 aaKnown RBP eCLIP19.16■□□□□ 0.66
SNCA-208ENST00000505199 RRBP1Q9P2E9 1410 aaKnown RBP19.16■□□□□ 0.66
SNCA-208ENST00000505199 SPAG9O60271 1321 aaKnown RBP19.15■□□□□ 0.66
SNCA-208ENST00000505199 ATP7AQ04656 1500 aa19.15■□□□□ 0.66
SNCA-208ENST00000505199 DNMT1P26358 1616 aaKnown RBP19.14■□□□□ 0.66
SNCA-208ENST00000505199 KIDINS220Q9ULH0 1771 aa19.14■□□□□ 0.66
SNCA-208ENST00000505199 TSPY4P0CV99 314 aa19.13■□□□□ 0.65
SNCA-208ENST00000505199 TSPY10P0CW01 314 aa19.13■□□□□ 0.65
SNCA-208ENST00000505199 ATP10AO60312 1499 aa19.13■□□□□ 0.65
SNCA-208ENST00000505199 C9orf84Q5VXU9 1444 aa19.11■□□□□ 0.65
SNCA-208ENST00000505199 CROCC2H7BZ55 1655 aa19.11■□□□□ 0.65
SNCA-208ENST00000505199 DIP2CQ9Y2E4 1556 aa19.1■□□□□ 0.65
SNCA-208ENST00000505199 DAPK1P53355 1430 aa19.09■□□□□ 0.65
SNCA-208ENST00000505199 YEATS2Q9ULM3 1422 aa19.09■□□□□ 0.65
SNCA-208ENST00000505199 ADGBQ8N7X0 1667 aa19.09■□□□□ 0.65
SNCA-208ENST00000505199 PLXNC1O60486 1568 aa19.09■□□□□ 0.65
SNCA-208ENST00000505199 ABCC5O15440 1437 aa19.08■□□□□ 0.65
SNCA-208ENST00000505199 AGLP35573 1532 aa19.08■□□□□ 0.64
SNCA-208ENST00000505199 ABCA6Q8N139 1617 aa19.07■□□□□ 0.64
SNCA-208ENST00000505199 ADGRL2O95490 1459 aa19.04■□□□□ 0.64
SNCA-208ENST00000505199 FAM50AQ14320 339 aaKnown RBP19.03■□□□□ 0.64
SNCA-208ENST00000505199 PPARGC1BQ86YN6 1023 aaKnown RBP19.03■□□□□ 0.64
SNCA-208ENST00000505199 MYT1LQ9UL68 1186 aa19.02■□□□□ 0.64
SNCA-208ENST00000505199 ROCK1Q13464 1354 aa19.02■□□□□ 0.64
SNCA-208ENST00000505199 A2MP01023 1474 aa19.02■□□□□ 0.63
SNCA-208ENST00000505199 BCORL1Q5H9F3 1711 aa19.01■□□□□ 0.63
SNCA-208ENST00000505199 DHX29Q7Z478 1369 aaKnown RBP19.01■□□□□ 0.63
SNCA-208ENST00000505199 ANKRD30AQ9BXX3 1397 aa19.01■□□□□ 0.63
SNCA-208ENST00000505199 DUOX2Q9NRD8 1548 aa19■□□□□ 0.63
SNCA-208ENST00000505199 NCOA1Q15788 1441 aa19■□□□□ 0.63
SNCA-208ENST00000505199 EIF2AK4Q9P2K8 1649 aaKnown RBP18.98■□□□□ 0.63
SNCA-208ENST00000505199 FAM135AQ9P2D6 1515 aa18.97■□□□□ 0.63
SNCA-208ENST00000505199 PPP6R1Q9UPN7 881 aa18.97■□□□□ 0.63
SNCA-208ENST00000505199 ERBINQ96RT1 1412 aa18.97■□□□□ 0.63
SNCA-208ENST00000505199 KIF15Q9NS87 1388 aa18.95■□□□□ 0.62
SNCA-208ENST00000505199 SIGLEC1Q9BZZ2 1709 aa18.94■□□□□ 0.62
SNCA-208ENST00000505199 ADAMTSL3P82987 1691 aa18.93■□□□□ 0.62
SNCA-208ENST00000505199 ARID4BQ4LE39 1312 aaPredicted RBP18.92■□□□□ 0.62
SNCA-208ENST00000505199 PTPRKQ15262 1439 aa18.91■□□□□ 0.62
SNCA-208ENST00000505199 RNF17Q9BXT8 1623 aaKnown RBP18.89■□□□□ 0.62
SNCA-208ENST00000505199 CNTLNQ9NXG0 1405 aa18.89■□□□□ 0.61
SNCA-208ENST00000505199 ACIN1Q9UKV3 1341 aaKnown RBP18.87■□□□□ 0.61
SNCA-208ENST00000505199 ANKRD50Q9ULJ7 1429 aa18.87■□□□□ 0.61
SNCA-208ENST00000505199 RRP7BPQ9NSQ0 103 aa18.86■□□□□ 0.61
SNCA-208ENST00000505199 DEPDC5O75140 1603 aa18.85■□□□□ 0.61
SNCA-208ENST00000505199 HFM1A2PYH4 1435 aa18.85■□□□□ 0.61
SNCA-208ENST00000505199 CHIC2Q9UKJ5 165 aa18.85■□□□□ 0.61
SNCA-208ENST00000505199 PRDM15P57071 1507 aaPredicted RBP18.84■□□□□ 0.61
SNCA-208ENST00000505199 KDM5DQ9BY66 1539 aa18.84■□□□□ 0.61
SNCA-208ENST00000505199 FER1L4A9Z1Z3 1794 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms