RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 ARHGAP5Q13017 1502 aa26.58■■□□□ 1.85
HDAC6-235ENST00000495515 GPATCH8Q9UKJ3 1502 aaKnown RBP26.57■■□□□ 1.84
HDAC6-235ENST00000495515 CFAP74Q9C0B2 1584 aa26.57■■□□□ 1.84
HDAC6-235ENST00000495515 CFDP1Q9UEE9 299 aaPredicted RBP26.56■■□□□ 1.84
HDAC6-235ENST00000495515 AKNAQ7Z591 1439 aa26.55■■□□□ 1.84
HDAC6-235ENST00000495515 PREX2Q70Z35 1606 aa26.54■■□□□ 1.84
HDAC6-235ENST00000495515 CDC42BPAQ5VT25 1732 aa26.49■■□□□ 1.83
HDAC6-235ENST00000495515 ZNF777Q9ULD5 760 aaPredicted RBP26.49■■□□□ 1.83
HDAC6-235ENST00000495515 ADGRL1O94910 1474 aa26.48■■□□□ 1.83
HDAC6-235ENST00000495515 ITSN2Q9NZM3 1697 aa26.47■■□□□ 1.83
HDAC6-235ENST00000495515 CDC42BPBQ9Y5S2 1711 aa26.46■■□□□ 1.83
HDAC6-235ENST00000495515 COL17A1Q9UMD9 1497 aaPredicted RBP26.45■■□□□ 1.82
HDAC6-235ENST00000495515 MYOM3Q5VTT5 1437 aa26.45■■□□□ 1.82
HDAC6-235ENST00000495515 SCAPERQ9BY12 1400 aa26.45■■□□□ 1.82
HDAC6-235ENST00000495515 DENND4BO75064 1496 aaPredicted RBP26.44■■□□□ 1.82
HDAC6-235ENST00000495515 PLEKHH2Q8IVE3 1493 aa26.42■■□□□ 1.82
HDAC6-235ENST00000495515 MIA2Q96PC5 1412 aa26.41■■□□□ 1.82
HDAC6-235ENST00000495515 RAPGEF3O95398 923 aa26.4■■□□□ 1.82
HDAC6-235ENST00000495515 PPARGC1BQ86YN6 1023 aaKnown RBP26.39■■□□□ 1.82
HDAC6-235ENST00000495515 KIAA1107Q9UPP5 1409 aa26.38■■□□□ 1.81
HDAC6-235ENST00000495515 ABCC1P33527 1531 aa26.36■■□□□ 1.81
HDAC6-235ENST00000495515 POGZQ7Z3K3 1410 aa26.36■■□□□ 1.81
HDAC6-235ENST00000495515 SAMD9LQ8IVG5 1584 aa26.36■■□□□ 1.81
HDAC6-235ENST00000495515 ZNF644Q9H582 1327 aaPredicted RBP26.35■■□□□ 1.81
HDAC6-235ENST00000495515 ZNF518AQ6AHZ1 1483 aa26.33■■□□□ 1.81
HDAC6-235ENST00000495515 HNRNPMP52272 730 aaKnown RBP eCLIP26.32■■□□□ 1.8
HDAC6-235ENST00000495515 FGD6Q6ZV73 1430 aa26.31■■□□□ 1.8
HDAC6-235ENST00000495515 CAMSAP2Q08AD1 1489 aa26.31■■□□□ 1.8
HDAC6-235ENST00000495515 RSPH4AQ5TD94 716 aa26.31■■□□□ 1.8
HDAC6-235ENST00000495515 SYCP2Q9BX26 1530 aa26.3■■□□□ 1.8
HDAC6-235ENST00000495515 AFAP1Q8N556 730 aa26.3■■□□□ 1.8
HDAC6-235ENST00000495515 ARHGEF12Q9NZN5 1544 aa26.29■■□□□ 1.8
HDAC6-235ENST00000495515 TRAPPC8Q9Y2L5 1435 aa26.28■■□□□ 1.8
HDAC6-235ENST00000495515 FRMPD1Q5SYB0 1578 aa26.27■■□□□ 1.8
HDAC6-235ENST00000495515 RICTORQ6R327 1708 aa26.27■■□□□ 1.8
HDAC6-235ENST00000495515 MAGI2Q86UL8 1455 aa26.26■■□□□ 1.79
HDAC6-235ENST00000495515 MYT1LQ9UL68 1186 aa26.26■■□□□ 1.79
HDAC6-235ENST00000495515 ZMYM4Q5VZL5 1548 aa26.24■■□□□ 1.79
HDAC6-235ENST00000495515 MBD5Q9P267 1494 aa26.24■■□□□ 1.79
HDAC6-235ENST00000495515 PTPN23Q9H3S7 1636 aa26.23■■□□□ 1.79
HDAC6-235ENST00000495515 KDM5CP41229 1560 aa26.22■■□□□ 1.79
HDAC6-235ENST00000495515 TCOF1Q13428 1488 aaKnown RBP26.22■■□□□ 1.79
HDAC6-235ENST00000495515 SPAG9O60271 1321 aaKnown RBP26.21■■□□□ 1.79
HDAC6-235ENST00000495515 CCDC141Q6ZP82 1450 aa26.21■■□□□ 1.79
HDAC6-235ENST00000495515 KDM4FA0A1W2PPD8 638 aa26.2■■□□□ 1.78
HDAC6-235ENST00000495515 TSPY4P0CV99 314 aa26.2■■□□□ 1.78
HDAC6-235ENST00000495515 TSPY10P0CW01 314 aa26.2■■□□□ 1.78
HDAC6-235ENST00000495515 FAM50AQ14320 339 aaKnown RBP26.2■■□□□ 1.78
HDAC6-235ENST00000495515 MLH3Q9UHC1 1453 aa26.19■■□□□ 1.78
HDAC6-235ENST00000495515 ARHGEF5Q12774 1597 aa26.19■■□□□ 1.78
HDAC6-235ENST00000495515 ZFYVE16Q7Z3T8 1539 aa26.17■■□□□ 1.78
HDAC6-235ENST00000495515 HECW2Q9P2P5 1572 aa26.16■■□□□ 1.78
HDAC6-235ENST00000495515 ARHGEF40Q8TER5 1519 aa26.13■■□□□ 1.77
HDAC6-235ENST00000495515 RTEL1-TNFRSF6BF6WH68 1400 aa26.13■■□□□ 1.77
HDAC6-235ENST00000495515 YEATS2Q9ULM3 1422 aa26.13■■□□□ 1.77
HDAC6-235ENST00000495515 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.12■■□□□ 1.77
HDAC6-235ENST00000495515 RRBP1Q9P2E9 1410 aaKnown RBP26.1■■□□□ 1.77
HDAC6-235ENST00000495515 ATP7AQ04656 1500 aa26.09■■□□□ 1.77
HDAC6-235ENST00000495515 ATP10AO60312 1499 aa26.09■■□□□ 1.77
HDAC6-235ENST00000495515 ABCC5O15440 1437 aa26.08■■□□□ 1.77
HDAC6-235ENST00000495515 DAPK1P53355 1430 aa26.08■■□□□ 1.77
HDAC6-235ENST00000495515 C9orf84Q5VXU9 1444 aa26.06■■□□□ 1.76
HDAC6-235ENST00000495515 INO80Q9ULG1 1556 aaPredicted RBP26.06■■□□□ 1.76
HDAC6-235ENST00000495515 DNMT1P26358 1616 aaKnown RBP26.06■■□□□ 1.76
HDAC6-235ENST00000495515 SHANK2Q9UPX8 1470 aa26.05■■□□□ 1.76
HDAC6-235ENST00000495515 KIDINS220Q9ULH0 1771 aa26.04■■□□□ 1.76
HDAC6-235ENST00000495515 ARID4BQ4LE39 1312 aaPredicted RBP26.03■■□□□ 1.76
HDAC6-235ENST00000495515 DIP2CQ9Y2E4 1556 aa26.03■■□□□ 1.76
HDAC6-235ENST00000495515 MAST1Q9Y2H9 1570 aa26.03■■□□□ 1.76
HDAC6-235ENST00000495515 ABCA6Q8N139 1617 aa26■■□□□ 1.75
HDAC6-235ENST00000495515 REREQ9P2R6 1566 aa25.98■■□□□ 1.75
HDAC6-235ENST00000495515 ANKRD30AQ9BXX3 1397 aa25.97■■□□□ 1.75
HDAC6-235ENST00000495515 ITGAEP38570 1179 aa25.97■■□□□ 1.75
HDAC6-235ENST00000495515 CHIC2Q9UKJ5 165 aa25.97■■□□□ 1.75
HDAC6-235ENST00000495515 A2MP01023 1474 aa25.97■■□□□ 1.75
HDAC6-235ENST00000495515 CROCC2H7BZ55 1655 aa25.96■■□□□ 1.75
HDAC6-235ENST00000495515 DHX29Q7Z478 1369 aaKnown RBP25.95■■□□□ 1.74
HDAC6-235ENST00000495515 PLXNC1O60486 1568 aa25.92■■□□□ 1.74
HDAC6-235ENST00000495515 ADGBQ8N7X0 1667 aa25.92■■□□□ 1.74
HDAC6-235ENST00000495515 KIF15Q9NS87 1388 aa25.92■■□□□ 1.74
HDAC6-235ENST00000495515 RRP7BPQ9NSQ0 103 aa25.91■■□□□ 1.74
HDAC6-235ENST00000495515 AGLP35573 1532 aa25.91■■□□□ 1.74
HDAC6-235ENST00000495515 ADGRL2O95490 1459 aa25.91■■□□□ 1.74
HDAC6-235ENST00000495515 NCOA1Q15788 1441 aa25.9■■□□□ 1.74
HDAC6-235ENST00000495515 PTPRKQ15262 1439 aa25.89■■□□□ 1.74
HDAC6-235ENST00000495515 ROCK1Q13464 1354 aa25.89■■□□□ 1.74
HDAC6-235ENST00000495515 DUOX2Q9NRD8 1548 aa25.87■■□□□ 1.73
HDAC6-235ENST00000495515 MLECQ14165 292 aa25.86■■□□□ 1.73
HDAC6-235ENST00000495515 KIF3BO15066 747 aa25.83■■□□□ 1.73
HDAC6-235ENST00000495515 ERBINQ96RT1 1412 aa25.81■■□□□ 1.72
HDAC6-235ENST00000495515 SIGLEC1Q9BZZ2 1709 aa25.8■■□□□ 1.72
HDAC6-235ENST00000495515 BCORL1Q5H9F3 1711 aa25.8■■□□□ 1.72
HDAC6-235ENST00000495515 GGT6Q6P531 493 aa25.79■■□□□ 1.72
HDAC6-235ENST00000495515 ESF1Q9H501 851 aaKnown RBP25.79■■□□□ 1.72
HDAC6-235ENST00000495515 ADAMTSL3P82987 1691 aa25.79■■□□□ 1.72
HDAC6-235ENST00000495515 PPP6R1Q9UPN7 881 aa25.78■■□□□ 1.72
HDAC6-235ENST00000495515 ANKRD50Q9ULJ7 1429 aa25.77■■□□□ 1.72
HDAC6-235ENST00000495515 EIF2AK4Q9P2K8 1649 aaKnown RBP25.75■■□□□ 1.71
HDAC6-235ENST00000495515 MADDQ8WXG6 1647 aa25.71■■□□□ 1.71
HDAC6-235ENST00000495515 CNTLNQ9NXG0 1405 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms