RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ROCK1Q13464 1354 aa11.98□□□□□ -0.49
USP54-215ENST00000497106 AKNAQ7Z591 1439 aa11.97□□□□□ -0.49
USP54-215ENST00000497106 NEUROD1Q13562 356 aa11.97□□□□□ -0.49
USP54-215ENST00000497106 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
USP54-215ENST00000497106 SLC4A1APQ9BWU0 796 aaKnown RBP11.96□□□□□ -0.5
USP54-215ENST00000497106 DAPK1P53355 1430 aa11.95□□□□□ -0.5
USP54-215ENST00000497106 CAMSAP2Q08AD1 1489 aa11.95□□□□□ -0.5
USP54-215ENST00000497106 GPATCH8Q9UKJ3 1502 aaKnown RBP11.94□□□□□ -0.5
USP54-215ENST00000497106 CYB5RLQ6IPT4 315 aa11.94□□□□□ -0.5
USP54-215ENST00000497106 KANK1Q14678 1352 aa11.93□□□□□ -0.5
USP54-215ENST00000497106 WDR7Q9Y4E6 1490 aa11.93□□□□□ -0.5
USP54-215ENST00000497106 DHX57Q6P158 1386 aaKnown RBP11.93□□□□□ -0.5
USP54-215ENST00000497106 SPAG9O60271 1321 aaKnown RBP11.93□□□□□ -0.5
USP54-215ENST00000497106 ARHGEF11O15085 1522 aa11.93□□□□□ -0.5
USP54-215ENST00000497106 HNRNPMP52272 730 aaKnown RBP eCLIP11.92□□□□□ -0.5
USP54-215ENST00000497106 KDM5BQ9UGL1 1544 aa11.92□□□□□ -0.5
USP54-215ENST00000497106 CCDC141Q6ZP82 1450 aa11.92□□□□□ -0.5
USP54-215ENST00000497106 ADCY10Q96PN6 1610 aa11.9□□□□□ -0.5
USP54-215ENST00000497106 C9orf84Q5VXU9 1444 aa11.9□□□□□ -0.5
USP54-215ENST00000497106 PLCH2O75038 1416 aa11.89□□□□□ -0.51
USP54-215ENST00000497106 KIAA1107Q9UPP5 1409 aa11.89□□□□□ -0.51
USP54-215ENST00000497106 MAGI3Q5TCQ9 1506 aa11.89□□□□□ -0.51
USP54-215ENST00000497106 ZNF316A6NFI3 1004 aaPredicted RBP11.89□□□□□ -0.51
USP54-215ENST00000497106 SHANK2Q9UPX8 1470 aa11.88□□□□□ -0.51
USP54-215ENST00000497106 ABCC5O15440 1437 aa11.88□□□□□ -0.51
USP54-215ENST00000497106 ASXL2Q76L83 1435 aa11.88□□□□□ -0.51
USP54-215ENST00000497106 ZNF644Q9H582 1327 aaPredicted RBP11.88□□□□□ -0.51
USP54-215ENST00000497106 KIF15Q9NS87 1388 aa11.87□□□□□ -0.51
USP54-215ENST00000497106 ANKRD50Q9ULJ7 1429 aa11.87□□□□□ -0.51
USP54-215ENST00000497106 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP54-215ENST00000497106 MPHOSPH9Q99550 1183 aa11.86□□□□□ -0.51
USP54-215ENST00000497106 NAIPQ13075 1403 aa11.86□□□□□ -0.51
USP54-215ENST00000497106 ABCC10Q5T3U5 1492 aa11.85□□□□□ -0.51
USP54-215ENST00000497106 NUP155O75694 1391 aa11.85□□□□□ -0.51
USP54-215ENST00000497106 DNMT1P26358 1616 aaKnown RBP11.85□□□□□ -0.51
USP54-215ENST00000497106 ESF1Q9H501 851 aaKnown RBP11.85□□□□□ -0.51
USP54-215ENST00000497106 CD109Q6YHK3 1445 aa11.84□□□□□ -0.51
USP54-215ENST00000497106 ZCCHC11Q5TAX3 1644 aaKnown RBP11.84□□□□□ -0.51
USP54-215ENST00000497106 ERCC6L2Q5T890 1561 aa11.83□□□□□ -0.52
USP54-215ENST00000497106 ARAP3Q8WWN8 1544 aa11.82□□□□□ -0.52
USP54-215ENST00000497106 FANCAO15360 1455 aa11.82□□□□□ -0.52
USP54-215ENST00000497106 ARHGEF5Q12774 1597 aa11.82□□□□□ -0.52
USP54-215ENST00000497106 ADGRL2O95490 1459 aa11.81□□□□□ -0.52
USP54-215ENST00000497106 FAM69CQ0P6D2 419 aa11.81□□□□□ -0.52
USP54-215ENST00000497106 CFAP74Q9C0B2 1584 aa11.81□□□□□ -0.52
USP54-215ENST00000497106 ADGRL1O94910 1474 aa11.81□□□□□ -0.52
USP54-215ENST00000497106 NCOA1Q15788 1441 aa11.8□□□□□ -0.52
USP54-215ENST00000497106 SCAPERQ9BY12 1400 aa11.8□□□□□ -0.52
USP54-215ENST00000497106 PKD2Q13563 968 aa11.8□□□□□ -0.52
USP54-215ENST00000497106 MYO5CQ9NQX4 1742 aa11.8□□□□□ -0.52
USP54-215ENST00000497106 PREX2Q70Z35 1606 aa11.79□□□□□ -0.52
USP54-215ENST00000497106 TEX14Q8IWB6 1497 aa11.79□□□□□ -0.52
USP54-215ENST00000497106 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP54-215ENST00000497106 LRRIQ1Q96JM4 1722 aa11.78□□□□□ -0.52
USP54-215ENST00000497106 RTEL1-TNFRSF6BF6WH68 1400 aa11.78□□□□□ -0.52
USP54-215ENST00000497106 DIEXFQ68CQ4 756 aaKnown RBP11.78□□□□□ -0.52
USP54-215ENST00000497106 SYCP2Q9BX26 1530 aa11.76□□□□□ -0.53
USP54-215ENST00000497106 ADGBQ8N7X0 1667 aa11.76□□□□□ -0.53
USP54-215ENST00000497106 PTPRKQ15262 1439 aa11.76□□□□□ -0.53
USP54-215ENST00000497106 DUOX2Q9NRD8 1548 aa11.76□□□□□ -0.53
USP54-215ENST00000497106 SIN3AQ96ST3 1273 aa11.75□□□□□ -0.53
USP54-215ENST00000497106 ERBINQ96RT1 1412 aa11.75□□□□□ -0.53
USP54-215ENST00000497106 GCC2Q8IWJ2 1684 aa11.75□□□□□ -0.53
USP54-215ENST00000497106 KIF3BO15066 747 aa11.75□□□□□ -0.53
USP54-215ENST00000497106 DENND4BO75064 1496 aaPredicted RBP11.75□□□□□ -0.53
USP54-215ENST00000497106 ZNF518AQ6AHZ1 1483 aa11.75□□□□□ -0.53
USP54-215ENST00000497106 MAPKBP1O60336 1514 aa11.74□□□□□ -0.53
USP54-215ENST00000497106 NEO1Q92859 1461 aa11.74□□□□□ -0.53
USP54-215ENST00000497106 ZNF326Q5BKZ1 582 aaKnown RBP11.74□□□□□ -0.53
USP54-215ENST00000497106 TTC37Q6PGP7 1564 aa11.73□□□□□ -0.53
USP54-215ENST00000497106 AFAP1Q8N556 730 aa11.72□□□□□ -0.53
USP54-215ENST00000497106 CCDC144AA2RUR9 1427 aa11.72□□□□□ -0.53
USP54-215ENST00000497106 EIF4G2P78344 907 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP54-215ENST00000497106 STAC3Q96MF2 364 aa11.71□□□□□ -0.53
USP54-215ENST00000497106 TRHP20396 242 aaPredicted RBP11.71□□□□□ -0.53
USP54-215ENST00000497106 CDC42BPAQ5VT25 1732 aa11.71□□□□□ -0.53
USP54-215ENST00000497106 PPP1R15AO75807 674 aaPredicted RBP11.7□□□□□ -0.54
USP54-215ENST00000497106 CENPBP07199 599 aaPredicted RBP11.7□□□□□ -0.54
USP54-215ENST00000497106 SAMD9LQ8IVG5 1584 aa11.7□□□□□ -0.54
USP54-215ENST00000497106 ABCC1P33527 1531 aa11.7□□□□□ -0.54
USP54-215ENST00000497106 MAST1Q9Y2H9 1570 aa11.69□□□□□ -0.54
USP54-215ENST00000497106 ABCA9Q8IUA7 1624 aa11.69□□□□□ -0.54
USP54-215ENST00000497106 MBD5Q9P267 1494 aa11.69□□□□□ -0.54
USP54-215ENST00000497106 STAG3Q9UJ98 1225 aa11.69□□□□□ -0.54
USP54-215ENST00000497106 DHX29Q7Z478 1369 aaKnown RBP11.68□□□□□ -0.54
USP54-215ENST00000497106 GGT6Q6P531 493 aa11.67□□□□□ -0.54
USP54-215ENST00000497106 SLC24A1O60721 1099 aa11.67□□□□□ -0.54
USP54-215ENST00000497106 CHGAP10645 457 aaKnown RBP11.67□□□□□ -0.54
USP54-215ENST00000497106 WASHC2CQ9Y4E1 1318 aa11.67□□□□□ -0.54
USP54-215ENST00000497106 TRAPPC8Q9Y2L5 1435 aa11.66□□□□□ -0.54
USP54-215ENST00000497106 ARID4BQ4LE39 1312 aaPredicted RBP11.66□□□□□ -0.54
USP54-215ENST00000497106 RIMBP3CA6NJZ7 1639 aa11.66□□□□□ -0.54
USP54-215ENST00000497106 RIMBP3BA6NNM3 1639 aa11.66□□□□□ -0.54
USP54-215ENST00000497106 RIMBP3Q9UFD9 1639 aa11.66□□□□□ -0.54
USP54-215ENST00000497106 CROCC2H7BZ55 1655 aa11.65□□□□□ -0.54
USP54-215ENST00000497106 ATP7AQ04656 1500 aa11.65□□□□□ -0.54
USP54-215ENST00000497106 POGZQ7Z3K3 1410 aa11.64□□□□□ -0.55
USP54-215ENST00000497106 PLXNC1O60486 1568 aa11.64□□□□□ -0.55
USP54-215ENST00000497106 FOXD1Q16676 465 aa11.64□□□□□ -0.55
USP54-215ENST00000497106 PPP6R1Q9UPN7 881 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms