RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 FXR2P51116 673 aaKnown RBP eCLIP10.6□□□□□ -0.71
SYNE1-229ENST00000490866 CLEC11AQ9Y240 323 aa10.6□□□□□ -0.71
SYNE1-229ENST00000490866 LRRC9Q6ZRR7 1453 aa10.59□□□□□ -0.71
SYNE1-229ENST00000490866 ABCA8O94911 1581 aa10.59□□□□□ -0.71
SYNE1-229ENST00000490866 TIAM1Q13009 1591 aa10.59□□□□□ -0.71
SYNE1-229ENST00000490866 PROM2Q8N271 834 aa10.57□□□□□ -0.72
SYNE1-229ENST00000490866 ABCC2Q92887 1545 aa10.57□□□□□ -0.72
SYNE1-229ENST00000490866 TTBK1Q5TCY1 1321 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-229ENST00000490866 ACIN1Q9UKV3 1341 aaKnown RBP10.57□□□□□ -0.72
SYNE1-229ENST00000490866 PCF11O94913 1555 aaKnown RBP10.56□□□□□ -0.72
SYNE1-229ENST00000490866 NUP153P49790 1475 aaKnown RBP10.55□□□□□ -0.72
SYNE1-229ENST00000490866 PLB1Q6P1J6 1458 aa10.55□□□□□ -0.72
SYNE1-229ENST00000490866 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.55□□□□□ -0.72
SYNE1-229ENST00000490866 PIP4P2Q8N4L2 257 aa10.55□□□□□ -0.72
SYNE1-229ENST00000490866 PRR29P0C7W0 189 aa10.54□□□□□ -0.72
SYNE1-229ENST00000490866 ATP10BO94823 1461 aa10.54□□□□□ -0.72
SYNE1-229ENST00000490866 CFAP43Q8NDM7 1665 aa10.53□□□□□ -0.72
SYNE1-229ENST00000490866 EHBP1L1Q8N3D4 1523 aa10.53□□□□□ -0.72
SYNE1-229ENST00000490866 KDM5BQ9UGL1 1544 aa10.53□□□□□ -0.72
SYNE1-229ENST00000490866 TROQ12816 1431 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-229ENST00000490866 KANK4Q5T7N3 995 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-229ENST00000490866 RSPH4AQ5TD94 716 aa10.53□□□□□ -0.72
SYNE1-229ENST00000490866 ARHGEF11O15085 1522 aa10.53□□□□□ -0.72
SYNE1-229ENST00000490866 MIA2Q96PC5 1412 aa10.51□□□□□ -0.73
SYNE1-229ENST00000490866 SUPT6HQ7KZ85 1726 aaKnown RBP10.51□□□□□ -0.73
SYNE1-229ENST00000490866 CYB5RLQ6IPT4 315 aa10.49□□□□□ -0.73
SYNE1-229ENST00000490866 CCNB3Q8WWL7 1395 aa10.49□□□□□ -0.73
SYNE1-229ENST00000490866 ERCC6L2Q5T890 1561 aa10.48□□□□□ -0.73
SYNE1-229ENST00000490866 FKBP8Q14318 412 aa10.47□□□□□ -0.73
SYNE1-229ENST00000490866 RRBP1Q9P2E9 1410 aaKnown RBP10.47□□□□□ -0.73
SYNE1-229ENST00000490866 PPARGC1BQ86YN6 1023 aaKnown RBP10.46□□□□□ -0.73
SYNE1-229ENST00000490866 MYOM3Q5VTT5 1437 aa10.46□□□□□ -0.74
SYNE1-229ENST00000490866 NCOA2Q15596 1464 aa10.46□□□□□ -0.74
SYNE1-229ENST00000490866 PCGF6Q9BYE7 350 aa10.45□□□□□ -0.74
SYNE1-229ENST00000490866 CFDP1Q9UEE9 299 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-229ENST00000490866 RIMBP3CA6NJZ7 1639 aa10.44□□□□□ -0.74
SYNE1-229ENST00000490866 RIMBP3BA6NNM3 1639 aa10.44□□□□□ -0.74
SYNE1-229ENST00000490866 KIF14Q15058 1648 aa10.44□□□□□ -0.74
SYNE1-229ENST00000490866 ADCY10Q96PN6 1610 aa10.44□□□□□ -0.74
SYNE1-229ENST00000490866 RIMBP3Q9UFD9 1639 aa10.44□□□□□ -0.74
SYNE1-229ENST00000490866 CDK13Q14004 1512 aaKnown RBP10.44□□□□□ -0.74
SYNE1-229ENST00000490866 HRCP23327 699 aa10.44□□□□□ -0.74
SYNE1-229ENST00000490866 DNAJC5Q9H3Z4 198 aa10.44□□□□□ -0.74
SYNE1-229ENST00000490866 PHLDB1Q86UU1 1377 aa10.43□□□□□ -0.74
SYNE1-229ENST00000490866 PRKAR2AP13861 404 aaKnown RBP10.43□□□□□ -0.74
SYNE1-229ENST00000490866 EFCAB2Q5VUJ9 269 aa10.43□□□□□ -0.74
SYNE1-229ENST00000490866 LRRIQ1Q96JM4 1722 aa10.43□□□□□ -0.74
SYNE1-229ENST00000490866 WDR7Q9Y4E6 1490 aa10.42□□□□□ -0.74
SYNE1-229ENST00000490866 ARID3CA6NKF2 412 aa10.42□□□□□ -0.74
SYNE1-229ENST00000490866 KCNH8Q96L42 1107 aa10.42□□□□□ -0.74
SYNE1-229ENST00000490866 ZCCHC11Q5TAX3 1644 aaKnown RBP10.42□□□□□ -0.74
SYNE1-229ENST00000490866 PLEKHH2Q8IVE3 1493 aa10.42□□□□□ -0.74
SYNE1-229ENST00000490866 FGD6Q6ZV73 1430 aa10.41□□□□□ -0.74
SYNE1-229ENST00000490866 MAPKBP1O60336 1514 aa10.41□□□□□ -0.74
SYNE1-229ENST00000490866 ARAP3Q8WWN8 1544 aa10.41□□□□□ -0.74
SYNE1-229ENST00000490866 ASXL2Q76L83 1435 aa10.41□□□□□ -0.74
SYNE1-229ENST00000490866 ITSN2Q9NZM3 1697 aa10.41□□□□□ -0.74
SYNE1-229ENST00000490866 TSPY4P0CV99 314 aa10.4□□□□□ -0.74
SYNE1-229ENST00000490866 TSPY10P0CW01 314 aa10.4□□□□□ -0.74
SYNE1-229ENST00000490866 FAM50AQ14320 339 aaKnown RBP10.4□□□□□ -0.74
SYNE1-229ENST00000490866 PLCH2O75038 1416 aa10.4□□□□□ -0.75
SYNE1-229ENST00000490866 GPATCH8Q9UKJ3 1502 aaKnown RBP10.38□□□□□ -0.75
SYNE1-229ENST00000490866 KIAA1107Q9UPP5 1409 aa10.38□□□□□ -0.75
SYNE1-229ENST00000490866 MAGI3Q5TCQ9 1506 aa10.38□□□□□ -0.75
SYNE1-229ENST00000490866 TCOF1Q13428 1488 aaKnown RBP10.37□□□□□ -0.75
SYNE1-229ENST00000490866 ABCC10Q5T3U5 1492 aa10.37□□□□□ -0.75
SYNE1-229ENST00000490866 GLI2P10070 1586 aa10.35□□□□□ -0.75
SYNE1-229ENST00000490866 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.34□□□□□ -0.75
SYNE1-229ENST00000490866 ABCA9Q8IUA7 1624 aa10.34□□□□□ -0.75
SYNE1-229ENST00000490866 PTPN23Q9H3S7 1636 aa10.34□□□□□ -0.75
SYNE1-229ENST00000490866 ROCK1Q13464 1354 aa10.34□□□□□ -0.75
SYNE1-229ENST00000490866 CD109Q6YHK3 1445 aa10.33□□□□□ -0.76
SYNE1-229ENST00000490866 ZNF777Q9ULD5 760 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-229ENST00000490866 MYO5CQ9NQX4 1742 aa10.33□□□□□ -0.76
SYNE1-229ENST00000490866 FBXO3Q9UK99 471 aa10.32□□□□□ -0.76
SYNE1-229ENST00000490866 ARHGAP5Q13017 1502 aa10.32□□□□□ -0.76
SYNE1-229ENST00000490866 CFAP74Q9C0B2 1584 aa10.31□□□□□ -0.76
SYNE1-229ENST00000490866 FAM69CQ0P6D2 419 aa10.31□□□□□ -0.76
SYNE1-229ENST00000490866 CHADLQ6NUI6 762 aa10.31□□□□□ -0.76
SYNE1-229ENST00000490866 CREBZFQ9NS37 354 aa10.31□□□□□ -0.76
SYNE1-229ENST00000490866 AKNAQ7Z591 1439 aa10.31□□□□□ -0.76
SYNE1-229ENST00000490866 TEX14Q8IWB6 1497 aa10.3□□□□□ -0.76
SYNE1-229ENST00000490866 NEO1Q92859 1461 aa10.3□□□□□ -0.76
SYNE1-229ENST00000490866 CDC42BPAQ5VT25 1732 aa10.3□□□□□ -0.76
SYNE1-229ENST00000490866 PREX2Q70Z35 1606 aa10.3□□□□□ -0.76
SYNE1-229ENST00000490866 ANKRD30AQ9BXX3 1397 aa10.3□□□□□ -0.76
SYNE1-229ENST00000490866 HAX1O00165 279 aa10.3□□□□□ -0.76
SYNE1-229ENST00000490866 ZEB1P37275 1124 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-229ENST00000490866 FARP1Q9Y4F1 1045 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-229ENST00000490866 CLSPNQ9HAW4 1339 aa10.3□□□□□ -0.76
SYNE1-229ENST00000490866 ARHGEF5Q12774 1597 aa10.29□□□□□ -0.76
SYNE1-229ENST00000490866 FANCAO15360 1455 aa10.29□□□□□ -0.76
SYNE1-229ENST00000490866 RTEL1-TNFRSF6BF6WH68 1400 aa10.28□□□□□ -0.76
SYNE1-229ENST00000490866 SETD5Q9C0A6 1442 aa10.28□□□□□ -0.76
SYNE1-229ENST00000490866 ITGAEP38570 1179 aa10.28□□□□□ -0.76
SYNE1-229ENST00000490866 CAMSAP2Q08AD1 1489 aa10.28□□□□□ -0.76
SYNE1-229ENST00000490866 SHANK2Q9UPX8 1470 aa10.28□□□□□ -0.76
SYNE1-229ENST00000490866 DAPK1P53355 1430 aa10.27□□□□□ -0.77
SYNE1-229ENST00000490866 PLEKHG5O94827 1062 aa10.27□□□□□ -0.77
SYNE1-229ENST00000490866 CDC42BPBQ9Y5S2 1711 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms