RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 AMER1Q5JTC6 1135 aaPredicted RBP12.27□□□□□ -0.45
CLDN1-202ENST00000490800 SAMD9Q5K651 1589 aa12.26□□□□□ -0.45
CLDN1-202ENST00000490800 UBTFP17480 764 aaKnown RBP12.25□□□□□ -0.45
CLDN1-202ENST00000490800 FHOD3Q2V2M9 1422 aa12.25□□□□□ -0.45
CLDN1-202ENST00000490800 MAGI3Q5TCQ9 1506 aa12.25□□□□□ -0.45
CLDN1-202ENST00000490800 LOC105371045A0A1W2PR82 267 aa12.23□□□□□ -0.45
CLDN1-202ENST00000490800 PLEKHD1A6NEE1 506 aa12.22□□□□□ -0.45
CLDN1-202ENST00000490800 FBXO3Q9UK99 471 aa12.22□□□□□ -0.45
CLDN1-202ENST00000490800 PROM2Q8N271 834 aa12.21□□□□□ -0.45
CLDN1-202ENST00000490800 CFAP43Q8NDM7 1665 aa12.21□□□□□ -0.45
CLDN1-202ENST00000490800 RAPGEF6Q8TEU7 1601 aa12.21□□□□□ -0.46
CLDN1-202ENST00000490800 NUP153P49790 1475 aaKnown RBP12.21□□□□□ -0.46
CLDN1-202ENST00000490800 KIF21BO75037 1637 aa12.19□□□□□ -0.46
CLDN1-202ENST00000490800 ADGRL1O94910 1474 aa12.19□□□□□ -0.46
CLDN1-202ENST00000490800 RAPGEF3O95398 923 aa12.18□□□□□ -0.46
CLDN1-202ENST00000490800 ATP1B4Q9UN42 357 aaPredicted RBP12.18□□□□□ -0.46
CLDN1-202ENST00000490800 PHLDB1Q86UU1 1377 aa12.16□□□□□ -0.46
CLDN1-202ENST00000490800 ARAP3Q8WWN8 1544 aa12.16□□□□□ -0.46
CLDN1-202ENST00000490800 ABCA9Q8IUA7 1624 aa12.15□□□□□ -0.46
CLDN1-202ENST00000490800 EFCAB5A4FU69 1503 aa12.15□□□□□ -0.46
CLDN1-202ENST00000490800 ZNF692Q9BU19 519 aaPredicted RBP12.13□□□□□ -0.47
CLDN1-202ENST00000490800 NEO1Q92859 1461 aa12.12□□□□□ -0.47
CLDN1-202ENST00000490800 ARHGAP35Q9NRY4 1499 aa12.11□□□□□ -0.47
CLDN1-202ENST00000490800 SPDYE2BA6NHP3 402 aa12.09□□□□□ -0.47
CLDN1-202ENST00000490800 SPDYE6P0CI01 402 aa12.09□□□□□ -0.47
CLDN1-202ENST00000490800 SPDYE2Q495Y8 402 aa12.09□□□□□ -0.47
CLDN1-202ENST00000490800 CDK13Q14004 1512 aaKnown RBP12.09□□□□□ -0.47
CLDN1-202ENST00000490800 FMN1Q68DA7 1419 aa12.09□□□□□ -0.47
CLDN1-202ENST00000490800 AKNAQ7Z591 1439 aa12.09□□□□□ -0.47
CLDN1-202ENST00000490800 VASPP50552 380 aaPredicted RBP12.08□□□□□ -0.48
CLDN1-202ENST00000490800 CDK11AQ9UQ88 783 aaPredicted RBP12.08□□□□□ -0.48
CLDN1-202ENST00000490800 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.07□□□□□ -0.48
CLDN1-202ENST00000490800 ARID4BQ4LE39 1312 aaPredicted RBP12.07□□□□□ -0.48
CLDN1-202ENST00000490800 FANCAO15360 1455 aa12.06□□□□□ -0.48
CLDN1-202ENST00000490800 DENND4BO75064 1496 aaPredicted RBP12.06□□□□□ -0.48
CLDN1-202ENST00000490800 EFCAB2Q5VUJ9 269 aa12.04□□□□□ -0.48
CLDN1-202ENST00000490800 PLCH2O75038 1416 aa12.03□□□□□ -0.48
CLDN1-202ENST00000490800 SSUH2Q9Y2M2 353 aa12.03□□□□□ -0.48
CLDN1-202ENST00000490800 TTC37Q6PGP7 1564 aa12.03□□□□□ -0.48
CLDN1-202ENST00000490800 SCAPERQ9BY12 1400 aa12.02□□□□□ -0.49
CLDN1-202ENST00000490800 FRMPD1Q5SYB0 1578 aa12.01□□□□□ -0.49
CLDN1-202ENST00000490800 HECW1Q76N89 1606 aa12.01□□□□□ -0.49
CLDN1-202ENST00000490800 TROQ12816 1431 aaPredicted RBP11.99□□□□□ -0.49
CLDN1-202ENST00000490800 PTPRMP28827 1452 aa11.98□□□□□ -0.49
CLDN1-202ENST00000490800 YEATS2Q9ULM3 1422 aa11.98□□□□□ -0.49
CLDN1-202ENST00000490800 MLECQ14165 292 aa11.98□□□□□ -0.49
CLDN1-202ENST00000490800 AFAP1Q8N556 730 aa11.98□□□□□ -0.49
CLDN1-202ENST00000490800 HECW2Q9P2P5 1572 aa11.97□□□□□ -0.49
CLDN1-202ENST00000490800 CASKIN1Q8WXD9 1431 aa11.97□□□□□ -0.49
CLDN1-202ENST00000490800 CFAP74Q9C0B2 1584 aa11.96□□□□□ -0.49
CLDN1-202ENST00000490800 CLIP1P30622 1438 aa11.96□□□□□ -0.49
CLDN1-202ENST00000490800 CEP162Q5TB80 1403 aa11.96□□□□□ -0.49
CLDN1-202ENST00000490800 RICTORQ6R327 1708 aa11.96□□□□□ -0.49
CLDN1-202ENST00000490800 ADAMTSL3P82987 1691 aa11.96□□□□□ -0.5
CLDN1-202ENST00000490800 MYT1LQ9UL68 1186 aa11.95□□□□□ -0.5
CLDN1-202ENST00000490800 KIF14Q15058 1648 aa11.95□□□□□ -0.5
CLDN1-202ENST00000490800 MAGI2Q86UL8 1455 aa11.95□□□□□ -0.5
CLDN1-202ENST00000490800 POGZQ7Z3K3 1410 aa11.94□□□□□ -0.5
CLDN1-202ENST00000490800 ZFYVE16Q7Z3T8 1539 aa11.94□□□□□ -0.5
CLDN1-202ENST00000490800 BCORL1Q5H9F3 1711 aa11.94□□□□□ -0.5
CLDN1-202ENST00000490800 ARHGAP5Q13017 1502 aa11.93□□□□□ -0.5
CLDN1-202ENST00000490800 ZMYM4Q5VZL5 1548 aa11.93□□□□□ -0.5
CLDN1-202ENST00000490800 ARHGEF40Q8TER5 1519 aa11.93□□□□□ -0.5
CLDN1-202ENST00000490800 ILDR1Q86SU0 546 aaPredicted RBP11.93□□□□□ -0.5
CLDN1-202ENST00000490800 LRRIQ1Q96JM4 1722 aa11.93□□□□□ -0.5
CLDN1-202ENST00000490800 CCDC18Q5T9S5 1454 aa11.92□□□□□ -0.5
CLDN1-202ENST00000490800 PCF11O94913 1555 aaKnown RBP11.92□□□□□ -0.5
CLDN1-202ENST00000490800 ATP10AO60312 1499 aa11.91□□□□□ -0.5
CLDN1-202ENST00000490800 MADDQ8WXG6 1647 aa11.91□□□□□ -0.5
CLDN1-202ENST00000490800 IFNLR1Q8IU57 520 aaPredicted RBP11.91□□□□□ -0.5
CLDN1-202ENST00000490800 ZNF777Q9ULD5 760 aaPredicted RBP11.91□□□□□ -0.5
CLDN1-202ENST00000490800 MYO5CQ9NQX4 1742 aa11.91□□□□□ -0.5
CLDN1-202ENST00000490800 ZNF518AQ6AHZ1 1483 aa11.89□□□□□ -0.51
CLDN1-202ENST00000490800 FYCO1Q9BQS8 1478 aa11.89□□□□□ -0.51
CLDN1-202ENST00000490800 SIGLEC1Q9BZZ2 1709 aa11.88□□□□□ -0.51
CLDN1-202ENST00000490800 C9orf84Q5VXU9 1444 aa11.87□□□□□ -0.51
CLDN1-202ENST00000490800 TRAPPC8Q9Y2L5 1435 aa11.87□□□□□ -0.51
CLDN1-202ENST00000490800 ARHGEF12Q9NZN5 1544 aa11.87□□□□□ -0.51
CLDN1-202ENST00000490800 CEBPAP49715 358 aaPredicted RBP11.87□□□□□ -0.51
CLDN1-202ENST00000490800 HNRNPMP52272 730 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLDN1-202ENST00000490800 HSPA2P54652 639 aa11.87□□□□□ -0.51
CLDN1-202ENST00000490800 STAG3Q9UJ98 1225 aa11.86□□□□□ -0.51
CLDN1-202ENST00000490800 RIMS1Q86UR5 1692 aaKnown RBP11.86□□□□□ -0.51
CLDN1-202ENST00000490800 CDC42BPBQ9Y5S2 1711 aa11.86□□□□□ -0.51
CLDN1-202ENST00000490800 CFDP1Q9UEE9 299 aaPredicted RBP11.85□□□□□ -0.51
CLDN1-202ENST00000490800 MLH3Q9UHC1 1453 aa11.84□□□□□ -0.51
CLDN1-202ENST00000490800 GPATCH8Q9UKJ3 1502 aaKnown RBP11.84□□□□□ -0.51
CLDN1-202ENST00000490800 KDM5CP41229 1560 aa11.84□□□□□ -0.51
CLDN1-202ENST00000490800 LMTK3Q96Q04 1460 aa11.83□□□□□ -0.52
CLDN1-202ENST00000490800 MTUS2Q5JR59 1369 aa11.83□□□□□ -0.52
CLDN1-202ENST00000490800 PREX2Q70Z35 1606 aa11.82□□□□□ -0.52
CLDN1-202ENST00000490800 CCNB3Q8WWL7 1395 aa11.82□□□□□ -0.52
CLDN1-202ENST00000490800 ABCC1P33527 1531 aa11.81□□□□□ -0.52
CLDN1-202ENST00000490800 KLHL34Q8N239 644 aa11.81□□□□□ -0.52
CLDN1-202ENST00000490800 PLCD3Q8N3E9 789 aa11.81□□□□□ -0.52
CLDN1-202ENST00000490800 SPAG9O60271 1321 aaKnown RBP11.81□□□□□ -0.52
CLDN1-202ENST00000490800 ZNF644Q9H582 1327 aaPredicted RBP11.81□□□□□ -0.52
CLDN1-202ENST00000490800 DIP2CQ9Y2E4 1556 aa11.8□□□□□ -0.52
CLDN1-202ENST00000490800 RBM42Q9BTD8 480 aaKnown RBP11.8□□□□□ -0.52
CLDN1-202ENST00000490800 ESF1Q9H501 851 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms