RNA–Protein interactions for RNA: ENST00000496462.1

U2AF1-212, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 3,973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-212ENST00000496462 LRRC9Q6ZRR7 1453 aa12.79□□□□□ -0.36
U2AF1-212ENST00000496462 TRIM26Q12899 539 aaPredicted RBP12.78□□□□□ -0.36
U2AF1-212ENST00000496462 KANK4Q5T7N3 995 aaPredicted RBP12.78□□□□□ -0.36
U2AF1-212ENST00000496462 MLECQ14165 292 aa12.77□□□□□ -0.36
U2AF1-212ENST00000496462 MAGI3Q5TCQ9 1506 aa12.77□□□□□ -0.37
U2AF1-212ENST00000496462 MAP3K4Q9Y6R4 1608 aa12.76□□□□□ -0.37
U2AF1-212ENST00000496462 TIAM1Q13009 1591 aa12.76□□□□□ -0.37
U2AF1-212ENST00000496462 KDM4FA0A1W2PPD8 638 aa12.75□□□□□ -0.37
U2AF1-212ENST00000496462 NCOA2Q15596 1464 aa12.75□□□□□ -0.37
U2AF1-212ENST00000496462 FANCAO15360 1455 aa12.74□□□□□ -0.37
U2AF1-212ENST00000496462 TRIM52Q96A61 297 aa12.74□□□□□ -0.37
U2AF1-212ENST00000496462 CFAP43Q8NDM7 1665 aa12.74□□□□□ -0.37
U2AF1-212ENST00000496462 MYOM3Q5VTT5 1437 aa12.74□□□□□ -0.37
U2AF1-212ENST00000496462 MIA2Q96PC5 1412 aa12.73□□□□□ -0.37
U2AF1-212ENST00000496462 PLCH2O75038 1416 aa12.73□□□□□ -0.37
U2AF1-212ENST00000496462 AKNAQ7Z591 1439 aa12.73□□□□□ -0.37
U2AF1-212ENST00000496462 HNRNPMP52272 730 aaKnown RBP eCLIP12.73□□□□□ -0.37
U2AF1-212ENST00000496462 PPRC1Q5VV67 1664 aaKnown RBP12.73□□□□□ -0.37
U2AF1-212ENST00000496462 SCAPERQ9BY12 1400 aa12.72□□□□□ -0.37
U2AF1-212ENST00000496462 SUPT6HQ7KZ85 1726 aaKnown RBP12.72□□□□□ -0.37
U2AF1-212ENST00000496462 DENND4BO75064 1496 aaPredicted RBP12.72□□□□□ -0.37
U2AF1-212ENST00000496462 CHIC2Q9UKJ5 165 aa12.72□□□□□ -0.37
U2AF1-212ENST00000496462 ANKRD30AQ9BXX3 1397 aa12.71□□□□□ -0.37
U2AF1-212ENST00000496462 AFAP1Q8N556 730 aa12.71□□□□□ -0.38
U2AF1-212ENST00000496462 NEO1Q92859 1461 aa12.7□□□□□ -0.38
U2AF1-212ENST00000496462 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.7□□□□□ -0.389e-12■■■■■ 76.3
U2AF1-212ENST00000496462 KANK1Q14678 1352 aa12.7□□□□□ -0.38
U2AF1-212ENST00000496462 ABCA9Q8IUA7 1624 aa12.7□□□□□ -0.38
U2AF1-212ENST00000496462 POGZQ7Z3K3 1410 aa12.69□□□□□ -0.38
U2AF1-212ENST00000496462 ADGRL1O94910 1474 aa12.69□□□□□ -0.38
U2AF1-212ENST00000496462 TTC37Q6PGP7 1564 aa12.67□□□□□ -0.38
U2AF1-212ENST00000496462 CFAP74Q9C0B2 1584 aa12.66□□□□□ -0.38
U2AF1-212ENST00000496462 FGD6Q6ZV73 1430 aa12.66□□□□□ -0.38
U2AF1-212ENST00000496462 ARAP3Q8WWN8 1544 aa12.65□□□□□ -0.38
U2AF1-212ENST00000496462 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.65□□□□□ -0.38
U2AF1-212ENST00000496462 RRP7BPQ9NSQ0 103 aa12.63□□□□□ -0.39
U2AF1-212ENST00000496462 KIAA1107Q9UPP5 1409 aa12.63□□□□□ -0.39
U2AF1-212ENST00000496462 GPATCH8Q9UKJ3 1502 aaKnown RBP12.62□□□□□ -0.39
U2AF1-212ENST00000496462 PCGF6Q9BYE7 350 aa12.62□□□□□ -0.39
U2AF1-212ENST00000496462 STAG3Q9UJ98 1225 aa12.62□□□□□ -0.39
U2AF1-212ENST00000496462 ITSN2Q9NZM3 1697 aa12.62□□□□□ -0.39
U2AF1-212ENST00000496462 GGT6Q6P531 493 aa12.62□□□□□ -0.39
U2AF1-212ENST00000496462 ZNF518AQ6AHZ1 1483 aa12.61□□□□□ -0.39
U2AF1-212ENST00000496462 KIF3BO15066 747 aa12.61□□□□□ -0.39
U2AF1-212ENST00000496462 YEATS2Q9ULM3 1422 aa12.6□□□□□ -0.39
U2AF1-212ENST00000496462 ZNF644Q9H582 1327 aaPredicted RBP12.6□□□□□ -0.39
U2AF1-212ENST00000496462 CCDC141Q6ZP82 1450 aa12.6□□□□□ -0.39
U2AF1-212ENST00000496462 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.58□□□□□ -0.391e-7■■■■■ 38.4
U2AF1-212ENST00000496462 PPP6R1Q9UPN7 881 aa12.57□□□□□ -0.4
U2AF1-212ENST00000496462 CAMSAP2Q08AD1 1489 aa12.56□□□□□ -0.4
U2AF1-212ENST00000496462 WASHC2CQ9Y4E1 1318 aa12.56□□□□□ -0.4
U2AF1-212ENST00000496462 MYO5CQ9NQX4 1742 aa12.56□□□□□ -0.4
U2AF1-212ENST00000496462 TRAPPC8Q9Y2L5 1435 aa12.56□□□□□ -0.4
U2AF1-212ENST00000496462 ZFYVE16Q7Z3T8 1539 aa12.55□□□□□ -0.4
U2AF1-212ENST00000496462 C9orf84Q5VXU9 1444 aa12.55□□□□□ -0.4
U2AF1-212ENST00000496462 MAGI2Q86UL8 1455 aa12.55□□□□□ -0.4
U2AF1-212ENST00000496462 KIF15Q9NS87 1388 aa12.55□□□□□ -0.4
U2AF1-212ENST00000496462 LRRIQ1Q96JM4 1722 aa12.54□□□□□ -0.4
U2AF1-212ENST00000496462 CEBPAP49715 358 aaPredicted RBP12.54□□□□□ -0.4
U2AF1-212ENST00000496462 CCER1Q8TC90 406 aaPredicted RBP12.54□□□□□ -0.4
U2AF1-212ENST00000496462 HDGFP51858 240 aaKnown RBP12.52□□□□□ -0.4
U2AF1-212ENST00000496462 SLC4A1APQ9BWU0 796 aaKnown RBP12.52□□□□□ -0.4
U2AF1-212ENST00000496462 RTEL1-TNFRSF6BF6WH68 1400 aa12.52□□□□□ -0.41
U2AF1-212ENST00000496462 ATP10AO60312 1499 aa12.51□□□□□ -0.41
U2AF1-212ENST00000496462 FRMPD1Q5SYB0 1578 aa12.51□□□□□ -0.41
U2AF1-212ENST00000496462 DAPK1P53355 1430 aa12.5□□□□□ -0.41
U2AF1-212ENST00000496462 RRBP1Q9P2E9 1410 aaKnown RBP12.5□□□□□ -0.41
U2AF1-212ENST00000496462 CHGAP10645 457 aaKnown RBP12.5□□□□□ -0.41
U2AF1-212ENST00000496462 BCANQ96GW7 911 aa12.49□□□□□ -0.41
U2AF1-212ENST00000496462 PTPN23Q9H3S7 1636 aa12.49□□□□□ -0.41
U2AF1-212ENST00000496462 SYCP2Q9BX26 1530 aa12.49□□□□□ -0.41
U2AF1-212ENST00000496462 HSPA2P54652 639 aa12.49□□□□□ -0.41
U2AF1-212ENST00000496462 ARHGEF40Q8TER5 1519 aa12.48□□□□□ -0.41
U2AF1-212ENST00000496462 ARHGEF12Q9NZN5 1544 aa12.48□□□□□ -0.41
U2AF1-212ENST00000496462 ROCK1Q13464 1354 aa12.48□□□□□ -0.41
U2AF1-212ENST00000496462 DHX29Q7Z478 1369 aaKnown RBP12.48□□□□□ -0.41
U2AF1-212ENST00000496462 NUP155O75694 1391 aa12.47□□□□□ -0.41
U2AF1-212ENST00000496462 SETD5Q9C0A6 1442 aa12.47□□□□□ -0.41
U2AF1-212ENST00000496462 ANKRD50Q9ULJ7 1429 aa12.47□□□□□ -0.41
U2AF1-212ENST00000496462 PTPRMP28827 1452 aa12.47□□□□□ -0.41
U2AF1-212ENST00000496462 RICTORQ6R327 1708 aa12.47□□□□□ -0.41
U2AF1-212ENST00000496462 PREX2Q70Z35 1606 aa12.47□□□□□ -0.41
U2AF1-212ENST00000496462 CDC42BPBQ9Y5S2 1711 aa12.46□□□□□ -0.42
U2AF1-212ENST00000496462 TCOF1Q13428 1488 aaKnown RBP12.45□□□□□ -0.42
U2AF1-212ENST00000496462 ABCC1P33527 1531 aa12.45□□□□□ -0.42
U2AF1-212ENST00000496462 A2MP01023 1474 aa12.45□□□□□ -0.42
U2AF1-212ENST00000496462 HRCP23327 699 aa12.45□□□□□ -0.42
U2AF1-212ENST00000496462 ABCC5O15440 1437 aa12.45□□□□□ -0.42
U2AF1-212ENST00000496462 SHANK2Q9UPX8 1470 aa12.45□□□□□ -0.42
U2AF1-212ENST00000496462 MLH3Q9UHC1 1453 aa12.44□□□□□ -0.42
U2AF1-212ENST00000496462 PPP1R15AO75807 674 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-212ENST00000496462 ZMYM4Q5VZL5 1548 aa12.44□□□□□ -0.42
U2AF1-212ENST00000496462 CDC42BPAQ5VT25 1732 aa12.44□□□□□ -0.42
U2AF1-212ENST00000496462 SAMD9LQ8IVG5 1584 aa12.43□□□□□ -0.42
U2AF1-212ENST00000496462 CNTLNQ9NXG0 1405 aa12.43□□□□□ -0.42
U2AF1-212ENST00000496462 MADDQ8WXG6 1647 aa12.42□□□□□ -0.42
U2AF1-212ENST00000496462 HECW2Q9P2P5 1572 aa12.42□□□□□ -0.42
U2AF1-212ENST00000496462 ARHGEF5Q12774 1597 aa12.42□□□□□ -0.42
U2AF1-212ENST00000496462 ZNF326Q5BKZ1 582 aaKnown RBP12.41□□□□□ -0.42
U2AF1-212ENST00000496462 ATP7AQ04656 1500 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 490.7 ms