RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 YEATS2Q9ULM3 1422 aa19.97■□□□□ 0.79
SDC3-204ENST00000487984 MYO5CQ9NQX4 1742 aa19.96■□□□□ 0.79
SDC3-204ENST00000487984 HECW2Q9P2P5 1572 aa19.96■□□□□ 0.79
SDC3-204ENST00000487984 FYCO1Q9BQS8 1478 aa19.96■□□□□ 0.79
SDC3-204ENST00000487984 ZFYVE16Q7Z3T8 1539 aa19.96■□□□□ 0.79
SDC3-204ENST00000487984 MAGI2Q86UL8 1455 aa19.95■□□□□ 0.78
SDC3-204ENST00000487984 PTPRMP28827 1452 aa19.94■□□□□ 0.78
SDC3-204ENST00000487984 BCORL1Q5H9F3 1711 aa19.94■□□□□ 0.78
SDC3-204ENST00000487984 ARHGAP5Q13017 1502 aa19.94■□□□□ 0.78
SDC3-204ENST00000487984 MADDQ8WXG6 1647 aa19.91■□□□□ 0.78
SDC3-204ENST00000487984 ZNF518AQ6AHZ1 1483 aa19.88■□□□□ 0.77
SDC3-204ENST00000487984 SIGLEC1Q9BZZ2 1709 aa19.88■□□□□ 0.77
SDC3-204ENST00000487984 AFAP1Q8N556 730 aa19.87■□□□□ 0.77
SDC3-204ENST00000487984 PREX2Q70Z35 1606 aa19.85■□□□□ 0.77
SDC3-204ENST00000487984 ATP10AO60312 1499 aa19.85■□□□□ 0.77
SDC3-204ENST00000487984 CDC42BPBQ9Y5S2 1711 aa19.85■□□□□ 0.77
SDC3-204ENST00000487984 KDM5CP41229 1560 aa19.84■□□□□ 0.77
SDC3-204ENST00000487984 C9orf84Q5VXU9 1444 aa19.84■□□□□ 0.77
SDC3-204ENST00000487984 CEP162Q5TB80 1403 aa19.83■□□□□ 0.76
SDC3-204ENST00000487984 MLECQ14165 292 aa19.82■□□□□ 0.76
SDC3-204ENST00000487984 ABCC1P33527 1531 aa19.81■□□□□ 0.76
SDC3-204ENST00000487984 ARHGEF12Q9NZN5 1544 aa19.81■□□□□ 0.76
SDC3-204ENST00000487984 RIMS1Q86UR5 1692 aaKnown RBP19.81■□□□□ 0.76
SDC3-204ENST00000487984 TRAPPC8Q9Y2L5 1435 aa19.8■□□□□ 0.76
SDC3-204ENST00000487984 GPATCH8Q9UKJ3 1502 aaKnown RBP19.78■□□□□ 0.76
SDC3-204ENST00000487984 MYT1LQ9UL68 1186 aa19.78■□□□□ 0.76
SDC3-204ENST00000487984 CDC42BPAQ5VT25 1732 aa19.78■□□□□ 0.76
SDC3-204ENST00000487984 MLH3Q9UHC1 1453 aa19.77■□□□□ 0.76
SDC3-204ENST00000487984 DIP2CQ9Y2E4 1556 aa19.76■□□□□ 0.75
SDC3-204ENST00000487984 MTUS2Q5JR59 1369 aa19.76■□□□□ 0.75
SDC3-204ENST00000487984 ITSN2Q9NZM3 1697 aa19.75■□□□□ 0.75
SDC3-204ENST00000487984 PLPPR3Q6T4P5 718 aa19.75■□□□□ 0.75
SDC3-204ENST00000487984 ZNF777Q9ULD5 760 aaPredicted RBP19.75■□□□□ 0.75
SDC3-204ENST00000487984 LMTK3Q96Q04 1460 aa19.73■□□□□ 0.75
SDC3-204ENST00000487984 CCNB3Q8WWL7 1395 aa19.73■□□□□ 0.75
SDC3-204ENST00000487984 SAMD9LQ8IVG5 1584 aa19.73■□□□□ 0.75
SDC3-204ENST00000487984 ABCA6Q8N139 1617 aa19.73■□□□□ 0.75
SDC3-204ENST00000487984 REREQ9P2R6 1566 aa19.71■□□□□ 0.75
SDC3-204ENST00000487984 FER1L4A9Z1Z3 1794 aa19.71■□□□□ 0.75
SDC3-204ENST00000487984 CFDP1Q9UEE9 299 aaPredicted RBP19.71■□□□□ 0.75
SDC3-204ENST00000487984 SYCP2Q9BX26 1530 aa19.71■□□□□ 0.75
SDC3-204ENST00000487984 LOC105371045A0A1W2PR82 267 aa19.7■□□□□ 0.74
SDC3-204ENST00000487984 EHBP1L1Q8N3D4 1523 aa19.69■□□□□ 0.74
SDC3-204ENST00000487984 HNRNPMP52272 730 aaKnown RBP eCLIP19.68■□□□□ 0.74
SDC3-204ENST00000487984 KIAA1107Q9UPP5 1409 aa19.68■□□□□ 0.74
SDC3-204ENST00000487984 KIDINS220Q9ULH0 1771 aa19.67■□□□□ 0.74
SDC3-204ENST00000487984 PLEKHH2Q8IVE3 1493 aa19.67■□□□□ 0.74
SDC3-204ENST00000487984 ILDR1Q86SU0 546 aaPredicted RBP19.66■□□□□ 0.74
SDC3-204ENST00000487984 AGLP35573 1532 aa19.66■□□□□ 0.74
SDC3-204ENST00000487984 TIAM1Q13009 1591 aa19.66■□□□□ 0.74
SDC3-204ENST00000487984 SPAG9O60271 1321 aaKnown RBP19.65■□□□□ 0.74
SDC3-204ENST00000487984 CEBPAP49715 358 aaPredicted RBP19.64■□□□□ 0.73
SDC3-204ENST00000487984 HSPA2P54652 639 aa19.64■□□□□ 0.73
SDC3-204ENST00000487984 ZNF644Q9H582 1327 aaPredicted RBP19.62■□□□□ 0.73
SDC3-204ENST00000487984 VPS8Q8N3P4 1428 aa19.6■□□□□ 0.73
SDC3-204ENST00000487984 ATP7AQ04656 1500 aa19.6■□□□□ 0.73
SDC3-204ENST00000487984 INO80Q9ULG1 1556 aaPredicted RBP19.58■□□□□ 0.73
SDC3-204ENST00000487984 NCOA2Q15596 1464 aa19.58■□□□□ 0.72
SDC3-204ENST00000487984 MBD5Q9P267 1494 aa19.57■□□□□ 0.72
SDC3-204ENST00000487984 ESF1Q9H501 851 aaKnown RBP19.56■□□□□ 0.72
SDC3-204ENST00000487984 SUPT6HQ7KZ85 1726 aaKnown RBP19.54■□□□□ 0.72
SDC3-204ENST00000487984 A2MP01023 1474 aa19.54■□□□□ 0.72
SDC3-204ENST00000487984 PLXNC1O60486 1568 aa19.53■□□□□ 0.72
SDC3-204ENST00000487984 PREX1Q8TCU6 1659 aa19.53■□□□□ 0.72
SDC3-204ENST00000487984 CNTLNQ9NXG0 1405 aa19.53■□□□□ 0.72
SDC3-204ENST00000487984 LRRC9Q6ZRR7 1453 aa19.52■□□□□ 0.72
SDC3-204ENST00000487984 UHRF1BP1Q6BDS2 1440 aa19.51■□□□□ 0.71
SDC3-204ENST00000487984 CAMSAP2Q08AD1 1489 aa19.51■□□□□ 0.71
SDC3-204ENST00000487984 C3P01024 1663 aa19.51■□□□□ 0.71
SDC3-204ENST00000487984 RTEL1-TNFRSF6BF6WH68 1400 aa19.5■□□□□ 0.71
SDC3-204ENST00000487984 CCDC141Q6ZP82 1450 aa19.48■□□□□ 0.71
SDC3-204ENST00000487984 KANK4Q5T7N3 995 aaPredicted RBP19.47■□□□□ 0.71
SDC3-204ENST00000487984 MAP3K1Q13233 1512 aa19.46■□□□□ 0.71
SDC3-204ENST00000487984 ZMYM3Q14202 1370 aa19.45■□□□□ 0.7
SDC3-204ENST00000487984 GGT6Q6P531 493 aa19.45■□□□□ 0.7
SDC3-204ENST00000487984 ADGBQ8N7X0 1667 aa19.45■□□□□ 0.7
SDC3-204ENST00000487984 SETD1BQ9UPS6 1966 aaKnown RBP19.44■□□□□ 0.7
SDC3-204ENST00000487984 RSPH4AQ5TD94 716 aa19.44■□□□□ 0.7
SDC3-204ENST00000487984 DHX29Q7Z478 1369 aaKnown RBP19.44■□□□□ 0.7
SDC3-204ENST00000487984 MROH2AA6NES4 1674 aa19.43■□□□□ 0.7
SDC3-204ENST00000487984 FBXO41Q8TF61 875 aa19.43■□□□□ 0.7
SDC3-204ENST00000487984 NPATQ14207 1427 aa19.42■□□□□ 0.7
SDC3-204ENST00000487984 ARHGEF5Q12774 1597 aa19.4■□□□□ 0.7
SDC3-204ENST00000487984 PPP6R1Q9UPN7 881 aa19.4■□□□□ 0.7
SDC3-204ENST00000487984 CLTCQ00610 1675 aaKnown RBP19.4■□□□□ 0.7
SDC3-204ENST00000487984 MYOM3Q5VTT5 1437 aa19.38■□□□□ 0.69
SDC3-204ENST00000487984 STRCQ7RTU9 1775 aa19.37■□□□□ 0.69
SDC3-204ENST00000487984 PTPRKQ15262 1439 aa19.37■□□□□ 0.69
SDC3-204ENST00000487984 TSPY4P0CV99 314 aa19.37■□□□□ 0.69
SDC3-204ENST00000487984 TSPY10P0CW01 314 aa19.37■□□□□ 0.69
SDC3-204ENST00000487984 DMRT2Q9Y5R5 561 aa19.37■□□□□ 0.69
SDC3-204ENST00000487984 MIA2Q96PC5 1412 aa19.36■□□□□ 0.69
SDC3-204ENST00000487984 KIF3BO15066 747 aa19.36■□□□□ 0.69
SDC3-204ENST00000487984 APLP2Q06481 763 aa19.34■□□□□ 0.69
SDC3-204ENST00000487984 NCOA1Q15788 1441 aa19.34■□□□□ 0.69
SDC3-204ENST00000487984 CERKQ8TCT0 537 aa19.33■□□□□ 0.68
SDC3-204ENST00000487984 PTPRTO14522 1441 aa19.32■□□□□ 0.68
SDC3-204ENST00000487984 MAST1Q9Y2H9 1570 aa19.31■□□□□ 0.68
SDC3-204ENST00000487984 KDM5DQ9BY66 1539 aa19.3■□□□□ 0.68
SDC3-204ENST00000487984 CAMSAP1Q5T5Y3 1602 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms