RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 LRRIQ1Q96JM4 1722 aa15.82■□□□□ 0.12
TMEM39A-210ENST00000490099 SCAPERQ9BY12 1400 aa15.81■□□□□ 0.12
TMEM39A-210ENST00000490099 KIF14Q15058 1648 aa15.8■□□□□ 0.12
TMEM39A-210ENST00000490099 CCDC18Q5T9S5 1454 aa15.8■□□□□ 0.12
TMEM39A-210ENST00000490099 FYCO1Q9BQS8 1478 aa15.79■□□□□ 0.12
TMEM39A-210ENST00000490099 ADAMTSL3P82987 1691 aa15.79■□□□□ 0.12
TMEM39A-210ENST00000490099 PCF11O94913 1555 aaKnown RBP15.79■□□□□ 0.12
TMEM39A-210ENST00000490099 POGZQ7Z3K3 1410 aa15.78■□□□□ 0.12
TMEM39A-210ENST00000490099 ARHGEF40Q8TER5 1519 aa15.77■□□□□ 0.11
TMEM39A-210ENST00000490099 YEATS2Q9ULM3 1422 aa15.77■□□□□ 0.11
TMEM39A-210ENST00000490099 MYO5CQ9NQX4 1742 aa15.75■□□□□ 0.11
TMEM39A-210ENST00000490099 PTPRMP28827 1452 aa15.74■□□□□ 0.11
TMEM39A-210ENST00000490099 BCORL1Q5H9F3 1711 aa15.73■□□□□ 0.11
TMEM39A-210ENST00000490099 ZFYVE16Q7Z3T8 1539 aa15.73■□□□□ 0.11
TMEM39A-210ENST00000490099 AFAP1Q8N556 730 aa15.72■□□□□ 0.11
TMEM39A-210ENST00000490099 ARID4BQ4LE39 1312 aaPredicted RBP15.71■□□□□ 0.11
TMEM39A-210ENST00000490099 ARHGAP5Q13017 1502 aa15.71■□□□□ 0.11
TMEM39A-210ENST00000490099 ATP10AO60312 1499 aa15.71■□□□□ 0.1
TMEM39A-210ENST00000490099 CDC42BPBQ9Y5S2 1711 aa15.7■□□□□ 0.1
TMEM39A-210ENST00000490099 ZNF518AQ6AHZ1 1483 aa15.7■□□□□ 0.1
TMEM39A-210ENST00000490099 KDM5CP41229 1560 aa15.7■□□□□ 0.1
TMEM39A-210ENST00000490099 HECW2Q9P2P5 1572 aa15.69■□□□□ 0.1
TMEM39A-210ENST00000490099 ARHGEF12Q9NZN5 1544 aa15.68■□□□□ 0.1
TMEM39A-210ENST00000490099 GPATCH8Q9UKJ3 1502 aaKnown RBP15.68■□□□□ 0.1
TMEM39A-210ENST00000490099 SIGLEC1Q9BZZ2 1709 aa15.68■□□□□ 0.1
TMEM39A-210ENST00000490099 MLH3Q9UHC1 1453 aa15.68■□□□□ 0.1
TMEM39A-210ENST00000490099 PREX2Q70Z35 1606 aa15.68■□□□□ 0.1
TMEM39A-210ENST00000490099 CEP162Q5TB80 1403 aa15.68■□□□□ 0.1
TMEM39A-210ENST00000490099 TRAPPC8Q9Y2L5 1435 aa15.67■□□□□ 0.1
TMEM39A-210ENST00000490099 MADDQ8WXG6 1647 aa15.66■□□□□ 0.1
TMEM39A-210ENST00000490099 C9orf84Q5VXU9 1444 aa15.66■□□□□ 0.1
TMEM39A-210ENST00000490099 ABCC1P33527 1531 aa15.64■□□□□ 0.09
TMEM39A-210ENST00000490099 CDC42BPAQ5VT25 1732 aa15.64■□□□□ 0.09
TMEM39A-210ENST00000490099 KIAA1107Q9UPP5 1409 aa15.63■□□□□ 0.09
TMEM39A-210ENST00000490099 LOC105371045A0A1W2PR82 267 aa15.63■□□□□ 0.09
TMEM39A-210ENST00000490099 REREQ9P2R6 1566 aa15.62■□□□□ 0.09
TMEM39A-210ENST00000490099 MTUS2Q5JR59 1369 aa15.61■□□□□ 0.09
TMEM39A-210ENST00000490099 PPP4R3CPQ6ZMV5 832 aa15.6■□□□□ 0.09
TMEM39A-210ENST00000490099 DIP2CQ9Y2E4 1556 aa15.59■□□□□ 0.09
TMEM39A-210ENST00000490099 CFDP1Q9UEE9 299 aaPredicted RBP15.59■□□□□ 0.09
TMEM39A-210ENST00000490099 CCNB3Q8WWL7 1395 aa15.59■□□□□ 0.09
TMEM39A-210ENST00000490099 AGLP35573 1532 aa15.58■□□□□ 0.09
TMEM39A-210ENST00000490099 SAMD9LQ8IVG5 1584 aa15.58■□□□□ 0.09
TMEM39A-210ENST00000490099 ITSN2Q9NZM3 1697 aa15.58■□□□□ 0.08
TMEM39A-210ENST00000490099 MLECQ14165 292 aa15.58■□□□□ 0.08
TMEM39A-210ENST00000490099 PLEKHH2Q8IVE3 1493 aa15.58■□□□□ 0.08
TMEM39A-210ENST00000490099 LMTK3Q96Q04 1460 aa15.58■□□□□ 0.08
TMEM39A-210ENST00000490099 RIMS1Q86UR5 1692 aaKnown RBP15.57■□□□□ 0.08
TMEM39A-210ENST00000490099 HNRNPMP52272 730 aaKnown RBP eCLIP15.57■□□□□ 0.088e-7■■■□□ 16.7
TMEM39A-210ENST00000490099 ZNF777Q9ULD5 760 aaPredicted RBP15.56■□□□□ 0.08
TMEM39A-210ENST00000490099 KIDINS220Q9ULH0 1771 aa15.56■□□□□ 0.08
TMEM39A-210ENST00000490099 ABCA6Q8N139 1617 aa15.55■□□□□ 0.08
TMEM39A-210ENST00000490099 EHBP1L1Q8N3D4 1523 aa15.55■□□□□ 0.08
TMEM39A-210ENST00000490099 SPAG9O60271 1321 aaKnown RBP15.54■□□□□ 0.08
TMEM39A-210ENST00000490099 MBD5Q9P267 1494 aa15.53■□□□□ 0.08
TMEM39A-210ENST00000490099 VPS8Q8N3P4 1428 aa15.53■□□□□ 0.08
TMEM39A-210ENST00000490099 ZNF644Q9H582 1327 aaPredicted RBP15.53■□□□□ 0.08
TMEM39A-210ENST00000490099 SYCP2Q9BX26 1530 aa15.53■□□□□ 0.08
TMEM39A-210ENST00000490099 MYT1LQ9UL68 1186 aa15.52■□□□□ 0.08
TMEM39A-210ENST00000490099 TIAM1Q13009 1591 aa15.52■□□□□ 0.07
TMEM39A-210ENST00000490099 FER1L4A9Z1Z3 1794 aa15.51■□□□□ 0.07
TMEM39A-210ENST00000490099 MAP3K1Q13233 1512 aa15.49■□□□□ 0.07
TMEM39A-210ENST00000490099 NCOA2Q15596 1464 aa15.49■□□□□ 0.07
TMEM39A-210ENST00000490099 CEBPAP49715 358 aaPredicted RBP15.49■□□□□ 0.07
TMEM39A-210ENST00000490099 SETD1BQ9UPS6 1966 aaKnown RBP15.47■□□□□ 0.07
TMEM39A-210ENST00000490099 RTEL1-TNFRSF6BF6WH68 1400 aa15.47■□□□□ 0.07
TMEM39A-210ENST00000490099 RSPH4AQ5TD94 716 aa15.47■□□□□ 0.07
TMEM39A-210ENST00000490099 INO80Q9ULG1 1556 aaPredicted RBP15.47■□□□□ 0.07
TMEM39A-210ENST00000490099 ATP7AQ04656 1500 aa15.47■□□□□ 0.07
TMEM39A-210ENST00000490099 LRRC9Q6ZRR7 1453 aa15.46■□□□□ 0.07
TMEM39A-210ENST00000490099 HSPA2P54652 639 aa15.46■□□□□ 0.07
TMEM39A-210ENST00000490099 ILDR1Q86SU0 546 aaPredicted RBP15.46■□□□□ 0.07
TMEM39A-210ENST00000490099 PLXNC1O60486 1568 aa15.45■□□□□ 0.06
TMEM39A-210ENST00000490099 CNTLNQ9NXG0 1405 aa15.45■□□□□ 0.06
TMEM39A-210ENST00000490099 KANK4Q5T7N3 995 aaPredicted RBP15.45■□□□□ 0.06
TMEM39A-210ENST00000490099 A2MP01023 1474 aa15.45■□□□□ 0.06
TMEM39A-210ENST00000490099 SUPT6HQ7KZ85 1726 aaKnown RBP15.43■□□□□ 0.06
TMEM39A-210ENST00000490099 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
TMEM39A-210ENST00000490099 ZMYM3Q14202 1370 aa15.4■□□□□ 0.06
TMEM39A-210ENST00000490099 DHX29Q7Z478 1369 aaKnown RBP15.4■□□□□ 0.06
TMEM39A-210ENST00000490099 ESF1Q9H501 851 aaKnown RBP15.4■□□□□ 0.06
TMEM39A-210ENST00000490099 CAMSAP2Q08AD1 1489 aa15.4■□□□□ 0.06
TMEM39A-210ENST00000490099 C3P01024 1663 aa15.39■□□□□ 0.05
TMEM39A-210ENST00000490099 NPATQ14207 1427 aa15.39■□□□□ 0.05
TMEM39A-210ENST00000490099 CCDC141Q6ZP82 1450 aa15.39■□□□□ 0.05
TMEM39A-210ENST00000490099 PREX1Q8TCU6 1659 aa15.38■□□□□ 0.05
TMEM39A-210ENST00000490099 ARHGEF5Q12774 1597 aa15.37■□□□□ 0.05
TMEM39A-210ENST00000490099 UHRF1BP1Q6BDS2 1440 aa15.37■□□□□ 0.05
TMEM39A-210ENST00000490099 MIA2Q96PC5 1412 aa15.37■□□□□ 0.05
TMEM39A-210ENST00000490099 MROH2AA6NES4 1674 aa15.36■□□□□ 0.05
TMEM39A-210ENST00000490099 ADGBQ8N7X0 1667 aa15.36■□□□□ 0.05
TMEM39A-210ENST00000490099 GGT6Q6P531 493 aa15.35■□□□□ 0.05
TMEM39A-210ENST00000490099 MYOM3Q5VTT5 1437 aa15.34■□□□□ 0.05
TMEM39A-210ENST00000490099 MAPK8IP2Q13387 824 aaPredicted RBP15.34■□□□□ 0.05
TMEM39A-210ENST00000490099 PTPRKQ15262 1439 aa15.34■□□□□ 0.05
TMEM39A-210ENST00000490099 TSPY4P0CV99 314 aa15.33■□□□□ 0.04
TMEM39A-210ENST00000490099 TSPY10P0CW01 314 aa15.33■□□□□ 0.04
TMEM39A-210ENST00000490099 FBXO41Q8TF61 875 aa15.32■□□□□ 0.04
TMEM39A-210ENST00000490099 DMRT2Q9Y5R5 561 aa15.32■□□□□ 0.04
TMEM39A-210ENST00000490099 STRCQ7RTU9 1775 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms