RNA–Protein interactions for RNA: ENST00000490035.6

LSAMP-205, Transcript of limbic system associated membrane protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSAMP, Length 9,446 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-205ENST00000490035 CHMP4CQ96CF2 233 aa11.22□□□□□ -0.61
LSAMP-205ENST00000490035 RTF1Q92541 710 aaKnown RBP11.21□□□□□ -0.62
LSAMP-205ENST00000490035 A0A0G2JS52 829 aa11.2□□□□□ -0.62
LSAMP-205ENST00000490035 KIAA1211Q6ZU35 1233 aa11.2□□□□□ -0.62
LSAMP-205ENST00000490035 PMFBP1Q8TBY8 1022 aa11.2□□□□□ -0.62
LSAMP-205ENST00000490035 NAP1L5Q96NT1 182 aaPredicted RBP11.2□□□□□ -0.62
LSAMP-205ENST00000490035 CCDC18Q5T9S5 1454 aa11.2□□□□□ -0.62
LSAMP-205ENST00000490035 KIAA2012Q0VF49 1180 aa11.2□□□□□ -0.62
LSAMP-205ENST00000490035 HDGFL2Q7Z4V5 671 aaPredicted RBP11.2□□□□□ -0.62
LSAMP-205ENST00000490035 TCERG1O14776 1098 aaKnown RBP11.2□□□□□ -0.62
LSAMP-205ENST00000490035 TOP2AP11388 1531 aaKnown RBP11.2□□□□□ -0.62
LSAMP-205ENST00000490035 LAS1LQ9Y4W2 734 aaKnown RBP11.19□□□□□ -0.62
LSAMP-205ENST00000490035 ZBTB7CA1YPR0 619 aa11.19□□□□□ -0.62
LSAMP-205ENST00000490035 ABCC8Q09428 1581 aa11.19□□□□□ -0.62
LSAMP-205ENST00000490035 ANKRD30AQ9BXX3 1397 aa11.19□□□□□ -0.62
LSAMP-205ENST00000490035 FRAT1Q92837 279 aaPredicted RBP11.18□□□□□ -0.62
LSAMP-205ENST00000490035 NPHP1O15259 732 aa11.18□□□□□ -0.62
LSAMP-205ENST00000490035 TPM4P67936 248 aa11.18□□□□□ -0.62
LSAMP-205ENST00000490035 GPATCH3Q96I76 525 aa11.18□□□□□ -0.62
LSAMP-205ENST00000490035 RWDD1Q9H446 243 aaPredicted RBP11.18□□□□□ -0.62
LSAMP-205ENST00000490035 PDE3BQ13370 1112 aa11.18□□□□□ -0.62
LSAMP-205ENST00000490035 MORC1Q86VD1 984 aa11.17□□□□□ -0.62
LSAMP-205ENST00000490035 DCAF11Q8TEB1 546 aa11.17□□□□□ -0.62
LSAMP-205ENST00000490035 HIRIP3Q9BW71 556 aaPredicted RBP11.17□□□□□ -0.62
LSAMP-205ENST00000490035 UACAQ9BZF9 1416 aa11.17□□□□□ -0.62
LSAMP-205ENST00000490035 U2SURPO15042 1029 aaKnown RBP11.17□□□□□ -0.62
LSAMP-205ENST00000490035 PHF14O94880 888 aa11.16□□□□□ -0.62
LSAMP-205ENST00000490035 LMOD3Q0VAK6 560 aa11.16□□□□□ -0.62
LSAMP-205ENST00000490035 SPAG9O60271 1321 aaKnown RBP11.15□□□□□ -0.62
LSAMP-205ENST00000490035 RGS3P49796 1198 aa11.15□□□□□ -0.62
LSAMP-205ENST00000490035 KIF3AQ9Y496 699 aa11.14□□□□□ -0.63
LSAMP-205ENST00000490035 HMMRO75330 724 aa11.14□□□□□ -0.63
LSAMP-205ENST00000490035 NGEFQ8N5V2 710 aa11.14□□□□□ -0.63
LSAMP-205ENST00000490035 SRPK2P78362 688 aaKnown RBP11.13□□□□□ -0.63
LSAMP-205ENST00000490035 GNL2Q13823 731 aaKnown RBP11.13□□□□□ -0.63
LSAMP-205ENST00000490035 CC2D1BQ5T0F9 858 aaKnown RBP11.13□□□□□ -0.63
LSAMP-205ENST00000490035 DRC7Q8IY82 874 aa11.13□□□□□ -0.63
LSAMP-205ENST00000490035 PLCB2Q00722 1185 aa11.12□□□□□ -0.63
LSAMP-205ENST00000490035 NEUROD2Q15784 382 aa11.12□□□□□ -0.63
LSAMP-205ENST00000490035 TERF2IPQ9NYB0 399 aa11.11□□□□□ -0.63
LSAMP-205ENST00000490035 RCAN3Q9UKA8 241 aa11.11□□□□□ -0.63
LSAMP-205ENST00000490035 CCDC88BA6NC98 1476 aa11.1□□□□□ -0.63
LSAMP-205ENST00000490035 EFCAB2Q5VUJ9 269 aa11.09□□□□□ -0.63
LSAMP-205ENST00000490035 TMX4Q9H1E5 349 aaPredicted RBP11.08□□□□□ -0.63
LSAMP-205ENST00000490035 NAP1L2Q9ULW6 460 aaPredicted RBP11.08□□□□□ -0.64
LSAMP-205ENST00000490035 RAPGEF2Q9Y4G8 1499 aa11.07□□□□□ -0.64
LSAMP-205ENST00000490035 SOGA1O94964 1423 aa11.07□□□□□ -0.64
LSAMP-205ENST00000490035 WIZO95785 1651 aa11.07□□□□□ -0.64
LSAMP-205ENST00000490035 KIF15Q9NS87 1388 aa11.07□□□□□ -0.64
LSAMP-205ENST00000490035 STK31Q9BXU1 1019 aa11.07□□□□□ -0.64
LSAMP-205ENST00000490035 SIN3AQ96ST3 1273 aa11.06□□□□□ -0.64
LSAMP-205ENST00000490035 LRRFIP1Q32MZ4 808 aaKnown RBP11.06□□□□□ -0.64
LSAMP-205ENST00000490035 CUX1P39880 1505 aa11.06□□□□□ -0.64
LSAMP-205ENST00000490035 NLRP13Q86W25 1043 aa11.06□□□□□ -0.64
LSAMP-205ENST00000490035 B4GALNT3Q6L9W6 998 aa11.06□□□□□ -0.64
LSAMP-205ENST00000490035 STAC3Q96MF2 364 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 RAB3GAP2Q9H2M9 1393 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 LMOD2Q6P5Q4 547 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 GOLGA6L1Q8N7Z2 621 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 ATP6V1DQ9Y5K8 247 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 ST18O60284 1047 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 MPHOSPH9Q99550 1183 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 NUP155O75694 1391 aa11.05□□□□□ -0.64
LSAMP-205ENST00000490035 SMARCA4P51532 1647 aa11.04□□□□□ -0.64
LSAMP-205ENST00000490035 PKD2Q13563 968 aa11.04□□□□□ -0.64
LSAMP-205ENST00000490035 DDX11L8A8MPP1 907 aa11.04□□□□□ -0.64
LSAMP-205ENST00000490035 HSPA5P11021 654 aaKnown RBP11.04□□□□□ -0.64
LSAMP-205ENST00000490035 AAMPQ13685 434 aa11.04□□□□□ -0.64
LSAMP-205ENST00000490035 SKOR2Q2VWA4 1001 aaPredicted RBP11.03□□□□□ -0.64
LSAMP-205ENST00000490035 ANO8Q9HCE9 1232 aaPredicted RBP11.03□□□□□ -0.64
LSAMP-205ENST00000490035 MROH2BQ7Z745 1585 aa11.03□□□□□ -0.64
LSAMP-205ENST00000490035 RBM19Q9Y4C8 960 aaKnown RBP11.01□□□□□ -0.65
LSAMP-205ENST00000490035 EID1Q9Y6B2 187 aa11.01□□□□□ -0.65
LSAMP-205ENST00000490035 ROCK1Q13464 1354 aa11.01□□□□□ -0.65
LSAMP-205ENST00000490035 U2AF1L5P0DN76 240 aaPredicted RBP11□□□□□ -0.65
LSAMP-205ENST00000490035 U2AF1Q01081 240 aaKnown RBP eCLIP11□□□□□ -0.65
LSAMP-205ENST00000490035 GOLGA6L3A6NEY3 463 aa11□□□□□ -0.65
LSAMP-205ENST00000490035 ITPRIPQ8IWB1 547 aa11□□□□□ -0.65
LSAMP-205ENST00000490035 NOC3LQ8WTT2 800 aaKnown RBP11□□□□□ -0.65
LSAMP-205ENST00000490035 CECR2Q9BXF3 1484 aa11□□□□□ -0.65
LSAMP-205ENST00000490035 IPO9Q96P70 1041 aaKnown RBP11□□□□□ -0.65
LSAMP-205ENST00000490035 DEKP35659 375 aaKnown RBP10.99□□□□□ -0.65
LSAMP-205ENST00000490035 CENPQQ7L2Z9 268 aaPredicted RBP10.99□□□□□ -0.65
LSAMP-205ENST00000490035 CENPJQ9HC77 1338 aaPredicted RBP10.99□□□□□ -0.65
LSAMP-205ENST00000490035 WWC1Q8IX03 1113 aa10.98□□□□□ -0.65
LSAMP-205ENST00000490035 CCDC144AA2RUR9 1427 aa10.98□□□□□ -0.65
LSAMP-205ENST00000490035 KIF16BQ96L93 1317 aa10.98□□□□□ -0.65
LSAMP-205ENST00000490035 MYBBP1AQ9BQG0 1328 aaKnown RBP10.98□□□□□ -0.65
LSAMP-205ENST00000490035 SMC4Q9NTJ3 1288 aa10.98□□□□□ -0.65
LSAMP-205ENST00000490035 GORABQ5T7V8 394 aa10.98□□□□□ -0.65
LSAMP-205ENST00000490035 PRDM2Q13029 1718 aa10.97□□□□□ -0.65
LSAMP-205ENST00000490035 TAF7LQ5H9L4 462 aa10.95□□□□□ -0.66
LSAMP-205ENST00000490035 TSR1Q2NL82 804 aaKnown RBP10.95□□□□□ -0.66
LSAMP-205ENST00000490035 TPM3P06753 285 aa10.95□□□□□ -0.66
LSAMP-205ENST00000490035 CGNL1Q0VF96 1302 aa10.95□□□□□ -0.66
LSAMP-205ENST00000490035 CCDC70Q6NSX1 233 aa10.95□□□□□ -0.66
LSAMP-205ENST00000490035 E9PSI1 815 aa10.94□□□□□ -0.66
LSAMP-205ENST00000490035 GPS2Q13227 327 aa10.94□□□□□ -0.66
LSAMP-205ENST00000490035 TPRNQ4KMQ1 711 aa10.94□□□□□ -0.66
LSAMP-205ENST00000490035 TPM2P07951 284 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms