RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, humanhuman

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-208ENST00000504788 PLEKHD1A6NEE1 506 aa7.83□□□□□ -1.16
LMNB1-208ENST00000504788 TSPOAP1O95153 1857 aa7.83□□□□□ -1.16
LMNB1-208ENST00000504788 PLCH2O75038 1416 aa7.82□□□□□ -1.16
LMNB1-208ENST00000504788 HOXD11P31277 338 aaPredicted RBP7.82□□□□□ -1.16
LMNB1-208ENST00000504788 ATP1B4Q9UN42 357 aaPredicted RBP7.82□□□□□ -1.16
LMNB1-208ENST00000504788 MTUS2Q5JR59 1369 aa7.81□□□□□ -1.16
LMNB1-208ENST00000504788 FAM69CQ0P6D2 419 aa7.81□□□□□ -1.16
LMNB1-208ENST00000504788 COL17A1Q9UMD9 1497 aaPredicted RBP7.81□□□□□ -1.16
LMNB1-208ENST00000504788 CD109Q6YHK3 1445 aa7.81□□□□□ -1.16
LMNB1-208ENST00000504788 ITSN2Q9NZM3 1697 aa7.81□□□□□ -1.16
LMNB1-208ENST00000504788 PHLDB1Q86UU1 1377 aa7.81□□□□□ -1.16
LMNB1-208ENST00000504788 SAMD9LQ8IVG5 1584 aa7.8□□□□□ -1.16
LMNB1-208ENST00000504788 KCNH8Q96L42 1107 aa7.8□□□□□ -1.16
LMNB1-208ENST00000504788 CDK11AQ9UQ88 783 aaPredicted RBP7.8□□□□□ -1.16
LMNB1-208ENST00000504788 ARHGEF12Q9NZN5 1544 aa7.8□□□□□ -1.16
LMNB1-208ENST00000504788 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.8□□□□□ -1.16
LMNB1-208ENST00000504788 HNRNPUL2Q1KMD3 747 aaKnown RBP7.8□□□□□ -1.16
LMNB1-208ENST00000504788 FRMPD1Q5SYB0 1578 aa7.79□□□□□ -1.16
LMNB1-208ENST00000504788 RICTORQ6R327 1708 aa7.79□□□□□ -1.16
LMNB1-208ENST00000504788 NEO1Q92859 1461 aa7.78□□□□□ -1.16
LMNB1-208ENST00000504788 ABCC1P33527 1531 aa7.78□□□□□ -1.16
LMNB1-208ENST00000504788 FANCAO15360 1455 aa7.78□□□□□ -1.16
LMNB1-208ENST00000504788 MYOM3Q5VTT5 1437 aa7.78□□□□□ -1.16
LMNB1-208ENST00000504788 MBD5Q9P267 1494 aa7.77□□□□□ -1.17
LMNB1-208ENST00000504788 TCOF1Q13428 1488 aaKnown RBP7.77□□□□□ -1.17
LMNB1-208ENST00000504788 CFAP74Q9C0B2 1584 aa7.77□□□□□ -1.17
LMNB1-208ENST00000504788 MIA2Q96PC5 1412 aa7.76□□□□□ -1.17
LMNB1-208ENST00000504788 KDM5CP41229 1560 aa7.76□□□□□ -1.17
LMNB1-208ENST00000504788 FGD6Q6ZV73 1430 aa7.76□□□□□ -1.17
LMNB1-208ENST00000504788 TEX14Q8IWB6 1497 aa7.75□□□□□ -1.17
LMNB1-208ENST00000504788 AKNAQ7Z591 1439 aa7.75□□□□□ -1.17
LMNB1-208ENST00000504788 RRBP1Q9P2E9 1410 aaKnown RBP7.75□□□□□ -1.17
LMNB1-208ENST00000504788 ARHGAP5Q13017 1502 aa7.75□□□□□ -1.17
LMNB1-208ENST00000504788 PTPN23Q9H3S7 1636 aa7.75□□□□□ -1.17
LMNB1-208ENST00000504788 CAMSAP2Q08AD1 1489 aa7.74□□□□□ -1.17
LMNB1-208ENST00000504788 CCNB3Q8WWL7 1395 aa7.74□□□□□ -1.17
LMNB1-208ENST00000504788 TRHP20396 242 aaPredicted RBP7.74□□□□□ -1.17
LMNB1-208ENST00000504788 POTEHQ6S545 545 aa7.74□□□□□ -1.17
LMNB1-208ENST00000504788 SYCP2Q9BX26 1530 aa7.74□□□□□ -1.17
LMNB1-208ENST00000504788 KIAA1107Q9UPP5 1409 aa7.74□□□□□ -1.17
LMNB1-208ENST00000504788 ZNF644Q9H582 1327 aaPredicted RBP7.74□□□□□ -1.17
LMNB1-208ENST00000504788 ARHGEF5Q12774 1597 aa7.74□□□□□ -1.17
LMNB1-208ENST00000504788 PPARGC1BQ86YN6 1023 aaKnown RBP7.73□□□□□ -1.17
LMNB1-208ENST00000504788 ZMYM4Q5VZL5 1548 aa7.73□□□□□ -1.17
LMNB1-208ENST00000504788 CROCC2H7BZ55 1655 aa7.73□□□□□ -1.17
LMNB1-208ENST00000504788 POGZQ7Z3K3 1410 aa7.73□□□□□ -1.17
LMNB1-208ENST00000504788 TRAPPC8Q9Y2L5 1435 aa7.73□□□□□ -1.17
LMNB1-208ENST00000504788 SIGLEC1Q9BZZ2 1709 aa7.73□□□□□ -1.17
LMNB1-208ENST00000504788 ADGRL1O94910 1474 aa7.72□□□□□ -1.17
LMNB1-208ENST00000504788 KDM6BO15054 1643 aa7.72□□□□□ -1.17
LMNB1-208ENST00000504788 DNMT1P26358 1616 aaKnown RBP7.72□□□□□ -1.17
LMNB1-208ENST00000504788 KIDINS220Q9ULH0 1771 aa7.72□□□□□ -1.17
LMNB1-208ENST00000504788 APLP2Q06481 763 aa7.72□□□□□ -1.17
LMNB1-208ENST00000504788 INO80Q9ULG1 1556 aaPredicted RBP7.72□□□□□ -1.17
LMNB1-208ENST00000504788 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.72□□□□□ -1.179e-7■■■■□ 23.3
LMNB1-208ENST00000504788 EFCAB2Q5VUJ9 269 aa7.71□□□□□ -1.17
LMNB1-208ENST00000504788 MAST1Q9Y2H9 1570 aa7.71□□□□□ -1.18
LMNB1-208ENST00000504788 PTPRKQ15262 1439 aa7.71□□□□□ -1.18
LMNB1-208ENST00000504788 SCAPERQ9BY12 1400 aa7.71□□□□□ -1.18
LMNB1-208ENST00000504788 CFDP1Q9UEE9 299 aaPredicted RBP7.71□□□□□ -1.18
LMNB1-208ENST00000504788 ZFYVE16Q7Z3T8 1539 aa7.7□□□□□ -1.18
LMNB1-208ENST00000504788 ABCC5O15440 1437 aa7.69□□□□□ -1.18
LMNB1-208ENST00000504788 DENND4BO75064 1496 aaPredicted RBP7.69□□□□□ -1.18
LMNB1-208ENST00000504788 ZNF518AQ6AHZ1 1483 aa7.69□□□□□ -1.18
LMNB1-208ENST00000504788 PLEKHH2Q8IVE3 1493 aa7.69□□□□□ -1.18
LMNB1-208ENST00000504788 MLH3Q9UHC1 1453 aa7.69□□□□□ -1.18
LMNB1-208ENST00000504788 HECW2Q9P2P5 1572 aa7.69□□□□□ -1.18
LMNB1-208ENST00000504788 ABCA6Q8N139 1617 aa7.69□□□□□ -1.18
LMNB1-208ENST00000504788 RAPGEF3O95398 923 aa7.68□□□□□ -1.18
LMNB1-208ENST00000504788 ADGBQ8N7X0 1667 aa7.68□□□□□ -1.18
LMNB1-208ENST00000504788 CCDC141Q6ZP82 1450 aa7.68□□□□□ -1.18
LMNB1-208ENST00000504788 DAPK1P53355 1430 aa7.68□□□□□ -1.18
LMNB1-208ENST00000504788 SHANK2Q9UPX8 1470 aa7.68□□□□□ -1.18
LMNB1-208ENST00000504788 ARHGEF40Q8TER5 1519 aa7.68□□□□□ -1.18
LMNB1-208ENST00000504788 DIP2CQ9Y2E4 1556 aa7.67□□□□□ -1.18
LMNB1-208ENST00000504788 HNRNPMP52272 730 aaKnown RBP eCLIP7.67□□□□□ -1.18
LMNB1-208ENST00000504788 AFAP1Q8N556 730 aa7.67□□□□□ -1.18
LMNB1-208ENST00000504788 YEATS2Q9ULM3 1422 aa7.67□□□□□ -1.18
LMNB1-208ENST00000504788 MAGI2Q86UL8 1455 aa7.67□□□□□ -1.18
LMNB1-208ENST00000504788 PLXNC1O60486 1568 aa7.67□□□□□ -1.18
LMNB1-208ENST00000504788 REREQ9P2R6 1566 aa7.67□□□□□ -1.18
LMNB1-208ENST00000504788 RNF216Q9NWF9 866 aaPredicted RBP7.66□□□□□ -1.18
LMNB1-208ENST00000504788 RTEL1-TNFRSF6BF6WH68 1400 aa7.66□□□□□ -1.18
LMNB1-208ENST00000504788 ADGRL2O95490 1459 aa7.66□□□□□ -1.18
LMNB1-208ENST00000504788 ATP7AQ04656 1500 aa7.66□□□□□ -1.18
LMNB1-208ENST00000504788 BCORL1Q5H9F3 1711 aa7.65□□□□□ -1.18
LMNB1-208ENST00000504788 ZNF777Q9ULD5 760 aaPredicted RBP7.64□□□□□ -1.19
LMNB1-208ENST00000504788 NCOA1Q15788 1441 aa7.64□□□□□ -1.19
LMNB1-208ENST00000504788 RSPH4AQ5TD94 716 aa7.64□□□□□ -1.19
LMNB1-208ENST00000504788 C9orf84Q5VXU9 1444 aa7.63□□□□□ -1.19
LMNB1-208ENST00000504788 MROH1Q8NDA8 1641 aa7.62□□□□□ -1.19
LMNB1-208ENST00000504788 AGLP35573 1532 aa7.62□□□□□ -1.19
LMNB1-208ENST00000504788 GCC2Q8IWJ2 1684 aa7.62□□□□□ -1.19
LMNB1-208ENST00000504788 CNKSR2Q8WXI2 1034 aa7.62□□□□□ -1.19
LMNB1-208ENST00000504788 ROCK1Q13464 1354 aa7.61□□□□□ -1.19
LMNB1-208ENST00000504788 DEPDC5O75140 1603 aa7.61□□□□□ -1.19
LMNB1-208ENST00000504788 EIF2AK4Q9P2K8 1649 aaKnown RBP7.61□□□□□ -1.19
LMNB1-208ENST00000504788 PPP4R3CPQ6ZMV5 832 aa7.61□□□□□ -1.19
LMNB1-208ENST00000504788 ATP10AO60312 1499 aa7.6□□□□□ -1.19
LMNB1-208ENST00000504788 RNF17Q9BXT8 1623 aaKnown RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms