RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 MYO5CQ9NQX4 1742 aa20.45■□□□□ 0.86
PTPRF-214ENST00000496043 ARHGAP5Q13017 1502 aa20.45■□□□□ 0.86
PTPRF-214ENST00000496043 MYT1LQ9UL68 1186 aa20.45■□□□□ 0.86
PTPRF-214ENST00000496043 YEATS2Q9ULM3 1422 aa20.44■□□□□ 0.86
PTPRF-214ENST00000496043 ZMYM4Q5VZL5 1548 aa20.44■□□□□ 0.86
PTPRF-214ENST00000496043 ZFYVE16Q7Z3T8 1539 aa20.43■□□□□ 0.86
PTPRF-214ENST00000496043 ARHGEF40Q8TER5 1519 aa20.43■□□□□ 0.86
PTPRF-214ENST00000496043 ADAMTSL3P82987 1691 aa20.42■□□□□ 0.86
PTPRF-214ENST00000496043 PTPRMP28827 1452 aa20.42■□□□□ 0.86
PTPRF-214ENST00000496043 ATP10AO60312 1499 aa20.4■□□□□ 0.86
PTPRF-214ENST00000496043 MLECQ14165 292 aa20.4■□□□□ 0.86
PTPRF-214ENST00000496043 BCORL1Q5H9F3 1711 aa20.39■□□□□ 0.86
PTPRF-214ENST00000496043 ZNF518AQ6AHZ1 1483 aa20.39■□□□□ 0.85
PTPRF-214ENST00000496043 LOC105371045A0A1W2PR82 267 aa20.39■□□□□ 0.85
PTPRF-214ENST00000496043 ZNF777Q9ULD5 760 aaPredicted RBP20.39■□□□□ 0.85
PTPRF-214ENST00000496043 CEP162Q5TB80 1403 aa20.37■□□□□ 0.85
PTPRF-214ENST00000496043 HECW2Q9P2P5 1572 aa20.37■□□□□ 0.85
PTPRF-214ENST00000496043 MTUS2Q5JR59 1369 aa20.35■□□□□ 0.85
PTPRF-214ENST00000496043 CDC42BPBQ9Y5S2 1711 aa20.34■□□□□ 0.85
PTPRF-214ENST00000496043 CFDP1Q9UEE9 299 aaPredicted RBP20.34■□□□□ 0.85
PTPRF-214ENST00000496043 PLPPR3Q6T4P5 718 aa20.33■□□□□ 0.85
PTPRF-214ENST00000496043 C9orf84Q5VXU9 1444 aa20.33■□□□□ 0.84
PTPRF-214ENST00000496043 CCNB3Q8WWL7 1395 aa20.33■□□□□ 0.84
PTPRF-214ENST00000496043 MADDQ8WXG6 1647 aa20.32■□□□□ 0.84
PTPRF-214ENST00000496043 TRAPPC8Q9Y2L5 1435 aa20.32■□□□□ 0.84
PTPRF-214ENST00000496043 GPATCH8Q9UKJ3 1502 aaKnown RBP20.32■□□□□ 0.84
PTPRF-214ENST00000496043 HNRNPMP52272 730 aaKnown RBP eCLIP20.31■□□□□ 0.844e-6■■■■□ 24.6
PTPRF-214ENST00000496043 PREX2Q70Z35 1606 aa20.31■□□□□ 0.84
PTPRF-214ENST00000496043 ARHGEF12Q9NZN5 1544 aa20.3■□□□□ 0.84
PTPRF-214ENST00000496043 MLH3Q9UHC1 1453 aa20.3■□□□□ 0.84
PTPRF-214ENST00000496043 KDM5CP41229 1560 aa20.29■□□□□ 0.84
PTPRF-214ENST00000496043 ABCC1P33527 1531 aa20.27■□□□□ 0.83
PTPRF-214ENST00000496043 CDC42BPAQ5VT25 1732 aa20.26■□□□□ 0.83
PTPRF-214ENST00000496043 RIMS1Q86UR5 1692 aaKnown RBP20.26■□□□□ 0.83
PTPRF-214ENST00000496043 SPAG9O60271 1321 aaKnown RBP20.25■□□□□ 0.83
PTPRF-214ENST00000496043 SIGLEC1Q9BZZ2 1709 aa20.24■□□□□ 0.83
PTPRF-214ENST00000496043 KIAA1107Q9UPP5 1409 aa20.23■□□□□ 0.83
PTPRF-214ENST00000496043 PLEKHH2Q8IVE3 1493 aa20.23■□□□□ 0.83
PTPRF-214ENST00000496043 ESF1Q9H501 851 aaKnown RBP20.22■□□□□ 0.83
PTPRF-214ENST00000496043 CEBPAP49715 358 aaPredicted RBP20.21■□□□□ 0.83
PTPRF-214ENST00000496043 ITSN2Q9NZM3 1697 aa20.2■□□□□ 0.82
PTPRF-214ENST00000496043 DIP2CQ9Y2E4 1556 aa20.2■□□□□ 0.82
PTPRF-214ENST00000496043 SAMD9LQ8IVG5 1584 aa20.19■□□□□ 0.82
PTPRF-214ENST00000496043 ZNF644Q9H582 1327 aaPredicted RBP20.19■□□□□ 0.82
PTPRF-214ENST00000496043 EHBP1L1Q8N3D4 1523 aa20.18■□□□□ 0.82
PTPRF-214ENST00000496043 REREQ9P2R6 1566 aa20.17■□□□□ 0.82
PTPRF-214ENST00000496043 SYCP2Q9BX26 1530 aa20.17■□□□□ 0.82
PTPRF-214ENST00000496043 HSPA2P54652 639 aa20.16■□□□□ 0.82
PTPRF-214ENST00000496043 VPS8Q8N3P4 1428 aa20.16■□□□□ 0.82
PTPRF-214ENST00000496043 LMTK3Q96Q04 1460 aa20.16■□□□□ 0.82
PTPRF-214ENST00000496043 AGLP35573 1532 aa20.16■□□□□ 0.82
PTPRF-214ENST00000496043 ABCA6Q8N139 1617 aa20.15■□□□□ 0.82
PTPRF-214ENST00000496043 FER1L4A9Z1Z3 1794 aa20.15■□□□□ 0.82
PTPRF-214ENST00000496043 KIDINS220Q9ULH0 1771 aa20.14■□□□□ 0.81
PTPRF-214ENST00000496043 RSPH4AQ5TD94 716 aa20.14■□□□□ 0.81
PTPRF-214ENST00000496043 ILDR1Q86SU0 546 aaPredicted RBP20.14■□□□□ 0.81
PTPRF-214ENST00000496043 TIAM1Q13009 1591 aa20.12■□□□□ 0.81
PTPRF-214ENST00000496043 NCOA2Q15596 1464 aa20.11■□□□□ 0.81
PTPRF-214ENST00000496043 MBD5Q9P267 1494 aa20.09■□□□□ 0.81
PTPRF-214ENST00000496043 APLP2Q06481 763 aa20.08■□□□□ 0.81
PTPRF-214ENST00000496043 KANK4Q5T7N3 995 aaPredicted RBP20.08■□□□□ 0.81
PTPRF-214ENST00000496043 ATP7AQ04656 1500 aa20.07■□□□□ 0.8
PTPRF-214ENST00000496043 A2MP01023 1474 aa20.07■□□□□ 0.8
PTPRF-214ENST00000496043 GGT6Q6P531 493 aa20.07■□□□□ 0.8
PTPRF-214ENST00000496043 CNTLNQ9NXG0 1405 aa20.07■□□□□ 0.8
PTPRF-214ENST00000496043 LRRC9Q6ZRR7 1453 aa20.06■□□□□ 0.8
PTPRF-214ENST00000496043 RTEL1-TNFRSF6BF6WH68 1400 aa20.06■□□□□ 0.8
PTPRF-214ENST00000496043 TSPY4P0CV99 314 aa20.06■□□□□ 0.8
PTPRF-214ENST00000496043 TSPY10P0CW01 314 aa20.06■□□□□ 0.8
PTPRF-214ENST00000496043 SUPT6HQ7KZ85 1726 aaKnown RBP20.06■□□□□ 0.8
PTPRF-214ENST00000496043 PPP6R1Q9UPN7 881 aa20.05■□□□□ 0.8
PTPRF-214ENST00000496043 MAP3K1Q13233 1512 aa20.03■□□□□ 0.8
PTPRF-214ENST00000496043 SETD1BQ9UPS6 1966 aaKnown RBP20.03■□□□□ 0.8
PTPRF-214ENST00000496043 ZMYM3Q14202 1370 aa20.03■□□□□ 0.8
PTPRF-214ENST00000496043 UHRF1BP1Q6BDS2 1440 aa20.02■□□□□ 0.8
PTPRF-214ENST00000496043 DHX29Q7Z478 1369 aaKnown RBP20.02■□□□□ 0.8
PTPRF-214ENST00000496043 INO80Q9ULG1 1556 aaPredicted RBP20.01■□□□□ 0.79
PTPRF-214ENST00000496043 DMRT2Q9Y5R5 561 aa20■□□□□ 0.79
PTPRF-214ENST00000496043 CAMSAP2Q08AD1 1489 aa19.99■□□□□ 0.79
PTPRF-214ENST00000496043 CCDC141Q6ZP82 1450 aa19.99■□□□□ 0.79
PTPRF-214ENST00000496043 KIF3BO15066 747 aa19.97■□□□□ 0.79
PTPRF-214ENST00000496043 FBXO41Q8TF61 875 aa19.97■□□□□ 0.79
PTPRF-214ENST00000496043 PREX1Q8TCU6 1659 aa19.97■□□□□ 0.79
PTPRF-214ENST00000496043 C3P01024 1663 aa19.96■□□□□ 0.79
PTPRF-214ENST00000496043 PLXNC1O60486 1568 aa19.95■□□□□ 0.78
PTPRF-214ENST00000496043 ADGBQ8N7X0 1667 aa19.94■□□□□ 0.78
PTPRF-214ENST00000496043 NPATQ14207 1427 aa19.93■□□□□ 0.78
PTPRF-214ENST00000496043 MIA2Q96PC5 1412 aa19.93■□□□□ 0.78
PTPRF-214ENST00000496043 MYOM3Q5VTT5 1437 aa19.92■□□□□ 0.78
PTPRF-214ENST00000496043 ARHGEF5Q12774 1597 aa19.91■□□□□ 0.78
PTPRF-214ENST00000496043 MROH2AA6NES4 1674 aa19.89■□□□□ 0.77
PTPRF-214ENST00000496043 WASHC2CQ9Y4E1 1318 aa19.89■□□□□ 0.77
PTPRF-214ENST00000496043 CERKQ8TCT0 537 aa19.88■□□□□ 0.77
PTPRF-214ENST00000496043 CLTCQ00610 1675 aaKnown RBP19.87■□□□□ 0.77
PTPRF-214ENST00000496043 PTPRKQ15262 1439 aa19.86■□□□□ 0.77
PTPRF-214ENST00000496043 FBXO31Q5XUX0 539 aaPredicted RBP19.83■□□□□ 0.77
PTPRF-214ENST00000496043 PTPRTO14522 1441 aa19.83■□□□□ 0.76
PTPRF-214ENST00000496043 STRCQ7RTU9 1775 aa19.81■□□□□ 0.76
PTPRF-214ENST00000496043 NCKAP5LQ9HCH0 1330 aa19.8■□□□□ 0.76
PTPRF-214ENST00000496043 MAST1Q9Y2H9 1570 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 185 ms