RNA–Protein interactions for RNA: ENST00000494395.1

ITGB1-217, Transcript of integrin subunit beta 1, humanhuman

TSL 3

Gene ITGB1, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-217ENST00000494395 KDM6BO15054 1643 aa14.18□□□□□ -0.14
ITGB1-217ENST00000494395 CD109Q6YHK3 1445 aa14.17□□□□□ -0.14
ITGB1-217ENST00000494395 TEX14Q8IWB6 1497 aa14.17□□□□□ -0.14
ITGB1-217ENST00000494395 APLP2Q06481 763 aa14.16□□□□□ -0.14
ITGB1-217ENST00000494395 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.15□□□□□ -0.14
ITGB1-217ENST00000494395 CCDC18Q5T9S5 1454 aa14.15□□□□□ -0.14
ITGB1-217ENST00000494395 TTC37Q6PGP7 1564 aa14.14□□□□□ -0.15
ITGB1-217ENST00000494395 COL17A1Q9UMD9 1497 aaPredicted RBP14.14□□□□□ -0.15
ITGB1-217ENST00000494395 PLEKHD1A6NEE1 506 aa14.14□□□□□ -0.15
ITGB1-217ENST00000494395 FKBP8Q14318 412 aa14.12□□□□□ -0.15
ITGB1-217ENST00000494395 TROQ12816 1431 aaPredicted RBP14.12□□□□□ -0.15
ITGB1-217ENST00000494395 KIF14Q15058 1648 aa14.12□□□□□ -0.15
ITGB1-217ENST00000494395 POTEDQ86YR6 584 aa14.11□□□□□ -0.15
ITGB1-217ENST00000494395 ATP1B4Q9UN42 357 aaPredicted RBP14.1□□□□□ -0.15
ITGB1-217ENST00000494395 NEO1Q92859 1461 aa14.08□□□□□ -0.16
ITGB1-217ENST00000494395 ZNF219Q9P2Y4 722 aaPredicted RBP14.08□□□□□ -0.16
ITGB1-217ENST00000494395 ARAP3Q8WWN8 1544 aa14.08□□□□□ -0.16
ITGB1-217ENST00000494395 CDK11AQ9UQ88 783 aaPredicted RBP14.07□□□□□ -0.16
ITGB1-217ENST00000494395 MYO5CQ9NQX4 1742 aa14.07□□□□□ -0.16
ITGB1-217ENST00000494395 VPS8Q8N3P4 1428 aa14.07□□□□□ -0.16
ITGB1-217ENST00000494395 CFAP74Q9C0B2 1584 aa14.05□□□□□ -0.16
ITGB1-217ENST00000494395 RNF39Q9H2S5 420 aa14.05□□□□□ -0.16
ITGB1-217ENST00000494395 PHLDB1Q86UU1 1377 aa14.05□□□□□ -0.16
ITGB1-217ENST00000494395 PLCH2O75038 1416 aa14.05□□□□□ -0.16
ITGB1-217ENST00000494395 FRMPD1Q5SYB0 1578 aa14.04□□□□□ -0.16
ITGB1-217ENST00000494395 FANCAO15360 1455 aa14.03□□□□□ -0.16
ITGB1-217ENST00000494395 CDC42BPBQ9Y5S2 1711 aa14.03□□□□□ -0.16
ITGB1-217ENST00000494395 PREX2Q70Z35 1606 aa14.02□□□□□ -0.16
ITGB1-217ENST00000494395 CDC42BPAQ5VT25 1732 aa14.01□□□□□ -0.17
ITGB1-217ENST00000494395 RICTORQ6R327 1708 aa14.01□□□□□ -0.17
ITGB1-217ENST00000494395 TIAM1Q13009 1591 aa14□□□□□ -0.17
ITGB1-217ENST00000494395 EHBP1L1Q8N3D4 1523 aa14□□□□□ -0.17
ITGB1-217ENST00000494395 AKNAQ7Z591 1439 aa13.99□□□□□ -0.17
ITGB1-217ENST00000494395 MAP3K1Q13233 1512 aa13.98□□□□□ -0.17
ITGB1-217ENST00000494395 MTUS2Q5JR59 1369 aa13.96□□□□□ -0.17
ITGB1-217ENST00000494395 SPINK5Q9NQ38 1064 aaPredicted RBP13.96□□□□□ -0.17
ITGB1-217ENST00000494395 ARHGAP5Q13017 1502 aa13.95□□□□□ -0.18
ITGB1-217ENST00000494395 ZMYM4Q5VZL5 1548 aa13.95□□□□□ -0.18
ITGB1-217ENST00000494395 DENND4BO75064 1496 aaPredicted RBP13.95□□□□□ -0.18
ITGB1-217ENST00000494395 GPATCH8Q9UKJ3 1502 aaKnown RBP13.95□□□□□ -0.18
ITGB1-217ENST00000494395 ADGRL1O94910 1474 aa13.94□□□□□ -0.18
ITGB1-217ENST00000494395 RAPGEF3O95398 923 aa13.93□□□□□ -0.18
ITGB1-217ENST00000494395 EFCAB2Q5VUJ9 269 aa13.93□□□□□ -0.18
ITGB1-217ENST00000494395 ABCC1P33527 1531 aa13.93□□□□□ -0.18
ITGB1-217ENST00000494395 LRRC9Q6ZRR7 1453 aa13.93□□□□□ -0.18
ITGB1-217ENST00000494395 SUPT6HQ7KZ85 1726 aaKnown RBP13.93□□□□□ -0.18
ITGB1-217ENST00000494395 POGZQ7Z3K3 1410 aa13.92□□□□□ -0.18
ITGB1-217ENST00000494395 SCAPERQ9BY12 1400 aa13.92□□□□□ -0.18
ITGB1-217ENST00000494395 SAMD9LQ8IVG5 1584 aa13.92□□□□□ -0.18
ITGB1-217ENST00000494395 ITSN2Q9NZM3 1697 aa13.91□□□□□ -0.18
ITGB1-217ENST00000494395 ARHGEF40Q8TER5 1519 aa13.91□□□□□ -0.18
ITGB1-217ENST00000494395 KDM5CP41229 1560 aa13.91□□□□□ -0.18
ITGB1-217ENST00000494395 C1QBPQ07021 282 aaKnown RBP13.9□□□□□ -0.18
ITGB1-217ENST00000494395 ARHGEF12Q9NZN5 1544 aa13.9□□□□□ -0.19
ITGB1-217ENST00000494395 NCOA2Q15596 1464 aa13.89□□□□□ -0.19
ITGB1-217ENST00000494395 CCNB3Q8WWL7 1395 aa13.88□□□□□ -0.19
ITGB1-217ENST00000494395 ZNF518AQ6AHZ1 1483 aa13.87□□□□□ -0.19
ITGB1-217ENST00000494395 MAGI2Q86UL8 1455 aa13.87□□□□□ -0.19
ITGB1-217ENST00000494395 CAPN15O75808 1086 aa13.87□□□□□ -0.19
ITGB1-217ENST00000494395 KANK4Q5T7N3 995 aaPredicted RBP13.87□□□□□ -0.19
ITGB1-217ENST00000494395 TRAPPC8Q9Y2L5 1435 aa13.86□□□□□ -0.19
ITGB1-217ENST00000494395 SIGLEC1Q9BZZ2 1709 aa13.86□□□□□ -0.19
ITGB1-217ENST00000494395 ZFYVE16Q7Z3T8 1539 aa13.85□□□□□ -0.19
ITGB1-217ENST00000494395 SYCP2Q9BX26 1530 aa13.85□□□□□ -0.19
ITGB1-217ENST00000494395 YEATS2Q9ULM3 1422 aa13.85□□□□□ -0.19
ITGB1-217ENST00000494395 HECW2Q9P2P5 1572 aa13.84□□□□□ -0.19
ITGB1-217ENST00000494395 KDM4FA0A1W2PPD8 638 aa13.84□□□□□ -0.19
ITGB1-217ENST00000494395 KIAA1107Q9UPP5 1409 aa13.83□□□□□ -0.2
ITGB1-217ENST00000494395 PLEKHH2Q8IVE3 1493 aa13.82□□□□□ -0.2
ITGB1-217ENST00000494395 MLH3Q9UHC1 1453 aa13.82□□□□□ -0.2
ITGB1-217ENST00000494395 KIDINS220Q9ULH0 1771 aa13.82□□□□□ -0.2
ITGB1-217ENST00000494395 CFDP1Q9UEE9 299 aaPredicted RBP13.82□□□□□ -0.2
ITGB1-217ENST00000494395 DIP2CQ9Y2E4 1556 aa13.81□□□□□ -0.2
ITGB1-217ENST00000494395 AFAP1Q8N556 730 aa13.81□□□□□ -0.2
ITGB1-217ENST00000494395 ABCA6Q8N139 1617 aa13.81□□□□□ -0.2
ITGB1-217ENST00000494395 MBD5Q9P267 1494 aa13.8□□□□□ -0.2
ITGB1-217ENST00000494395 BCORL1Q5H9F3 1711 aa13.8□□□□□ -0.2
ITGB1-217ENST00000494395 CAMSAP2Q08AD1 1489 aa13.8□□□□□ -0.2
ITGB1-217ENST00000494395 REREQ9P2R6 1566 aa13.79□□□□□ -0.2
ITGB1-217ENST00000494395 INO80Q9ULG1 1556 aaPredicted RBP13.79□□□□□ -0.2
ITGB1-217ENST00000494395 ADAMTSL3P82987 1691 aa13.79□□□□□ -0.2
ITGB1-217ENST00000494395 POLA2Q14181 598 aa13.79□□□□□ -0.2
ITGB1-217ENST00000494395 ZNF644Q9H582 1327 aaPredicted RBP13.79□□□□□ -0.2
ITGB1-217ENST00000494395 ZNF777Q9ULD5 760 aaPredicted RBP13.78□□□□□ -0.2
ITGB1-217ENST00000494395 MYOM3Q5VTT5 1437 aa13.78□□□□□ -0.2
ITGB1-217ENST00000494395 ATP10AO60312 1499 aa13.78□□□□□ -0.2
ITGB1-217ENST00000494395 MKRN4PQ13434 485 aaPredicted RBP13.77□□□□□ -0.21
ITGB1-217ENST00000494395 C9orf84Q5VXU9 1444 aa13.77□□□□□ -0.21
ITGB1-217ENST00000494395 ARHGEF5Q12774 1597 aa13.76□□□□□ -0.21
ITGB1-217ENST00000494395 ATP7AQ04656 1500 aa13.76□□□□□ -0.21
ITGB1-217ENST00000494395 MIA2Q96PC5 1412 aa13.76□□□□□ -0.21
ITGB1-217ENST00000494395 HNRNPMP52272 730 aaKnown RBP eCLIP13.76□□□□□ -0.21
ITGB1-217ENST00000494395 AGLP35573 1532 aa13.73□□□□□ -0.21
ITGB1-217ENST00000494395 CCDC141Q6ZP82 1450 aa13.73□□□□□ -0.21
ITGB1-217ENST00000494395 MADDQ8WXG6 1647 aa13.72□□□□□ -0.21
ITGB1-217ENST00000494395 PLXNC1O60486 1568 aa13.72□□□□□ -0.21
ITGB1-217ENST00000494395 PTPN23Q9H3S7 1636 aa13.72□□□□□ -0.21
ITGB1-217ENST00000494395 SPAG9O60271 1321 aaKnown RBP13.71□□□□□ -0.21
ITGB1-217ENST00000494395 TCOF1Q13428 1488 aaKnown RBP13.71□□□□□ -0.21
ITGB1-217ENST00000494395 ADGBQ8N7X0 1667 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms