RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 NCOA2Q15596 1464 aa30.44■■■□□ 2.46
HDAC4-212ENST00000495497 ARAP3Q8WWN8 1544 aa30.43■■■□□ 2.46
HDAC4-212ENST00000495497 RAPGEF3O95398 923 aa30.42■■■□□ 2.46
HDAC4-212ENST00000495497 CDC42BPBQ9Y5S2 1711 aa30.42■■■□□ 2.46
HDAC4-212ENST00000495497 PREX2Q70Z35 1606 aa30.4■■■□□ 2.46
HDAC4-212ENST00000495497 CDC42BPAQ5VT25 1732 aa30.4■■■□□ 2.46
HDAC4-212ENST00000495497 CFAP74Q9C0B2 1584 aa30.4■■■□□ 2.46
HDAC4-212ENST00000495497 SUPT6HQ7KZ85 1726 aaKnown RBP30.39■■■□□ 2.46
HDAC4-212ENST00000495497 ZNF777Q9ULD5 760 aaPredicted RBP30.39■■■□□ 2.46
HDAC4-212ENST00000495497 CFDP1Q9UEE9 299 aaPredicted RBP30.37■■■□□ 2.45
HDAC4-212ENST00000495497 ADGRL1O94910 1474 aa30.37■■■□□ 2.45
HDAC4-212ENST00000495497 SCAPERQ9BY12 1400 aa30.36■■■□□ 2.45
HDAC4-212ENST00000495497 DENND4BO75064 1496 aaPredicted RBP30.34■■■□□ 2.45
HDAC4-212ENST00000495497 PPARGC1BQ86YN6 1023 aaKnown RBP30.3■■■□□ 2.44
HDAC4-212ENST00000495497 FRMPD1Q5SYB0 1578 aa30.28■■■□□ 2.44
HDAC4-212ENST00000495497 ZNF644Q9H582 1327 aaPredicted RBP30.28■■■□□ 2.44
HDAC4-212ENST00000495497 SAMD9LQ8IVG5 1584 aa30.26■■■□□ 2.43
HDAC4-212ENST00000495497 ARHGEF12Q9NZN5 1544 aa30.26■■■□□ 2.43
HDAC4-212ENST00000495497 POGZQ7Z3K3 1410 aa30.24■■■□□ 2.43
HDAC4-212ENST00000495497 HNRNPMP52272 730 aaKnown RBP eCLIP30.24■■■□□ 2.43
HDAC4-212ENST00000495497 AFAP1Q8N556 730 aa30.24■■■□□ 2.43
HDAC4-212ENST00000495497 ITSN2Q9NZM3 1697 aa30.23■■■□□ 2.43
HDAC4-212ENST00000495497 ABCC1P33527 1531 aa30.23■■■□□ 2.43
HDAC4-212ENST00000495497 RICTORQ6R327 1708 aa30.22■■■□□ 2.43
HDAC4-212ENST00000495497 TRAPPC8Q9Y2L5 1435 aa30.21■■■□□ 2.43
HDAC4-212ENST00000495497 MYOM3Q5VTT5 1437 aa30.2■■■□□ 2.42
HDAC4-212ENST00000495497 SYCP2Q9BX26 1530 aa30.18■■■□□ 2.42
HDAC4-212ENST00000495497 ZNF518AQ6AHZ1 1483 aa30.15■■■□□ 2.42
HDAC4-212ENST00000495497 KIAA1107Q9UPP5 1409 aa30.14■■■□□ 2.42
HDAC4-212ENST00000495497 CAMSAP2Q08AD1 1489 aa30.13■■■□□ 2.41
HDAC4-212ENST00000495497 PLEKHH2Q8IVE3 1493 aa30.13■■■□□ 2.41
HDAC4-212ENST00000495497 ZMYM4Q5VZL5 1548 aa30.12■■■□□ 2.41
HDAC4-212ENST00000495497 YEATS2Q9ULM3 1422 aa30.11■■■□□ 2.41
HDAC4-212ENST00000495497 MYT1LQ9UL68 1186 aa30.1■■■□□ 2.41
HDAC4-212ENST00000495497 MIA2Q96PC5 1412 aa30.1■■■□□ 2.41
HDAC4-212ENST00000495497 MBD5Q9P267 1494 aa30.09■■■□□ 2.41
HDAC4-212ENST00000495497 KDM5CP41229 1560 aa30.08■■■□□ 2.41
HDAC4-212ENST00000495497 FGD6Q6ZV73 1430 aa30.05■■■□□ 2.4
HDAC4-212ENST00000495497 ZFYVE16Q7Z3T8 1539 aa30.05■■■□□ 2.4
HDAC4-212ENST00000495497 MAGI2Q86UL8 1455 aa30.05■■■□□ 2.4
HDAC4-212ENST00000495497 SPAG9O60271 1321 aaKnown RBP30.02■■■□□ 2.4
HDAC4-212ENST00000495497 ARHGEF40Q8TER5 1519 aa30.01■■■□□ 2.4
HDAC4-212ENST00000495497 MLH3Q9UHC1 1453 aa30.01■■■□□ 2.4
HDAC4-212ENST00000495497 HECW2Q9P2P5 1572 aa30■■■□□ 2.39
HDAC4-212ENST00000495497 PTPN23Q9H3S7 1636 aa30■■■□□ 2.39
HDAC4-212ENST00000495497 CCDC141Q6ZP82 1450 aa29.97■■■□□ 2.39
HDAC4-212ENST00000495497 RSPH4AQ5TD94 716 aa29.96■■■□□ 2.39
HDAC4-212ENST00000495497 TCOF1Q13428 1488 aaKnown RBP29.95■■■□□ 2.39
HDAC4-212ENST00000495497 ATP10AO60312 1499 aa29.94■■■□□ 2.38
HDAC4-212ENST00000495497 FAM50AQ14320 339 aaKnown RBP29.94■■■□□ 2.38
HDAC4-212ENST00000495497 ARHGEF5Q12774 1597 aa29.94■■■□□ 2.38
HDAC4-212ENST00000495497 ARID4BQ4LE39 1312 aaPredicted RBP29.94■■■□□ 2.38
HDAC4-212ENST00000495497 KIDINS220Q9ULH0 1771 aa29.93■■■□□ 2.38
HDAC4-212ENST00000495497 DIP2CQ9Y2E4 1556 aa29.92■■■□□ 2.38
HDAC4-212ENST00000495497 ABCA6Q8N139 1617 aa29.92■■■□□ 2.38
HDAC4-212ENST00000495497 ATP7AQ04656 1500 aa29.91■■■□□ 2.38
HDAC4-212ENST00000495497 TSPY4P0CV99 314 aa29.9■■■□□ 2.38
HDAC4-212ENST00000495497 TSPY10P0CW01 314 aa29.9■■■□□ 2.38
HDAC4-212ENST00000495497 C9orf84Q5VXU9 1444 aa29.89■■■□□ 2.38
HDAC4-212ENST00000495497 INO80Q9ULG1 1556 aaPredicted RBP29.89■■■□□ 2.38
HDAC4-212ENST00000495497 KDM4FA0A1W2PPD8 638 aa29.88■■■□□ 2.37
HDAC4-212ENST00000495497 SIGLEC1Q9BZZ2 1709 aa29.87■■■□□ 2.37
HDAC4-212ENST00000495497 RTEL1-TNFRSF6BF6WH68 1400 aa29.86■■■□□ 2.37
HDAC4-212ENST00000495497 ABCC5O15440 1437 aa29.86■■■□□ 2.37
HDAC4-212ENST00000495497 DAPK1P53355 1430 aa29.83■■■□□ 2.37
HDAC4-212ENST00000495497 MLECQ14165 292 aa29.82■■■□□ 2.36
HDAC4-212ENST00000495497 DNMT1P26358 1616 aaKnown RBP29.79■■■□□ 2.36
HDAC4-212ENST00000495497 CHIC2Q9UKJ5 165 aa29.79■■■□□ 2.36
HDAC4-212ENST00000495497 MAST1Q9Y2H9 1570 aa29.77■■■□□ 2.36
HDAC4-212ENST00000495497 A2MP01023 1474 aa29.76■■■□□ 2.35
HDAC4-212ENST00000495497 REREQ9P2R6 1566 aa29.76■■■□□ 2.35
HDAC4-212ENST00000495497 RRBP1Q9P2E9 1410 aaKnown RBP29.74■■■□□ 2.35
HDAC4-212ENST00000495497 ITGAEP38570 1179 aa29.73■■■□□ 2.35
HDAC4-212ENST00000495497 SHANK2Q9UPX8 1470 aa29.73■■■□□ 2.35
HDAC4-212ENST00000495497 CROCC2H7BZ55 1655 aa29.72■■■□□ 2.35
HDAC4-212ENST00000495497 BCORL1Q5H9F3 1711 aa29.72■■■□□ 2.35
HDAC4-212ENST00000495497 DHX29Q7Z478 1369 aaKnown RBP29.72■■■□□ 2.35
HDAC4-212ENST00000495497 PTPRKQ15262 1439 aa29.71■■■□□ 2.35
HDAC4-212ENST00000495497 RRP7BPQ9NSQ0 103 aa29.7■■■□□ 2.35
HDAC4-212ENST00000495497 AGLP35573 1532 aa29.7■■■□□ 2.34
HDAC4-212ENST00000495497 ADGBQ8N7X0 1667 aa29.69■■■□□ 2.34
HDAC4-212ENST00000495497 PLXNC1O60486 1568 aa29.69■■■□□ 2.34
HDAC4-212ENST00000495497 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.68■■■□□ 2.347e-7■■■■■ 52.8
HDAC4-212ENST00000495497 ADAMTSL3P82987 1691 aa29.66■■■□□ 2.34
HDAC4-212ENST00000495497 KIF15Q9NS87 1388 aa29.64■■■□□ 2.33
HDAC4-212ENST00000495497 MADDQ8WXG6 1647 aa29.63■■■□□ 2.33
HDAC4-212ENST00000495497 ANKRD30AQ9BXX3 1397 aa29.63■■■□□ 2.33
HDAC4-212ENST00000495497 KIF3BO15066 747 aa29.62■■■□□ 2.33
HDAC4-212ENST00000495497 GGT6Q6P531 493 aa29.62■■■□□ 2.33
HDAC4-212ENST00000495497 AEBP2Q6ZN18 517 aaPredicted RBP29.62■■■□□ 2.33
HDAC4-212ENST00000495497 NCOA1Q15788 1441 aa29.62■■■□□ 2.33
HDAC4-212ENST00000495497 ADGRL2O95490 1459 aa29.59■■■□□ 2.33
HDAC4-212ENST00000495497 DUOX2Q9NRD8 1548 aa29.57■■■□□ 2.32
HDAC4-212ENST00000495497 PLPPR3Q6T4P5 718 aa29.55■■■□□ 2.32
HDAC4-212ENST00000495497 RIMS1Q86UR5 1692 aaKnown RBP29.53■■■□□ 2.32
HDAC4-212ENST00000495497 PTPRMP28827 1452 aa29.53■■■□□ 2.32
HDAC4-212ENST00000495497 ESF1Q9H501 851 aaKnown RBP29.51■■■□□ 2.31
HDAC4-212ENST00000495497 FER1L4A9Z1Z3 1794 aa29.51■■■□□ 2.31
HDAC4-212ENST00000495497 ROCK1Q13464 1354 aa29.5■■■□□ 2.31
HDAC4-212ENST00000495497 ERBINQ96RT1 1412 aa29.49■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms