RNA–Protein interactions for RNA: ENST00000493711.1

SNX17-208, Transcript of sorting nexin 17, humanhuman

TSL 3

Gene SNX17, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-208ENST00000493711 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
SNX17-208ENST00000493711 NCOA2Q15596 1464 aa19.16■□□□□ 0.66
SNX17-208ENST00000493711 GLI2P10070 1586 aa19.15■□□□□ 0.66
SNX17-208ENST00000493711 SUPT6HQ7KZ85 1726 aaKnown RBP19.13■□□□□ 0.65
SNX17-208ENST00000493711 KIF13AQ9H1H9 1805 aa19.13■□□□□ 0.65
SNX17-208ENST00000493711 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.1■□□□□ 0.65
SNX17-208ENST00000493711 CD109Q6YHK3 1445 aa19.1■□□□□ 0.65
SNX17-208ENST00000493711 PPARGC1BQ86YN6 1023 aaKnown RBP19.1■□□□□ 0.65
SNX17-208ENST00000493711 DIP2BQ9P265 1576 aa19.1■□□□□ 0.65
SNX17-208ENST00000493711 PLCH2O75038 1416 aa19.09■□□□□ 0.65
SNX17-208ENST00000493711 ABCA9Q8IUA7 1624 aa19.09■□□□□ 0.65
SNX17-208ENST00000493711 MYOM3Q5VTT5 1437 aa19.08■□□□□ 0.64
SNX17-208ENST00000493711 ARAP3Q8WWN8 1544 aa19.07■□□□□ 0.64
SNX17-208ENST00000493711 EFCAB2Q5VUJ9 269 aa19.07■□□□□ 0.64
SNX17-208ENST00000493711 CFDP1Q9UEE9 299 aaPredicted RBP19.07■□□□□ 0.64
SNX17-208ENST00000493711 MIA2Q96PC5 1412 aa19.07■□□□□ 0.64
SNX17-208ENST00000493711 GPATCH8Q9UKJ3 1502 aaKnown RBP19.06■□□□□ 0.64
SNX17-208ENST00000493711 PHLDB1Q86UU1 1377 aa19.06■□□□□ 0.64
SNX17-208ENST00000493711 TTC37Q6PGP7 1564 aa19.04■□□□□ 0.64
SNX17-208ENST00000493711 TEX14Q8IWB6 1497 aa19.02■□□□□ 0.63
SNX17-208ENST00000493711 FGD6Q6ZV73 1430 aa19■□□□□ 0.63
SNX17-208ENST00000493711 MAP3K4Q9Y6R4 1608 aa19■□□□□ 0.63
SNX17-208ENST00000493711 ARHGAP5Q13017 1502 aa19■□□□□ 0.63
SNX17-208ENST00000493711 ITSN2Q9NZM3 1697 aa18.98■□□□□ 0.63
SNX17-208ENST00000493711 FANCAO15360 1455 aa18.98■□□□□ 0.63
SNX17-208ENST00000493711 PLEKHH2Q8IVE3 1493 aa18.98■□□□□ 0.63
SNX17-208ENST00000493711 NEO1Q92859 1461 aa18.98■□□□□ 0.63
SNX17-208ENST00000493711 PREX2Q70Z35 1606 aa18.97■□□□□ 0.63
SNX17-208ENST00000493711 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.96■□□□□ 0.63
SNX17-208ENST00000493711 ZNF777Q9ULD5 760 aaPredicted RBP18.96■□□□□ 0.63
SNX17-208ENST00000493711 MYO5CQ9NQX4 1742 aa18.96■□□□□ 0.63
SNX17-208ENST00000493711 RRBP1Q9P2E9 1410 aaKnown RBP18.95■□□□□ 0.62
SNX17-208ENST00000493711 RSPH4AQ5TD94 716 aa18.95■□□□□ 0.62
SNX17-208ENST00000493711 RNF39Q9H2S5 420 aa18.95■□□□□ 0.62
SNX17-208ENST00000493711 KDM6BO15054 1643 aa18.95■□□□□ 0.62
SNX17-208ENST00000493711 CFAP74Q9C0B2 1584 aa18.94■□□□□ 0.62
SNX17-208ENST00000493711 KIAA1107Q9UPP5 1409 aa18.94■□□□□ 0.62
SNX17-208ENST00000493711 AKNAQ7Z591 1439 aa18.93■□□□□ 0.62
SNX17-208ENST00000493711 TCOF1Q13428 1488 aaKnown RBP18.93■□□□□ 0.62
SNX17-208ENST00000493711 CDC42BPAQ5VT25 1732 aa18.91■□□□□ 0.62
SNX17-208ENST00000493711 FAM50AQ14320 339 aaKnown RBP18.91■□□□□ 0.62
SNX17-208ENST00000493711 CAMSAP2Q08AD1 1489 aa18.9■□□□□ 0.62
SNX17-208ENST00000493711 ZNF644Q9H582 1327 aaPredicted RBP18.89■□□□□ 0.61
SNX17-208ENST00000493711 ADGRL1O94910 1474 aa18.89■□□□□ 0.61
SNX17-208ENST00000493711 PTPN23Q9H3S7 1636 aa18.88■□□□□ 0.61
SNX17-208ENST00000493711 CDC42BPBQ9Y5S2 1711 aa18.88■□□□□ 0.61
SNX17-208ENST00000493711 SCAPERQ9BY12 1400 aa18.87■□□□□ 0.61
SNX17-208ENST00000493711 HNRNPMP52272 730 aaKnown RBP eCLIP18.85■□□□□ 0.61
SNX17-208ENST00000493711 TRIM26Q12899 539 aaPredicted RBP18.85■□□□□ 0.61
SNX17-208ENST00000493711 SAMD9LQ8IVG5 1584 aa18.85■□□□□ 0.61
SNX17-208ENST00000493711 ABCC1P33527 1531 aa18.84■□□□□ 0.61
SNX17-208ENST00000493711 DENND4BO75064 1496 aaPredicted RBP18.84■□□□□ 0.61
SNX17-208ENST00000493711 TSPY4P0CV99 314 aa18.83■□□□□ 0.6
SNX17-208ENST00000493711 TSPY10P0CW01 314 aa18.83■□□□□ 0.6
SNX17-208ENST00000493711 MBD5Q9P267 1494 aa18.83■□□□□ 0.6
SNX17-208ENST00000493711 PPRC1Q5VV67 1664 aaKnown RBP18.82■□□□□ 0.6
SNX17-208ENST00000493711 CACNB1Q02641 598 aaPredicted RBP18.82■□□□□ 0.6
SNX17-208ENST00000493711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.82■□□□□ 0.62e-8■□□□□ 8.9
SNX17-208ENST00000493711 ZNF518AQ6AHZ1 1483 aa18.82■□□□□ 0.6
SNX17-208ENST00000493711 ARHGEF5Q12774 1597 aa18.81■□□□□ 0.6
SNX17-208ENST00000493711 CCDC141Q6ZP82 1450 aa18.81■□□□□ 0.6
SNX17-208ENST00000493711 POGZQ7Z3K3 1410 aa18.81■□□□□ 0.6
SNX17-208ENST00000493711 SYCP2Q9BX26 1530 aa18.8■□□□□ 0.6
SNX17-208ENST00000493711 ARHGEF12Q9NZN5 1544 aa18.79■□□□□ 0.6
SNX17-208ENST00000493711 TSPOAP1O95153 1857 aa18.78■□□□□ 0.6
SNX17-208ENST00000493711 DAPK1P53355 1430 aa18.78■□□□□ 0.6
SNX17-208ENST00000493711 TRAPPC8Q9Y2L5 1435 aa18.78■□□□□ 0.6
SNX17-208ENST00000493711 SPAG9O60271 1321 aaKnown RBP18.77■□□□□ 0.6
SNX17-208ENST00000493711 ABCC5O15440 1437 aa18.77■□□□□ 0.6
SNX17-208ENST00000493711 AFAP1Q8N556 730 aa18.77■□□□□ 0.6
SNX17-208ENST00000493711 SHANK2Q9UPX8 1470 aa18.77■□□□□ 0.59
SNX17-208ENST00000493711 RTEL1-TNFRSF6BF6WH68 1400 aa18.75■□□□□ 0.59
SNX17-208ENST00000493711 RAPGEF3O95398 923 aa18.75■□□□□ 0.59
SNX17-208ENST00000493711 DNMT1P26358 1616 aaKnown RBP18.74■□□□□ 0.59
SNX17-208ENST00000493711 MAGI2Q86UL8 1455 aa18.73■□□□□ 0.59
SNX17-208ENST00000493711 ITGAEP38570 1179 aa18.73■□□□□ 0.59
SNX17-208ENST00000493711 C9orf84Q5VXU9 1444 aa18.73■□□□□ 0.59
SNX17-208ENST00000493711 MLH3Q9UHC1 1453 aa18.72■□□□□ 0.59
SNX17-208ENST00000493711 ROCK1Q13464 1354 aa18.72■□□□□ 0.59
SNX17-208ENST00000493711 ANKRD30AQ9BXX3 1397 aa18.72■□□□□ 0.59
SNX17-208ENST00000493711 MYT1LQ9UL68 1186 aa18.71■□□□□ 0.59
SNX17-208ENST00000493711 KDM5CP41229 1560 aa18.71■□□□□ 0.59
SNX17-208ENST00000493711 COL17A1Q9UMD9 1497 aaPredicted RBP18.71■□□□□ 0.59
SNX17-208ENST00000493711 ZMYM4Q5VZL5 1548 aa18.69■□□□□ 0.58
SNX17-208ENST00000493711 HECW2Q9P2P5 1572 aa18.69■□□□□ 0.58
SNX17-208ENST00000493711 MAST1Q9Y2H9 1570 aa18.69■□□□□ 0.58
SNX17-208ENST00000493711 CHIC2Q9UKJ5 165 aa18.68■□□□□ 0.58
SNX17-208ENST00000493711 ADGRL2O95490 1459 aa18.68■□□□□ 0.58
SNX17-208ENST00000493711 PTPRKQ15262 1439 aa18.67■□□□□ 0.58
SNX17-208ENST00000493711 NCOA1Q15788 1441 aa18.66■□□□□ 0.58
SNX17-208ENST00000493711 ATP7AQ04656 1500 aa18.65■□□□□ 0.58
SNX17-208ENST00000493711 FRMPD1Q5SYB0 1578 aa18.64■□□□□ 0.58
SNX17-208ENST00000493711 RICTORQ6R327 1708 aa18.64■□□□□ 0.57
SNX17-208ENST00000493711 ACIN1Q9UKV3 1341 aaKnown RBP18.64■□□□□ 0.57
SNX17-208ENST00000493711 ZFYVE16Q7Z3T8 1539 aa18.64■□□□□ 0.57
SNX17-208ENST00000493711 INO80Q9ULG1 1556 aaPredicted RBP18.63■□□□□ 0.57
SNX17-208ENST00000493711 RRP7BPQ9NSQ0 103 aa18.62■□□□□ 0.57
SNX17-208ENST00000493711 KIF15Q9NS87 1388 aa18.62■□□□□ 0.57
SNX17-208ENST00000493711 CROCC2H7BZ55 1655 aa18.62■□□□□ 0.57
SNX17-208ENST00000493711 HFM1A2PYH4 1435 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms