RNA–Protein interactions for RNA: ENST00000494069.1

LRCH3-219, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 783 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-219ENST00000494069 PCF11O94913 1555 aaKnown RBP13.88□□□□□ -0.19
LRCH3-219ENST00000494069 KIF14Q15058 1648 aa13.87□□□□□ -0.19
LRCH3-219ENST00000494069 DMRT2Q9Y5R5 561 aa13.87□□□□□ -0.19
LRCH3-219ENST00000494069 RICTORQ6R327 1708 aa13.84□□□□□ -0.19
LRCH3-219ENST00000494069 SCAPERQ9BY12 1400 aa13.84□□□□□ -0.19
LRCH3-219ENST00000494069 EFCAB2Q5VUJ9 269 aa13.83□□□□□ -0.2
LRCH3-219ENST00000494069 CFAP74Q9C0B2 1584 aa13.83□□□□□ -0.2
LRCH3-219ENST00000494069 ARID4BQ4LE39 1312 aaPredicted RBP13.82□□□□□ -0.2
LRCH3-219ENST00000494069 YEATS2Q9ULM3 1422 aa13.81□□□□□ -0.2
LRCH3-219ENST00000494069 LOC105371045A0A1W2PR82 267 aa13.81□□□□□ -0.2
LRCH3-219ENST00000494069 CCDC18Q5T9S5 1454 aa13.8□□□□□ -0.2
LRCH3-219ENST00000494069 FYCO1Q9BQS8 1478 aa13.8□□□□□ -0.2
LRCH3-219ENST00000494069 MYO5CQ9NQX4 1742 aa13.8□□□□□ -0.2
LRCH3-219ENST00000494069 POGZQ7Z3K3 1410 aa13.8□□□□□ -0.2
LRCH3-219ENST00000494069 ARHGAP5Q13017 1502 aa13.79□□□□□ -0.2
LRCH3-219ENST00000494069 ARHGEF40Q8TER5 1519 aa13.79□□□□□ -0.2
LRCH3-219ENST00000494069 AFAP1Q8N556 730 aa13.78□□□□□ -0.2
LRCH3-219ENST00000494069 ZMYM4Q5VZL5 1548 aa13.78□□□□□ -0.2
LRCH3-219ENST00000494069 ADAMTSL3P82987 1691 aa13.78□□□□□ -0.2
LRCH3-219ENST00000494069 CEP162Q5TB80 1403 aa13.77□□□□□ -0.21
LRCH3-219ENST00000494069 SIGLEC1Q9BZZ2 1709 aa13.76□□□□□ -0.21
LRCH3-219ENST00000494069 ZFYVE16Q7Z3T8 1539 aa13.76□□□□□ -0.21
LRCH3-219ENST00000494069 BCORL1Q5H9F3 1711 aa13.76□□□□□ -0.21
LRCH3-219ENST00000494069 CDC42BPBQ9Y5S2 1711 aa13.76□□□□□ -0.21
LRCH3-219ENST00000494069 PTPRMP28827 1452 aa13.75□□□□□ -0.21
LRCH3-219ENST00000494069 MAGI2Q86UL8 1455 aa13.74□□□□□ -0.21
LRCH3-219ENST00000494069 MLECQ14165 292 aa13.74□□□□□ -0.21
LRCH3-219ENST00000494069 HECW2Q9P2P5 1572 aa13.74□□□□□ -0.21
LRCH3-219ENST00000494069 ARHGEF12Q9NZN5 1544 aa13.74□□□□□ -0.21
LRCH3-219ENST00000494069 MADDQ8WXG6 1647 aa13.73□□□□□ -0.21
LRCH3-219ENST00000494069 TRAPPC8Q9Y2L5 1435 aa13.73□□□□□ -0.21
LRCH3-219ENST00000494069 ZNF777Q9ULD5 760 aaPredicted RBP13.72□□□□□ -0.21
LRCH3-219ENST00000494069 PREX2Q70Z35 1606 aa13.72□□□□□ -0.21
LRCH3-219ENST00000494069 MYT1LQ9UL68 1186 aa13.71□□□□□ -0.21
LRCH3-219ENST00000494069 CDC42BPAQ5VT25 1732 aa13.7□□□□□ -0.22
LRCH3-219ENST00000494069 GPATCH8Q9UKJ3 1502 aaKnown RBP13.7□□□□□ -0.22
LRCH3-219ENST00000494069 ATP10AO60312 1499 aa13.7□□□□□ -0.22
LRCH3-219ENST00000494069 ZNF518AQ6AHZ1 1483 aa13.7□□□□□ -0.22
LRCH3-219ENST00000494069 ABCC1P33527 1531 aa13.69□□□□□ -0.22
LRCH3-219ENST00000494069 KDM5CP41229 1560 aa13.69□□□□□ -0.22
LRCH3-219ENST00000494069 MTUS2Q5JR59 1369 aa13.69□□□□□ -0.22
LRCH3-219ENST00000494069 C9orf84Q5VXU9 1444 aa13.68□□□□□ -0.22
LRCH3-219ENST00000494069 HNRNPMP52272 730 aaKnown RBP eCLIP13.68□□□□□ -0.22
LRCH3-219ENST00000494069 RIMS1Q86UR5 1692 aaKnown RBP13.68□□□□□ -0.22
LRCH3-219ENST00000494069 CFDP1Q9UEE9 299 aaPredicted RBP13.66□□□□□ -0.22
LRCH3-219ENST00000494069 CCNB3Q8WWL7 1395 aa13.66□□□□□ -0.22
LRCH3-219ENST00000494069 SAMD9LQ8IVG5 1584 aa13.66□□□□□ -0.22
LRCH3-219ENST00000494069 ITSN2Q9NZM3 1697 aa13.66□□□□□ -0.22
LRCH3-219ENST00000494069 MLH3Q9UHC1 1453 aa13.65□□□□□ -0.22
LRCH3-219ENST00000494069 DIP2CQ9Y2E4 1556 aa13.65□□□□□ -0.22
LRCH3-219ENST00000494069 ZNF644Q9H582 1327 aaPredicted RBP13.64□□□□□ -0.23
LRCH3-219ENST00000494069 ABCA6Q8N139 1617 aa13.64□□□□□ -0.23
LRCH3-219ENST00000494069 SYCP2Q9BX26 1530 aa13.64□□□□□ -0.23
LRCH3-219ENST00000494069 CEBPAP49715 358 aaPredicted RBP13.63□□□□□ -0.23
LRCH3-219ENST00000494069 KIDINS220Q9ULH0 1771 aa13.61□□□□□ -0.23
LRCH3-219ENST00000494069 EHBP1L1Q8N3D4 1523 aa13.61□□□□□ -0.23
LRCH3-219ENST00000494069 TIAM1Q13009 1591 aa13.61□□□□□ -0.23
LRCH3-219ENST00000494069 SPAG9O60271 1321 aaKnown RBP13.61□□□□□ -0.23
LRCH3-219ENST00000494069 LMTK3Q96Q04 1460 aa13.61□□□□□ -0.23
LRCH3-219ENST00000494069 HSPA2P54652 639 aa13.6□□□□□ -0.23
LRCH3-219ENST00000494069 VPS8Q8N3P4 1428 aa13.6□□□□□ -0.23
LRCH3-219ENST00000494069 KIAA1107Q9UPP5 1409 aa13.6□□□□□ -0.23
LRCH3-219ENST00000494069 FER1L4A9Z1Z3 1794 aa13.6□□□□□ -0.23
LRCH3-219ENST00000494069 CNKSR2Q8WXI2 1034 aa13.59□□□□□ -0.23
LRCH3-219ENST00000494069 REREQ9P2R6 1566 aa13.58□□□□□ -0.24
LRCH3-219ENST00000494069 NCOA2Q15596 1464 aa13.57□□□□□ -0.24
LRCH3-219ENST00000494069 PLEKHH2Q8IVE3 1493 aa13.57□□□□□ -0.24
LRCH3-219ENST00000494069 KANK4Q5T7N3 995 aaPredicted RBP13.57□□□□□ -0.24
LRCH3-219ENST00000494069 AGLP35573 1532 aa13.56□□□□□ -0.24
LRCH3-219ENST00000494069 MBD5Q9P267 1494 aa13.55□□□□□ -0.24
LRCH3-219ENST00000494069 ILDR1Q86SU0 546 aaPredicted RBP13.54□□□□□ -0.24
LRCH3-219ENST00000494069 LRRC9Q6ZRR7 1453 aa13.54□□□□□ -0.24
LRCH3-219ENST00000494069 ATP7AQ04656 1500 aa13.54□□□□□ -0.24
LRCH3-219ENST00000494069 INO80Q9ULG1 1556 aaPredicted RBP13.53□□□□□ -0.24
LRCH3-219ENST00000494069 SUPT6HQ7KZ85 1726 aaKnown RBP13.53□□□□□ -0.24
LRCH3-219ENST00000494069 A2MP01023 1474 aa13.51□□□□□ -0.25
LRCH3-219ENST00000494069 CAMSAP2Q08AD1 1489 aa13.5□□□□□ -0.25
LRCH3-219ENST00000494069 ESF1Q9H501 851 aaKnown RBP13.5□□□□□ -0.25
LRCH3-219ENST00000494069 GGT6Q6P531 493 aa13.49□□□□□ -0.25
LRCH3-219ENST00000494069 PLXNC1O60486 1568 aa13.49□□□□□ -0.25
LRCH3-219ENST00000494069 C3P01024 1663 aa13.48□□□□□ -0.25
LRCH3-219ENST00000494069 MAP3K1Q13233 1512 aa13.47□□□□□ -0.25
LRCH3-219ENST00000494069 RTEL1-TNFRSF6BF6WH68 1400 aa13.47□□□□□ -0.25
LRCH3-219ENST00000494069 ZMYM3Q14202 1370 aa13.46□□□□□ -0.25
LRCH3-219ENST00000494069 HOXD11P31277 338 aaPredicted RBP13.46□□□□□ -0.25
LRCH3-219ENST00000494069 CCDC141Q6ZP82 1450 aa13.46□□□□□ -0.25
LRCH3-219ENST00000494069 CNTLNQ9NXG0 1405 aa13.45□□□□□ -0.26
LRCH3-219ENST00000494069 DHX29Q7Z478 1369 aaKnown RBP13.45□□□□□ -0.26
LRCH3-219ENST00000494069 PREX1Q8TCU6 1659 aa13.44□□□□□ -0.26
LRCH3-219ENST00000494069 RSPH4AQ5TD94 716 aa13.44□□□□□ -0.26
LRCH3-219ENST00000494069 UHRF1BP1Q6BDS2 1440 aa13.44□□□□□ -0.26
LRCH3-219ENST00000494069 KIF3BO15066 747 aa13.43□□□□□ -0.26
LRCH3-219ENST00000494069 ADGBQ8N7X0 1667 aa13.43□□□□□ -0.26
LRCH3-219ENST00000494069 SETD1BQ9UPS6 1966 aaKnown RBP13.42□□□□□ -0.26
LRCH3-219ENST00000494069 MYOM3Q5VTT5 1437 aa13.42□□□□□ -0.26
LRCH3-219ENST00000494069 TSPY4P0CV99 314 aa13.42□□□□□ -0.26
LRCH3-219ENST00000494069 TSPY10P0CW01 314 aa13.42□□□□□ -0.26
LRCH3-219ENST00000494069 APLP2Q06481 763 aa13.42□□□□□ -0.26
LRCH3-219ENST00000494069 CLTCQ00610 1675 aaKnown RBP13.42□□□□□ -0.26
LRCH3-219ENST00000494069 ARHGEF5Q12774 1597 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms