RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CDC42BPBQ9Y5S2 1711 aa28.97■■■□□ 2.23
COL9A3-214ENST00000490398 POGZQ7Z3K3 1410 aa28.94■■■□□ 2.22
COL9A3-214ENST00000490398 VPS8Q8N3P4 1428 aa28.94■■■□□ 2.22
COL9A3-214ENST00000490398 PREX2Q70Z35 1606 aa28.94■■■□□ 2.22
COL9A3-214ENST00000490398 MTUS2Q5JR59 1369 aa28.93■■■□□ 2.22
COL9A3-214ENST00000490398 YEATS2Q9ULM3 1422 aa28.92■■■□□ 2.22
COL9A3-214ENST00000490398 GPATCH8Q9UKJ3 1502 aaKnown RBP28.91■■■□□ 2.22
COL9A3-214ENST00000490398 ZMYM4Q5VZL5 1548 aa28.9■■■□□ 2.22
COL9A3-214ENST00000490398 CDC42BPAQ5VT25 1732 aa28.9■■■□□ 2.22
COL9A3-214ENST00000490398 ARHGEF12Q9NZN5 1544 aa28.89■■■□□ 2.21
COL9A3-214ENST00000490398 AFAP1Q8N556 730 aa28.88■■■□□ 2.21
COL9A3-214ENST00000490398 ARHGEF40Q8TER5 1519 aa28.88■■■□□ 2.21
COL9A3-214ENST00000490398 EHBP1L1Q8N3D4 1523 aa28.84■■■□□ 2.21
COL9A3-214ENST00000490398 ZNF777Q9ULD5 760 aaPredicted RBP28.84■■■□□ 2.21
COL9A3-214ENST00000490398 ZFYVE16Q7Z3T8 1539 aa28.84■■■□□ 2.21
COL9A3-214ENST00000490398 TRAPPC8Q9Y2L5 1435 aa28.83■■■□□ 2.21
COL9A3-214ENST00000490398 ABCC1P33527 1531 aa28.83■■■□□ 2.21
COL9A3-214ENST00000490398 TIAM1Q13009 1591 aa28.83■■■□□ 2.21
COL9A3-214ENST00000490398 CCNB3Q8WWL7 1395 aa28.82■■■□□ 2.2
COL9A3-214ENST00000490398 MAGI2Q86UL8 1455 aa28.8■■■□□ 2.2
COL9A3-214ENST00000490398 SIGLEC1Q9BZZ2 1709 aa28.8■■■□□ 2.2
COL9A3-214ENST00000490398 SAMD9LQ8IVG5 1584 aa28.79■■■□□ 2.2
COL9A3-214ENST00000490398 ZNF518AQ6AHZ1 1483 aa28.79■■■□□ 2.2
COL9A3-214ENST00000490398 ARID4BQ4LE39 1312 aaPredicted RBP28.78■■■□□ 2.2
COL9A3-214ENST00000490398 KDM5CP41229 1560 aa28.78■■■□□ 2.2
COL9A3-214ENST00000490398 CFDP1Q9UEE9 299 aaPredicted RBP28.77■■■□□ 2.2
COL9A3-214ENST00000490398 KANK4Q5T7N3 995 aaPredicted RBP28.76■■■□□ 2.19
COL9A3-214ENST00000490398 ITSN2Q9NZM3 1697 aa28.75■■■□□ 2.19
COL9A3-214ENST00000490398 ZNF644Q9H582 1327 aaPredicted RBP28.74■■■□□ 2.19
COL9A3-214ENST00000490398 NCOA2Q15596 1464 aa28.74■■■□□ 2.19
COL9A3-214ENST00000490398 HNRNPMP52272 730 aaKnown RBP eCLIP28.74■■■□□ 2.19
COL9A3-214ENST00000490398 LRRC9Q6ZRR7 1453 aa28.72■■■□□ 2.19
COL9A3-214ENST00000490398 SYCP2Q9BX26 1530 aa28.72■■■□□ 2.19
COL9A3-214ENST00000490398 ADAMTSL3P82987 1691 aa28.71■■■□□ 2.19
COL9A3-214ENST00000490398 BCORL1Q5H9F3 1711 aa28.71■■■□□ 2.19
COL9A3-214ENST00000490398 ATP10AO60312 1499 aa28.71■■■□□ 2.19
COL9A3-214ENST00000490398 HECW2Q9P2P5 1572 aa28.68■■■□□ 2.18
COL9A3-214ENST00000490398 MLH3Q9UHC1 1453 aa28.68■■■□□ 2.18
COL9A3-214ENST00000490398 MYT1LQ9UL68 1186 aa28.68■■■□□ 2.18
COL9A3-214ENST00000490398 SUPT6HQ7KZ85 1726 aaKnown RBP28.66■■■□□ 2.18
COL9A3-214ENST00000490398 MAP3K1Q13233 1512 aa28.66■■■□□ 2.18
COL9A3-214ENST00000490398 C9orf84Q5VXU9 1444 aa28.66■■■□□ 2.18
COL9A3-214ENST00000490398 DIP2CQ9Y2E4 1556 aa28.66■■■□□ 2.18
COL9A3-214ENST00000490398 MLECQ14165 292 aa28.65■■■□□ 2.18
COL9A3-214ENST00000490398 ABCA6Q8N139 1617 aa28.65■■■□□ 2.18
COL9A3-214ENST00000490398 MADDQ8WXG6 1647 aa28.65■■■□□ 2.18
COL9A3-214ENST00000490398 KIAA1107Q9UPP5 1409 aa28.64■■■□□ 2.18
COL9A3-214ENST00000490398 PTPRMP28827 1452 aa28.61■■■□□ 2.17
COL9A3-214ENST00000490398 PLEKHH2Q8IVE3 1493 aa28.6■■■□□ 2.17
COL9A3-214ENST00000490398 KIDINS220Q9ULH0 1771 aa28.6■■■□□ 2.17
COL9A3-214ENST00000490398 MBD5Q9P267 1494 aa28.59■■■□□ 2.17
COL9A3-214ENST00000490398 SPAG9O60271 1321 aaKnown RBP28.58■■■□□ 2.17
COL9A3-214ENST00000490398 RIMS1Q86UR5 1692 aaKnown RBP28.54■■■□□ 2.16
COL9A3-214ENST00000490398 CAMSAP2Q08AD1 1489 aa28.53■■■□□ 2.16
COL9A3-214ENST00000490398 REREQ9P2R6 1566 aa28.52■■■□□ 2.16
COL9A3-214ENST00000490398 INO80Q9ULG1 1556 aaPredicted RBP28.5■■■□□ 2.15
COL9A3-214ENST00000490398 ATP7AQ04656 1500 aa28.5■■■□□ 2.15
COL9A3-214ENST00000490398 APLP2Q06481 763 aa28.5■■■□□ 2.15
COL9A3-214ENST00000490398 PLPPR3Q6T4P5 718 aa28.48■■■□□ 2.15
COL9A3-214ENST00000490398 MYOM3Q5VTT5 1437 aa28.45■■■□□ 2.15
COL9A3-214ENST00000490398 AGLP35573 1532 aa28.45■■■□□ 2.15
COL9A3-214ENST00000490398 FER1L4A9Z1Z3 1794 aa28.42■■■□□ 2.14
COL9A3-214ENST00000490398 CCDC141Q6ZP82 1450 aa28.42■■■□□ 2.14
COL9A3-214ENST00000490398 A2MP01023 1474 aa28.4■■■□□ 2.14
COL9A3-214ENST00000490398 CEBPAP49715 358 aaPredicted RBP28.39■■■□□ 2.14
COL9A3-214ENST00000490398 MIA2Q96PC5 1412 aa28.38■■■□□ 2.13
COL9A3-214ENST00000490398 PLXNC1O60486 1568 aa28.37■■■□□ 2.13
COL9A3-214ENST00000490398 RTEL1-TNFRSF6BF6WH68 1400 aa28.37■■■□□ 2.13
COL9A3-214ENST00000490398 ARHGEF5Q12774 1597 aa28.37■■■□□ 2.13
COL9A3-214ENST00000490398 RSPH4AQ5TD94 716 aa28.33■■■□□ 2.13
COL9A3-214ENST00000490398 FGD6Q6ZV73 1430 aa28.28■■■□□ 2.12
COL9A3-214ENST00000490398 DHX29Q7Z478 1369 aaKnown RBP28.28■■■□□ 2.12
COL9A3-214ENST00000490398 ADGBQ8N7X0 1667 aa28.28■■■□□ 2.12
COL9A3-214ENST00000490398 LMTK3Q96Q04 1460 aa28.27■■■□□ 2.12
COL9A3-214ENST00000490398 TSPY4P0CV99 314 aa28.27■■■□□ 2.12
COL9A3-214ENST00000490398 TSPY10P0CW01 314 aa28.27■■■□□ 2.12
COL9A3-214ENST00000490398 PTPN23Q9H3S7 1636 aa28.26■■■□□ 2.11
COL9A3-214ENST00000490398 GGT6Q6P531 493 aa28.26■■■□□ 2.11
COL9A3-214ENST00000490398 PPARGC1BQ86YN6 1023 aaKnown RBP28.23■■■□□ 2.11
COL9A3-214ENST00000490398 ABCC5O15440 1437 aa28.23■■■□□ 2.11
COL9A3-214ENST00000490398 TCOF1Q13428 1488 aaKnown RBP28.22■■■□□ 2.11
COL9A3-214ENST00000490398 MAST1Q9Y2H9 1570 aa28.22■■■□□ 2.11
COL9A3-214ENST00000490398 HSPA2P54652 639 aa28.21■■■□□ 2.11
COL9A3-214ENST00000490398 ESF1Q9H501 851 aaKnown RBP28.21■■■□□ 2.11
COL9A3-214ENST00000490398 C3P01024 1663 aa28.19■■■□□ 2.1
COL9A3-214ENST00000490398 KIF3BO15066 747 aa28.18■■■□□ 2.1
COL9A3-214ENST00000490398 CNTLNQ9NXG0 1405 aa28.18■■■□□ 2.1
COL9A3-214ENST00000490398 ZMYM3Q14202 1370 aa28.15■■■□□ 2.1
COL9A3-214ENST00000490398 CLTCQ00610 1675 aaKnown RBP28.15■■■□□ 2.1
COL9A3-214ENST00000490398 DAPK1P53355 1430 aa28.15■■■□□ 2.1
COL9A3-214ENST00000490398 DNMT1P26358 1616 aaKnown RBP28.11■■■□□ 2.09
COL9A3-214ENST00000490398 CROCC2H7BZ55 1655 aa28.1■■■□□ 2.09
COL9A3-214ENST00000490398 SHANK2Q9UPX8 1470 aa28.1■■■□□ 2.09
COL9A3-214ENST00000490398 FAM50AQ14320 339 aaKnown RBP28.1■■■□□ 2.09
COL9A3-214ENST00000490398 CHIC2Q9UKJ5 165 aa28.1■■■□□ 2.09
COL9A3-214ENST00000490398 MROH2AA6NES4 1674 aa28.09■■■□□ 2.09
COL9A3-214ENST00000490398 RRP7BPQ9NSQ0 103 aa28.08■■■□□ 2.09
COL9A3-214ENST00000490398 PREX1Q8TCU6 1659 aa28.07■■■□□ 2.08
COL9A3-214ENST00000490398 PPP6R1Q9UPN7 881 aa28.07■■■□□ 2.08
COL9A3-214ENST00000490398 KIF15Q9NS87 1388 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms