RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 SOX12O15370 315 aa10.48□□□□□ -0.73
PTCD3-219ENST00000494323 PAXIP1Q6ZW49 1069 aaPredicted RBP10.48□□□□□ -0.73
PTCD3-219ENST00000494323 DPY19L2Q6NUT2 758 aa10.47□□□□□ -0.73
PTCD3-219ENST00000494323 SPRYD3Q8NCJ5 442 aa10.47□□□□□ -0.73
PTCD3-219ENST00000494323 HAP1P54257 671 aaPredicted RBP10.46□□□□□ -0.73
PTCD3-219ENST00000494323 DCAF1Q9Y4B6 1507 aa10.46□□□□□ -0.74
PTCD3-219ENST00000494323 CFAP44Q96MT7 982 aa10.45□□□□□ -0.74
PTCD3-219ENST00000494323 BOLA1Q9Y3E2 137 aa10.44□□□□□ -0.74
PTCD3-219ENST00000494323 PHF8Q9UPP1 1060 aa10.43□□□□□ -0.74
PTCD3-219ENST00000494323 EIF4G1Q04637 1599 aaKnown RBP10.42□□□□□ -0.74
PTCD3-219ENST00000494323 SHROOM4Q9ULL8 1493 aa10.41□□□□□ -0.74
PTCD3-219ENST00000494323 NLRP6P59044 892 aa10.4□□□□□ -0.74
PTCD3-219ENST00000494323 FAM163AQ96GL9 167 aaPredicted RBP10.39□□□□□ -0.75
PTCD3-219ENST00000494323 MS4A4AQ96JQ5 239 aa10.38□□□□□ -0.75
PTCD3-219ENST00000494323 NKX1-1Q15270 411 aaPredicted RBP10.37□□□□□ -0.75
PTCD3-219ENST00000494323 MFRPQ9BY79 579 aa10.36□□□□□ -0.75
PTCD3-219ENST00000494323 RYDENQ9NUL5 291 aaKnown RBP10.36□□□□□ -0.75
PTCD3-219ENST00000494323 MICALL2Q8IY33 904 aa10.35□□□□□ -0.75
PTCD3-219ENST00000494323 VSIG10Q8N0Z9 540 aa10.35□□□□□ -0.75
PTCD3-219ENST00000494323 FBXO22Q8NEZ5 403 aa10.35□□□□□ -0.75
PTCD3-219ENST00000494323 SNPHO15079 494 aa10.34□□□□□ -0.75
PTCD3-219ENST00000494323 TMEM121BQ9BXQ6 578 aaPredicted RBP10.34□□□□□ -0.75
PTCD3-219ENST00000494323 GTPBP6O43824 516 aaPredicted RBP10.31□□□□□ -0.76
PTCD3-219ENST00000494323 ST18O60284 1047 aa10.27□□□□□ -0.77
PTCD3-219ENST00000494323 TSHZ2Q9NRE2 1034 aa10.27□□□□□ -0.77
PTCD3-219ENST00000494323 TMEM92Q6UXU6 159 aa10.21□□□□□ -0.77
PTCD3-219ENST00000494323 KDM2AQ9Y2K7 1162 aa10.2□□□□□ -0.78
PTCD3-219ENST00000494323 PPP1R37O75864 691 aa10.18□□□□□ -0.78
PTCD3-219ENST00000494323 DOK7Q18PE1 504 aa10.18□□□□□ -0.78
PTCD3-219ENST00000494323 CDAN1Q8IWY9 1227 aa10.17□□□□□ -0.78
PTCD3-219ENST00000494323 ZNF710Q8N1W2 664 aa10.17□□□□□ -0.78
PTCD3-219ENST00000494323 HOXB3P14651 431 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-219ENST00000494323 RIMBP2O15034 1052 aa10.15□□□□□ -0.78
PTCD3-219ENST00000494323 MARVELD3Q96A59 401 aa10.14□□□□□ -0.79
PTCD3-219ENST00000494323 EMP3P54852 163 aa10.12□□□□□ -0.79
PTCD3-219ENST00000494323 TMC2Q8TDI7 906 aa10.12□□□□□ -0.79
PTCD3-219ENST00000494323 C2orf72A6NCS6 295 aa10.11□□□□□ -0.79
PTCD3-219ENST00000494323 KIF3CO14782 793 aa10.1□□□□□ -0.79
PTCD3-219ENST00000494323 HOXB1P14653 301 aaPredicted RBP10.08□□□□□ -0.8
PTCD3-219ENST00000494323 BCANQ96GW7 911 aa10.08□□□□□ -0.8
PTCD3-219ENST00000494323 ZSWIM6Q9HCJ5 1215 aa10.07□□□□□ -0.8
PTCD3-219ENST00000494323 NCAPD3P42695 1498 aa10.06□□□□□ -0.8
PTCD3-219ENST00000494323 ERCC6Q03468 1493 aa10.06□□□□□ -0.8
PTCD3-219ENST00000494323 FAM205CA6NFA0 338 aa10.04□□□□□ -0.8
PTCD3-219ENST00000494323 ATAD2BQ9ULI0 1458 aa10.03□□□□□ -0.8
PTCD3-219ENST00000494323 HS3ST6Q96QI5 342 aa10.02□□□□□ -0.81
PTCD3-219ENST00000494323 GPR153Q6NV75 609 aa10.01□□□□□ -0.81
PTCD3-219ENST00000494323 CUX2O14529 1486 aa10.01□□□□□ -0.81
PTCD3-219ENST00000494323 CADPS2Q86UW7 1296 aa10□□□□□ -0.81
PTCD3-219ENST00000494323 GPHNQ9NQX3 736 aaPredicted RBP10□□□□□ -0.81
PTCD3-219ENST00000494323 ERBB3P21860 1342 aa10□□□□□ -0.81
PTCD3-219ENST00000494323 NESP48681 1621 aa10□□□□□ -0.81
PTCD3-219ENST00000494323 ARSIQ5FYB1 569 aa9.99□□□□□ -0.81
PTCD3-219ENST00000494323 FOXK1P85037 733 aa9.98□□□□□ -0.81
PTCD3-219ENST00000494323 MMRN1Q13201 1228 aa9.98□□□□□ -0.81
PTCD3-219ENST00000494323 WDR70Q9NW82 654 aa9.98□□□□□ -0.81
PTCD3-219ENST00000494323 SLC34A2O95436 690 aa9.97□□□□□ -0.81
PTCD3-219ENST00000494323 POTEB3A0JP26 581 aa9.96□□□□□ -0.82
PTCD3-219ENST00000494323 POTEBQ6S5H4 581 aa9.96□□□□□ -0.82
PTCD3-219ENST00000494323 SPNS2Q8IVW8 549 aa9.96□□□□□ -0.82
PTCD3-219ENST00000494323 PLPP6Q8IY26 295 aa9.96□□□□□ -0.82
PTCD3-219ENST00000494323 SMARCA4P51532 1647 aa9.96□□□□□ -0.82
PTCD3-219ENST00000494323 DSG2Q14126 1118 aa9.95□□□□□ -0.82
PTCD3-219ENST00000494323 KHSRPQ92945 711 aaKnown RBP eCLIP9.95□□□□□ -0.822e-8■□□□□ 9.8
PTCD3-219ENST00000494323 SMARCA2P51531 1590 aa9.95□□□□□ -0.82
PTCD3-219ENST00000494323 VARS2Q5ST30 1063 aaKnown RBP9.94□□□□□ -0.82
PTCD3-219ENST00000494323 P3H3Q8IVL6 736 aa9.94□□□□□ -0.82
PTCD3-219ENST00000494323 CRISPLD2Q9H0B8 497 aa9.94□□□□□ -0.82
PTCD3-219ENST00000494323 PCDHGA4Q9Y5G9 962 aa9.94□□□□□ -0.82
PTCD3-219ENST00000494323 BAZ1BQ9UIG0 1483 aaKnown RBP9.92□□□□□ -0.82
PTCD3-219ENST00000494323 NUDT7P0C024 238 aa9.92□□□□□ -0.82
PTCD3-219ENST00000494323 PDE4AP27815 886 aa9.92□□□□□ -0.82
PTCD3-219ENST00000494323 NBR1Q14596 966 aa9.92□□□□□ -0.82
PTCD3-219ENST00000494323 HMGXB3Q12766 1538 aa9.92□□□□□ -0.82
PTCD3-219ENST00000494323 PRKCSHP14314 528 aaPredicted RBP9.91□□□□□ -0.82
PTCD3-219ENST00000494323 NCKAP5LQ9HCH0 1330 aa9.9□□□□□ -0.82
PTCD3-219ENST00000494323 ZNF316A6NFI3 1004 aaPredicted RBP9.9□□□□□ -0.82
PTCD3-219ENST00000494323 PPP1R15BQ5SWA1 713 aa9.9□□□□□ -0.82
PTCD3-219ENST00000494323 PTCD2Q8WV60 388 aaKnown RBP9.89□□□□□ -0.83
PTCD3-219ENST00000494323 BAZ1AQ9NRL2 1556 aaPredicted RBP9.88□□□□□ -0.83
PTCD3-219ENST00000494323 TBC1D12O60347 775 aa9.87□□□□□ -0.83
PTCD3-219ENST00000494323 LARP6Q9BRS8 491 aaKnown RBP9.87□□□□□ -0.83
PTCD3-219ENST00000494323 KRTAP3-3Q9BYR6 98 aa9.87□□□□□ -0.83
PTCD3-219ENST00000494323 KRTAP3-2Q9BYR7 98 aa9.87□□□□□ -0.83
PTCD3-219ENST00000494323 MROH2BQ7Z745 1585 aa9.86□□□□□ -0.83
PTCD3-219ENST00000494323 ZNF687Q8N1G0 1237 aa9.86□□□□□ -0.83
PTCD3-219ENST00000494323 DDX27Q96GQ7 796 aaKnown RBP9.86□□□□□ -0.83
PTCD3-219ENST00000494323 LHX6Q9UPM6 363 aa9.85□□□□□ -0.83
PTCD3-219ENST00000494323 MFSD10Q14728 455 aa9.84□□□□□ -0.83
PTCD3-219ENST00000494323 E2F4Q16254 413 aa9.83□□□□□ -0.84
PTCD3-219ENST00000494323 KCNV2Q8TDN2 545 aa9.83□□□□□ -0.84
PTCD3-219ENST00000494323 UPF1Q92900 1129 aaKnown RBP eCLIP9.83□□□□□ -0.84
PTCD3-219ENST00000494323 PEG3Q9GZU2 1588 aa9.82□□□□□ -0.84
PTCD3-219ENST00000494323 PDS5BQ9NTI5 1447 aa9.82□□□□□ -0.84
PTCD3-219ENST00000494323 THOC2Q8NI27 1593 aaKnown RBP9.81□□□□□ -0.84
PTCD3-219ENST00000494323 LAMC3Q9Y6N6 1575 aa9.81□□□□□ -0.84
PTCD3-219ENST00000494323 OXER1Q8TDS5 423 aa9.81□□□□□ -0.84
PTCD3-219ENST00000494323 KIF21AQ7Z4S6 1674 aa9.8□□□□□ -0.84
PTCD3-219ENST00000494323 PSDA5PKW4 1024 aaPredicted RBP9.8□□□□□ -0.84
PTCD3-219ENST00000494323 CADPSQ9ULU8 1353 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms