RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 KIF14Q15058 1648 aa19.9■□□□□ 0.78
VPS16-208ENST00000487461 ZFYVE16Q7Z3T8 1539 aa19.89■□□□□ 0.77
VPS16-208ENST00000487461 CASKIN1Q8WXD9 1431 aa19.89■□□□□ 0.77
VPS16-208ENST00000487461 MADDQ8WXG6 1647 aa19.88■□□□□ 0.77
VPS16-208ENST00000487461 CLIP1P30622 1438 aa19.88■□□□□ 0.77
VPS16-208ENST00000487461 LRRIQ1Q96JM4 1722 aa19.88■□□□□ 0.77
VPS16-208ENST00000487461 MLECQ14165 292 aa19.87■□□□□ 0.77
VPS16-208ENST00000487461 AFAP1Q8N556 730 aa19.87■□□□□ 0.77
VPS16-208ENST00000487461 MYO5CQ9NQX4 1742 aa19.85■□□□□ 0.77
VPS16-208ENST00000487461 PLPPR3Q6T4P5 718 aa19.84■□□□□ 0.77
VPS16-208ENST00000487461 SIGLEC1Q9BZZ2 1709 aa19.84■□□□□ 0.77
VPS16-208ENST00000487461 ARHGAP5Q13017 1502 aa19.83■□□□□ 0.77
VPS16-208ENST00000487461 ATP10AO60312 1499 aa19.83■□□□□ 0.76
VPS16-208ENST00000487461 PCF11O94913 1555 aaKnown RBP19.83■□□□□ 0.76
VPS16-208ENST00000487461 CCDC18Q5T9S5 1454 aa19.82■□□□□ 0.76
VPS16-208ENST00000487461 RIMS1Q86UR5 1692 aaKnown RBP19.81■□□□□ 0.76
VPS16-208ENST00000487461 ZNF518AQ6AHZ1 1483 aa19.79■□□□□ 0.76
VPS16-208ENST00000487461 C9orf84Q5VXU9 1444 aa19.78■□□□□ 0.76
VPS16-208ENST00000487461 MYT1LQ9UL68 1186 aa19.78■□□□□ 0.76
VPS16-208ENST00000487461 LMTK3Q96Q04 1460 aa19.77■□□□□ 0.76
VPS16-208ENST00000487461 FYCO1Q9BQS8 1478 aa19.77■□□□□ 0.76
VPS16-208ENST00000487461 CDC42BPBQ9Y5S2 1711 aa19.76■□□□□ 0.75
VPS16-208ENST00000487461 ARHGEF12Q9NZN5 1544 aa19.75■□□□□ 0.75
VPS16-208ENST00000487461 TRAPPC8Q9Y2L5 1435 aa19.75■□□□□ 0.75
VPS16-208ENST00000487461 KDM5CP41229 1560 aa19.74■□□□□ 0.75
VPS16-208ENST00000487461 HSPA2P54652 639 aa19.74■□□□□ 0.75
VPS16-208ENST00000487461 ZNF777Q9ULD5 760 aaPredicted RBP19.72■□□□□ 0.75
VPS16-208ENST00000487461 CEBPAP49715 358 aaPredicted RBP19.71■□□□□ 0.75
VPS16-208ENST00000487461 PREX2Q70Z35 1606 aa19.71■□□□□ 0.75
VPS16-208ENST00000487461 MLH3Q9UHC1 1453 aa19.71■□□□□ 0.75
VPS16-208ENST00000487461 ABCC1P33527 1531 aa19.68■□□□□ 0.74
VPS16-208ENST00000487461 GPATCH8Q9UKJ3 1502 aaKnown RBP19.68■□□□□ 0.74
VPS16-208ENST00000487461 FBXO41Q8TF61 875 aa19.68■□□□□ 0.74
VPS16-208ENST00000487461 FER1L4A9Z1Z3 1794 aa19.67■□□□□ 0.74
VPS16-208ENST00000487461 DIP2CQ9Y2E4 1556 aa19.67■□□□□ 0.74
VPS16-208ENST00000487461 HNRNPMP52272 730 aaKnown RBP eCLIP19.67■□□□□ 0.74
VPS16-208ENST00000487461 CDC42BPAQ5VT25 1732 aa19.66■□□□□ 0.74
VPS16-208ENST00000487461 CFDP1Q9UEE9 299 aaPredicted RBP19.65■□□□□ 0.74
VPS16-208ENST00000487461 ITSN2Q9NZM3 1697 aa19.63■□□□□ 0.73
VPS16-208ENST00000487461 ABCA6Q8N139 1617 aa19.63■□□□□ 0.73
VPS16-208ENST00000487461 REREQ9P2R6 1566 aa19.62■□□□□ 0.73
VPS16-208ENST00000487461 MTUS2Q5JR59 1369 aa19.62■□□□□ 0.73
VPS16-208ENST00000487461 CCNB3Q8WWL7 1395 aa19.61■□□□□ 0.73
VPS16-208ENST00000487461 SAMD9LQ8IVG5 1584 aa19.61■□□□□ 0.73
VPS16-208ENST00000487461 SPAG9O60271 1321 aaKnown RBP19.6■□□□□ 0.73
VPS16-208ENST00000487461 AGLP35573 1532 aa19.6■□□□□ 0.73
VPS16-208ENST00000487461 KIDINS220Q9ULH0 1771 aa19.6■□□□□ 0.73
VPS16-208ENST00000487461 CEP162Q5TB80 1403 aa19.59■□□□□ 0.73
VPS16-208ENST00000487461 KIAA1107Q9UPP5 1409 aa19.59■□□□□ 0.73
VPS16-208ENST00000487461 ESF1Q9H501 851 aaKnown RBP19.58■□□□□ 0.72
VPS16-208ENST00000487461 ZNF644Q9H582 1327 aaPredicted RBP19.57■□□□□ 0.72
VPS16-208ENST00000487461 SYCP2Q9BX26 1530 aa19.57■□□□□ 0.72
VPS16-208ENST00000487461 LOC105371045A0A1W2PR82 267 aa19.55■□□□□ 0.72
VPS16-208ENST00000487461 PLEKHH2Q8IVE3 1493 aa19.54■□□□□ 0.72
VPS16-208ENST00000487461 SETD1BQ9UPS6 1966 aaKnown RBP19.52■□□□□ 0.72
VPS16-208ENST00000487461 UHRF1BP1Q6BDS2 1440 aa19.51■□□□□ 0.71
VPS16-208ENST00000487461 PREX1Q8TCU6 1659 aa19.51■□□□□ 0.71
VPS16-208ENST00000487461 EHBP1L1Q8N3D4 1523 aa19.49■□□□□ 0.71
VPS16-208ENST00000487461 CNTLNQ9NXG0 1405 aa19.49■□□□□ 0.71
VPS16-208ENST00000487461 TIAM1Q13009 1591 aa19.49■□□□□ 0.71
VPS16-208ENST00000487461 ATP7AQ04656 1500 aa19.48■□□□□ 0.71
VPS16-208ENST00000487461 C3P01024 1663 aa19.48■□□□□ 0.71
VPS16-208ENST00000487461 MBD5Q9P267 1494 aa19.48■□□□□ 0.71
VPS16-208ENST00000487461 ZMYM3Q14202 1370 aa19.47■□□□□ 0.71
VPS16-208ENST00000487461 CERKQ8TCT0 537 aa19.47■□□□□ 0.71
VPS16-208ENST00000487461 A2MP01023 1474 aa19.47■□□□□ 0.71
VPS16-208ENST00000487461 GGT6Q6P531 493 aa19.46■□□□□ 0.71
VPS16-208ENST00000487461 DMRT2Q9Y5R5 561 aa19.46■□□□□ 0.71
VPS16-208ENST00000487461 INO80Q9ULG1 1556 aaPredicted RBP19.44■□□□□ 0.7
VPS16-208ENST00000487461 SUPT6HQ7KZ85 1726 aaKnown RBP19.44■□□□□ 0.7
VPS16-208ENST00000487461 NCOA2Q15596 1464 aa19.42■□□□□ 0.7
VPS16-208ENST00000487461 STRCQ7RTU9 1775 aa19.42■□□□□ 0.7
VPS16-208ENST00000487461 PLXNC1O60486 1568 aa19.42■□□□□ 0.7
VPS16-208ENST00000487461 RTEL1-TNFRSF6BF6WH68 1400 aa19.41■□□□□ 0.7
VPS16-208ENST00000487461 PPP6R1Q9UPN7 881 aa19.4■□□□□ 0.7
VPS16-208ENST00000487461 RSPH4AQ5TD94 716 aa19.39■□□□□ 0.69
VPS16-208ENST00000487461 NPATQ14207 1427 aa19.39■□□□□ 0.69
VPS16-208ENST00000487461 DHX29Q7Z478 1369 aaKnown RBP19.38■□□□□ 0.69
VPS16-208ENST00000487461 VPS8Q8N3P4 1428 aa19.38■□□□□ 0.69
VPS16-208ENST00000487461 MROH2AA6NES4 1674 aa19.36■□□□□ 0.69
VPS16-208ENST00000487461 PTPRTO14522 1441 aa19.36■□□□□ 0.69
VPS16-208ENST00000487461 KANK4Q5T7N3 995 aaPredicted RBP19.36■□□□□ 0.69
VPS16-208ENST00000487461 CAMSAP2Q08AD1 1489 aa19.35■□□□□ 0.69
VPS16-208ENST00000487461 LRRC9Q6ZRR7 1453 aa19.35■□□□□ 0.69
VPS16-208ENST00000487461 PTPRKQ15262 1439 aa19.34■□□□□ 0.69
VPS16-208ENST00000487461 CLTCQ00610 1675 aaKnown RBP19.34■□□□□ 0.69
VPS16-208ENST00000487461 ADGBQ8N7X0 1667 aa19.34■□□□□ 0.69
VPS16-208ENST00000487461 KIF3BO15066 747 aa19.34■□□□□ 0.69
VPS16-208ENST00000487461 CCDC141Q6ZP82 1450 aa19.34■□□□□ 0.69
VPS16-208ENST00000487461 NCOA1Q15788 1441 aa19.34■□□□□ 0.69
VPS16-208ENST00000487461 TSPY4P0CV99 314 aa19.32■□□□□ 0.68
VPS16-208ENST00000487461 TSPY10P0CW01 314 aa19.32■□□□□ 0.68
VPS16-208ENST00000487461 NCKAP5LQ9HCH0 1330 aa19.31■□□□□ 0.68
VPS16-208ENST00000487461 CAMSAP1Q5T5Y3 1602 aa19.29■□□□□ 0.68
VPS16-208ENST00000487461 FBXO31Q5XUX0 539 aaPredicted RBP19.28■□□□□ 0.68
VPS16-208ENST00000487461 MAP3K1Q13233 1512 aa19.26■□□□□ 0.67
VPS16-208ENST00000487461 ARHGEF5Q12774 1597 aa19.26■□□□□ 0.67
VPS16-208ENST00000487461 WASHC2CQ9Y4E1 1318 aa19.25■□□□□ 0.67
VPS16-208ENST00000487461 PKD2Q13563 968 aa19.24■□□□□ 0.67
VPS16-208ENST00000487461 LTBP4Q8N2S1 1624 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms