RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 HECW2Q9P2P5 1572 aa20.24■□□□□ 0.83
UPF3A-210ENST00000493727 ABCA8O94911 1581 aa20.23■□□□□ 0.83
UPF3A-210ENST00000493727 MAGI3Q5TCQ9 1506 aa20.22■□□□□ 0.83
UPF3A-210ENST00000493727 SPDYE1Q8NFV5 336 aaPredicted RBP20.19■□□□□ 0.82
UPF3A-210ENST00000493727 GOLGA3Q08378 1498 aa20.18■□□□□ 0.82
UPF3A-210ENST00000493727 PITPNM1O00562 1244 aa20.17■□□□□ 0.82
UPF3A-210ENST00000493727 CD109Q6YHK3 1445 aa20.15■□□□□ 0.82
UPF3A-210ENST00000493727 PRXQ9BXM0 1461 aa20.12■□□□□ 0.81
UPF3A-210ENST00000493727 KIF21BO75037 1637 aa20.1■□□□□ 0.81
UPF3A-210ENST00000493727 STAG3Q9UJ98 1225 aa20.09■□□□□ 0.81
UPF3A-210ENST00000493727 CLEC11AQ9Y240 323 aa20.08■□□□□ 0.81
UPF3A-210ENST00000493727 ARAP3Q8WWN8 1544 aa20.07■□□□□ 0.8
UPF3A-210ENST00000493727 KCNH8Q96L42 1107 aa20.04■□□□□ 0.8
UPF3A-210ENST00000493727 ABCA9Q8IUA7 1624 aa20.03■□□□□ 0.8
UPF3A-210ENST00000493727 FAM9AQ8IZU1 332 aaPredicted RBP20.01■□□□□ 0.79
UPF3A-210ENST00000493727 FBXO3Q9UK99 471 aa20.01■□□□□ 0.79
UPF3A-210ENST00000493727 ATP10BO94823 1461 aa20■□□□□ 0.79
UPF3A-210ENST00000493727 SAMD9Q5K651 1589 aa19.99■□□□□ 0.79
UPF3A-210ENST00000493727 CHRDL2Q6WN34 429 aa19.98■□□□□ 0.79
UPF3A-210ENST00000493727 ADAMTSL3P82987 1691 aa19.97■□□□□ 0.79
UPF3A-210ENST00000493727 EEA1Q15075 1411 aa19.97■□□□□ 0.79
UPF3A-210ENST00000493727 FRMPD1Q5SYB0 1578 aa19.94■□□□□ 0.78
UPF3A-210ENST00000493727 PHLDB1Q86UU1 1377 aa19.94■□□□□ 0.78
UPF3A-210ENST00000493727 RAPGEF6Q8TEU7 1601 aa19.93■□□□□ 0.78
UPF3A-210ENST00000493727 PTPRMP28827 1452 aa19.92■□□□□ 0.78
UPF3A-210ENST00000493727 NEO1Q92859 1461 aa19.92■□□□□ 0.78
UPF3A-210ENST00000493727 PRR29P0C7W0 189 aa19.91■□□□□ 0.78
UPF3A-210ENST00000493727 ARID3CA6NKF2 412 aa19.9■□□□□ 0.78
UPF3A-210ENST00000493727 BCORL1Q5H9F3 1711 aa19.9■□□□□ 0.78
UPF3A-210ENST00000493727 P3H3Q8IVL6 736 aa19.87■□□□□ 0.77
UPF3A-210ENST00000493727 NUP153P49790 1475 aaKnown RBP19.86■□□□□ 0.77
UPF3A-210ENST00000493727 MADDQ8WXG6 1647 aa19.86■□□□□ 0.77
UPF3A-210ENST00000493727 RAPGEF3O95398 923 aa19.84■□□□□ 0.77
UPF3A-210ENST00000493727 ARHGEF40Q8TER5 1519 aa19.83■□□□□ 0.77
UPF3A-210ENST00000493727 RICTORQ6R327 1708 aa19.82■□□□□ 0.76
UPF3A-210ENST00000493727 FXR2P51116 673 aaKnown RBP eCLIP19.82■□□□□ 0.76
UPF3A-210ENST00000493727 PCF11O94913 1555 aaKnown RBP19.82■□□□□ 0.76
UPF3A-210ENST00000493727 LMTK3Q96Q04 1460 aa19.79■□□□□ 0.76
UPF3A-210ENST00000493727 VASPP50552 380 aaPredicted RBP19.78■□□□□ 0.76
UPF3A-210ENST00000493727 FBXO41Q8TF61 875 aa19.78■□□□□ 0.76
UPF3A-210ENST00000493727 FHOD3Q2V2M9 1422 aa19.76■□□□□ 0.75
UPF3A-210ENST00000493727 RIMS1Q86UR5 1692 aaKnown RBP19.76■□□□□ 0.75
UPF3A-210ENST00000493727 CFAP74Q9C0B2 1584 aa19.75■□□□□ 0.75
UPF3A-210ENST00000493727 ZMYM4Q5VZL5 1548 aa19.75■□□□□ 0.75
UPF3A-210ENST00000493727 SIGLEC1Q9BZZ2 1709 aa19.74■□□□□ 0.75
UPF3A-210ENST00000493727 PIP4P2Q8N4L2 257 aa19.74■□□□□ 0.75
UPF3A-210ENST00000493727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.74■□□□□ 0.75
UPF3A-210ENST00000493727 DENND4BO75064 1496 aaPredicted RBP19.73■□□□□ 0.75
UPF3A-210ENST00000493727 EFCAB5A4FU69 1503 aa19.73■□□□□ 0.75
UPF3A-210ENST00000493727 TTC37Q6PGP7 1564 aa19.73■□□□□ 0.75
UPF3A-210ENST00000493727 CREBZFQ9NS37 354 aa19.72■□□□□ 0.75
UPF3A-210ENST00000493727 FANCAO15360 1455 aa19.72■□□□□ 0.75
UPF3A-210ENST00000493727 AKNAQ7Z591 1439 aa19.71■□□□□ 0.75
UPF3A-210ENST00000493727 ARID4BQ4LE39 1312 aaPredicted RBP19.69■□□□□ 0.74
UPF3A-210ENST00000493727 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
UPF3A-210ENST00000493727 MIER1Q8N108 512 aa19.67■□□□□ 0.74
UPF3A-210ENST00000493727 ZFYVE16Q7Z3T8 1539 aa19.66■□□□□ 0.74
UPF3A-210ENST00000493727 YEATS2Q9ULM3 1422 aa19.66■□□□□ 0.74
UPF3A-210ENST00000493727 PLEKHD1A6NEE1 506 aa19.65■□□□□ 0.74
UPF3A-210ENST00000493727 CHADLQ6NUI6 762 aa19.64■□□□□ 0.73
UPF3A-210ENST00000493727 MAGI2Q86UL8 1455 aa19.64■□□□□ 0.73
UPF3A-210ENST00000493727 HECW1Q76N89 1606 aa19.63■□□□□ 0.73
UPF3A-210ENST00000493727 PRKAR2AP13861 404 aaKnown RBP19.63■□□□□ 0.73
UPF3A-210ENST00000493727 PLCD3Q8N3E9 789 aa19.63■□□□□ 0.73
UPF3A-210ENST00000493727 FER1L4A9Z1Z3 1794 aa19.62■□□□□ 0.73
UPF3A-210ENST00000493727 CDK13Q14004 1512 aaKnown RBP19.62■□□□□ 0.73
UPF3A-210ENST00000493727 POGZQ7Z3K3 1410 aa19.61■□□□□ 0.73
UPF3A-210ENST00000493727 UBTFP17480 764 aaKnown RBP19.58■□□□□ 0.72
UPF3A-210ENST00000493727 HSPA2P54652 639 aa19.57■□□□□ 0.72
UPF3A-210ENST00000493727 PLCH2O75038 1416 aa19.57■□□□□ 0.72
UPF3A-210ENST00000493727 ARHGEF12Q9NZN5 1544 aa19.56■□□□□ 0.72
UPF3A-210ENST00000493727 MNX1P50219 401 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-210ENST00000493727 FMN1Q68DA7 1419 aa19.55■□□□□ 0.72
UPF3A-210ENST00000493727 MYO5CQ9NQX4 1742 aa19.55■□□□□ 0.72
UPF3A-210ENST00000493727 SCAPERQ9BY12 1400 aa19.54■□□□□ 0.72
UPF3A-210ENST00000493727 IFNLR1Q8IU57 520 aaPredicted RBP19.54■□□□□ 0.72
UPF3A-210ENST00000493727 C9orf84Q5VXU9 1444 aa19.51■□□□□ 0.71
UPF3A-210ENST00000493727 PLEKHG5O94827 1062 aa19.51■□□□□ 0.71
UPF3A-210ENST00000493727 PREX1Q8TCU6 1659 aa19.51■□□□□ 0.71
UPF3A-210ENST00000493727 ATP10AO60312 1499 aa19.5■□□□□ 0.71
UPF3A-210ENST00000493727 KIF14Q15058 1648 aa19.5■□□□□ 0.71
UPF3A-210ENST00000493727 KDM5CP41229 1560 aa19.49■□□□□ 0.71
UPF3A-210ENST00000493727 ARHGAP35Q9NRY4 1499 aa19.48■□□□□ 0.71
UPF3A-210ENST00000493727 LOC105371045A0A1W2PR82 267 aa19.47■□□□□ 0.71
UPF3A-210ENST00000493727 MLECQ14165 292 aa19.47■□□□□ 0.71
UPF3A-210ENST00000493727 CDK11AQ9UQ88 783 aaPredicted RBP19.46■□□□□ 0.71
UPF3A-210ENST00000493727 FARP1Q9Y4F1 1045 aaPredicted RBP19.46■□□□□ 0.71
UPF3A-210ENST00000493727 ZNF518AQ6AHZ1 1483 aa19.45■□□□□ 0.7
UPF3A-210ENST00000493727 LRRIQ1Q96JM4 1722 aa19.45■□□□□ 0.7
UPF3A-210ENST00000493727 CERKQ8TCT0 537 aa19.44■□□□□ 0.7
UPF3A-210ENST00000493727 STRCQ7RTU9 1775 aa19.44■□□□□ 0.7
UPF3A-210ENST00000493727 ATP1B4Q9UN42 357 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-210ENST00000493727 REREQ9P2R6 1566 aa19.43■□□□□ 0.7
UPF3A-210ENST00000493727 DIP2CQ9Y2E4 1556 aa19.43■□□□□ 0.7
UPF3A-210ENST00000493727 SETD1BQ9UPS6 1966 aaKnown RBP19.43■□□□□ 0.7
UPF3A-210ENST00000493727 EFCAB2Q5VUJ9 269 aa19.42■□□□□ 0.7
UPF3A-210ENST00000493727 TROQ12816 1431 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-210ENST00000493727 ZBTB47Q9UFB7 747 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-210ENST00000493727 CDC42BPBQ9Y5S2 1711 aa19.4■□□□□ 0.7
UPF3A-210ENST00000493727 ARHGAP5Q13017 1502 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms