RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ACIN1Q9UKV3 1341 aaKnown RBP15.77■□□□□ 0.12
USP4-214ENST00000491791 PTPRKQ15262 1439 aa15.77■□□□□ 0.11
USP4-214ENST00000491791 TEX14Q8IWB6 1497 aa15.76■□□□□ 0.11
USP4-214ENST00000491791 ABCA8O94911 1581 aa15.75■□□□□ 0.11
USP4-214ENST00000491791 CDK11AQ9UQ88 783 aaPredicted RBP15.74■□□□□ 0.11
USP4-214ENST00000491791 PPRC1Q5VV67 1664 aaKnown RBP15.73■□□□□ 0.11
USP4-214ENST00000491791 ITGAEP38570 1179 aa15.73■□□□□ 0.11
USP4-214ENST00000491791 DIEXFQ68CQ4 756 aaKnown RBP15.73■□□□□ 0.11
USP4-214ENST00000491791 TROQ12816 1431 aaPredicted RBP15.73■□□□□ 0.11
USP4-214ENST00000491791 NAIPQ13075 1403 aa15.73■□□□□ 0.11
USP4-214ENST00000491791 ZCCHC11Q5TAX3 1644 aaKnown RBP15.72■□□□□ 0.11
USP4-214ENST00000491791 GCC2Q8IWJ2 1684 aa15.71■□□□□ 0.11
USP4-214ENST00000491791 MAP3K4Q9Y6R4 1608 aa15.71■□□□□ 0.11
USP4-214ENST00000491791 ROCK1Q13464 1354 aa15.69■□□□□ 0.1
USP4-214ENST00000491791 WDR7Q9Y4E6 1490 aa15.69■□□□□ 0.1
USP4-214ENST00000491791 ADGRL1O94910 1474 aa15.67■□□□□ 0.1
USP4-214ENST00000491791 ITSN2Q9NZM3 1697 aa15.66■□□□□ 0.1
USP4-214ENST00000491791 DNMT1P26358 1616 aaKnown RBP15.65■□□□□ 0.1
USP4-214ENST00000491791 COL17A1Q9UMD9 1497 aaPredicted RBP15.65■□□□□ 0.1
USP4-214ENST00000491791 KCNH8Q96L42 1107 aa15.63■□□□□ 0.09
USP4-214ENST00000491791 CD109Q6YHK3 1445 aa15.62■□□□□ 0.09
USP4-214ENST00000491791 ATP10BO94823 1461 aa15.62■□□□□ 0.09
USP4-214ENST00000491791 GPATCH8Q9UKJ3 1502 aaKnown RBP15.62■□□□□ 0.09
USP4-214ENST00000491791 DAPK1P53355 1430 aa15.61■□□□□ 0.09
USP4-214ENST00000491791 ABCC5O15440 1437 aa15.6■□□□□ 0.09
USP4-214ENST00000491791 ADGRL2O95490 1459 aa15.57■□□□□ 0.08
USP4-214ENST00000491791 KIF14Q15058 1648 aa15.57■□□□□ 0.08
USP4-214ENST00000491791 CAMSAP2Q08AD1 1489 aa15.54■□□□□ 0.08
USP4-214ENST00000491791 PLEKHD1A6NEE1 506 aa15.54■□□□□ 0.08
USP4-214ENST00000491791 PPP1R15AO75807 674 aaPredicted RBP15.53■□□□□ 0.08
USP4-214ENST00000491791 CROCC2H7BZ55 1655 aa15.53■□□□□ 0.08
USP4-214ENST00000491791 ADGBQ8N7X0 1667 aa15.53■□□□□ 0.08
USP4-214ENST00000491791 DENND4BO75064 1496 aaPredicted RBP15.52■□□□□ 0.08
USP4-214ENST00000491791 SHANK2Q9UPX8 1470 aa15.52■□□□□ 0.08
USP4-214ENST00000491791 CDC42BPAQ5VT25 1732 aa15.52■□□□□ 0.08
USP4-214ENST00000491791 ARID3CA6NKF2 412 aa15.51■□□□□ 0.07
USP4-214ENST00000491791 SIN3AQ96ST3 1273 aa15.5■□□□□ 0.07
USP4-214ENST00000491791 CFDP1Q9UEE9 299 aaPredicted RBP15.5■□□□□ 0.07
USP4-214ENST00000491791 NCOA1Q15788 1441 aa15.5■□□□□ 0.07
USP4-214ENST00000491791 ARHGEF5Q12774 1597 aa15.49■□□□□ 0.07
USP4-214ENST00000491791 ILDR1Q86SU0 546 aaPredicted RBP15.49■□□□□ 0.07
USP4-214ENST00000491791 HECW2Q9P2P5 1572 aa15.49■□□□□ 0.07
USP4-214ENST00000491791 ARAP3Q8WWN8 1544 aa15.48■□□□□ 0.07
USP4-214ENST00000491791 RRP7BPQ9NSQ0 103 aa15.47■□□□□ 0.07
USP4-214ENST00000491791 ZNF644Q9H582 1327 aaPredicted RBP15.46■□□□□ 0.07
USP4-214ENST00000491791 PREX2Q70Z35 1606 aa15.44■□□□□ 0.06
USP4-214ENST00000491791 RSPH4AQ5TD94 716 aa15.44■□□□□ 0.06
USP4-214ENST00000491791 CHIC2Q9UKJ5 165 aa15.44■□□□□ 0.06
USP4-214ENST00000491791 MPHOSPH9Q99550 1183 aa15.43■□□□□ 0.06
USP4-214ENST00000491791 TONSLQ96HA7 1378 aa15.43■□□□□ 0.06
USP4-214ENST00000491791 ABCA9Q8IUA7 1624 aa15.43■□□□□ 0.06
USP4-214ENST00000491791 MBD5Q9P267 1494 aa15.42■□□□□ 0.06
USP4-214ENST00000491791 ANKRD30AQ9BXX3 1397 aa15.42■□□□□ 0.06
USP4-214ENST00000491791 NEO1Q92859 1461 aa15.41■□□□□ 0.06
USP4-214ENST00000491791 ANKRD30BQ9BXX2 1392 aa15.41■□□□□ 0.06
USP4-214ENST00000491791 NEUROD1Q13562 356 aa15.41■□□□□ 0.06
USP4-214ENST00000491791 KDM5DQ9BY66 1539 aa15.4■□□□□ 0.06
USP4-214ENST00000491791 MIER1Q8N108 512 aa15.4■□□□□ 0.06
USP4-214ENST00000491791 MAST1Q9Y2H9 1570 aa15.4■□□□□ 0.06
USP4-214ENST00000491791 CDC42BPBQ9Y5S2 1711 aa15.4■□□□□ 0.06
USP4-214ENST00000491791 RAPGEF3O95398 923 aa15.39■□□□□ 0.05
USP4-214ENST00000491791 PZPP20742 1482 aa15.39■□□□□ 0.05
USP4-214ENST00000491791 KIAA1107Q9UPP5 1409 aa15.38■□□□□ 0.05
USP4-214ENST00000491791 RPRD2Q5VT52 1461 aaKnown RBP15.38■□□□□ 0.05
USP4-214ENST00000491791 PLEKHH2Q8IVE3 1493 aa15.38■□□□□ 0.05
USP4-214ENST00000491791 SAMD9LQ8IVG5 1584 aa15.37■□□□□ 0.05
USP4-214ENST00000491791 ARID4BQ4LE39 1312 aaPredicted RBP15.37■□□□□ 0.05
USP4-214ENST00000491791 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.37■□□□□ 0.05
USP4-214ENST00000491791 C9orf84Q5VXU9 1444 aa15.36■□□□□ 0.05
USP4-214ENST00000491791 CENPBP07199 599 aaPredicted RBP15.36■□□□□ 0.05
USP4-214ENST00000491791 CCDC141Q6ZP82 1450 aa15.35■□□□□ 0.05
USP4-214ENST00000491791 TRIM52Q96A61 297 aa15.35■□□□□ 0.05
USP4-214ENST00000491791 ANKRD50Q9ULJ7 1429 aa15.34■□□□□ 0.05
USP4-214ENST00000491791 PTPRMP28827 1452 aa15.33■□□□□ 0.05
USP4-214ENST00000491791 MYO5CQ9NQX4 1742 aa15.33■□□□□ 0.04
USP4-214ENST00000491791 TTC37Q6PGP7 1564 aa15.32■□□□□ 0.04
USP4-214ENST00000491791 ADAMTSL3P82987 1691 aa15.32■□□□□ 0.04
USP4-214ENST00000491791 PLCH2O75038 1416 aa15.31■□□□□ 0.04
USP4-214ENST00000491791 PLXNC1O60486 1568 aa15.3■□□□□ 0.04
USP4-214ENST00000491791 TSPY4P0CV99 314 aa15.3■□□□□ 0.04
USP4-214ENST00000491791 TSPY10P0CW01 314 aa15.3■□□□□ 0.04
USP4-214ENST00000491791 CFAP74Q9C0B2 1584 aa15.29■□□□□ 0.04
USP4-214ENST00000491791 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
USP4-214ENST00000491791 FRMPD1Q5SYB0 1578 aa15.28■□□□□ 0.04
USP4-214ENST00000491791 SLC4A1APQ9BWU0 796 aaKnown RBP15.28■□□□□ 0.04
USP4-214ENST00000491791 FANCAO15360 1455 aa15.27■□□□□ 0.04
USP4-214ENST00000491791 BCORL1Q5H9F3 1711 aa15.27■□□□□ 0.04
USP4-214ENST00000491791 ARHGEF40Q8TER5 1519 aa15.27■□□□□ 0.03
USP4-214ENST00000491791 POGZQ7Z3K3 1410 aa15.26■□□□□ 0.03
USP4-214ENST00000491791 KIF15Q9NS87 1388 aa15.26■□□□□ 0.03
USP4-214ENST00000491791 ARHGAP5Q13017 1502 aa15.26■□□□□ 0.03
USP4-214ENST00000491791 MADDQ8WXG6 1647 aa15.25■□□□□ 0.03
USP4-214ENST00000491791 UNC13BO14795 1591 aa15.24■□□□□ 0.03
USP4-214ENST00000491791 SYCP2Q9BX26 1530 aa15.24■□□□□ 0.03
USP4-214ENST00000491791 HNRNPMP52272 730 aaKnown RBP eCLIP15.24■□□□□ 0.03
USP4-214ENST00000491791 FBXO41Q8TF61 875 aa15.24■□□□□ 0.03
USP4-214ENST00000491791 L3MBTL2Q969R5 705 aa15.24■□□□□ 0.03
USP4-214ENST00000491791 RICTORQ6R327 1708 aa15.23■□□□□ 0.03
USP4-214ENST00000491791 ABCC1P33527 1531 aa15.22■□□□□ 0.03
USP4-214ENST00000491791 EFCAB2Q5VUJ9 269 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms