RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 PBRM1Q86U86 1689 aa16.81■□□□□ 0.28
COL3A1-206ENST00000487010 BCL11AQ9H165 835 aa16.8■□□□□ 0.28
COL3A1-206ENST00000487010 CDK13Q14004 1512 aaKnown RBP16.79■□□□□ 0.28
COL3A1-206ENST00000487010 IQGAP2Q13576 1575 aa16.79■□□□□ 0.28
COL3A1-206ENST00000487010 RPRD2Q5VT52 1461 aaKnown RBP16.78■□□□□ 0.28
COL3A1-206ENST00000487010 FOXD1Q16676 465 aa16.78■□□□□ 0.28
COL3A1-206ENST00000487010 ANKRD30BQ9BXX2 1392 aa16.78■□□□□ 0.28
COL3A1-206ENST00000487010 POLR1AO95602 1720 aaPredicted RBP16.78■□□□□ 0.28
COL3A1-206ENST00000487010 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.28
COL3A1-206ENST00000487010 WDR62O43379 1518 aa16.77■□□□□ 0.28
COL3A1-206ENST00000487010 NBPF8Q3BBV2 869 aa16.77■□□□□ 0.27
COL3A1-206ENST00000487010 FAM9BQ8IZU0 186 aa16.77■□□□□ 0.27
COL3A1-206ENST00000487010 MRS2Q9HD23 443 aa16.77■□□□□ 0.27
COL3A1-206ENST00000487010 ROCK1Q13464 1354 aa16.77■□□□□ 0.27
COL3A1-206ENST00000487010 TEX14Q8IWB6 1497 aa16.76■□□□□ 0.27
COL3A1-206ENST00000487010 DAPK1P53355 1430 aa16.75■□□□□ 0.27
COL3A1-206ENST00000487010 SPATA31E1Q6ZUB1 1445 aa16.75■□□□□ 0.27
COL3A1-206ENST00000487010 ADAMTS12P58397 1594 aa16.74■□□□□ 0.27
COL3A1-206ENST00000487010 KIF7Q2M1P5 1343 aa16.73■□□□□ 0.27
COL3A1-206ENST00000487010 DNMT1P26358 1616 aaKnown RBP16.72■□□□□ 0.27
COL3A1-206ENST00000487010 DNAJC5BQ9UF47 199 aa16.71■□□□□ 0.27
COL3A1-206ENST00000487010 ABCC5O15440 1437 aa16.71■□□□□ 0.27
COL3A1-206ENST00000487010 ERICH6Q7L0X2 663 aa16.7■□□□□ 0.26
COL3A1-206ENST00000487010 ARID3CA6NKF2 412 aa16.69■□□□□ 0.26
COL3A1-206ENST00000487010 B4GALNT3Q6L9W6 998 aa16.68■□□□□ 0.26
COL3A1-206ENST00000487010 SLC4A1APQ9BWU0 796 aaKnown RBP16.68■□□□□ 0.26
COL3A1-206ENST00000487010 ZNF644Q9H582 1327 aaPredicted RBP16.64■□□□□ 0.26
COL3A1-206ENST00000487010 SMG6Q86US8 1419 aaKnown RBP16.63■□□□□ 0.25
COL3A1-206ENST00000487010 PZPP20742 1482 aa16.63■□□□□ 0.25
COL3A1-206ENST00000487010 DHX29Q7Z478 1369 aaKnown RBP16.63■□□□□ 0.25
COL3A1-206ENST00000487010 MBD5Q9P267 1494 aa16.61■□□□□ 0.25
COL3A1-206ENST00000487010 KIAA0556O60303 1618 aa16.61■□□□□ 0.25
COL3A1-206ENST00000487010 NUP153P49790 1475 aaKnown RBP16.61■□□□□ 0.25
COL3A1-206ENST00000487010 MRC2Q9UBG0 1479 aa16.61■□□□□ 0.25
COL3A1-206ENST00000487010 BCORL1Q5H9F3 1711 aa16.6■□□□□ 0.25
COL3A1-206ENST00000487010 DISP1Q96F81 1524 aa16.59■□□□□ 0.25
COL3A1-206ENST00000487010 RAPGEF6Q8TEU7 1601 aa16.59■□□□□ 0.25
COL3A1-206ENST00000487010 KIAA0586Q9BVV6 1533 aa16.58■□□□□ 0.25
COL3A1-206ENST00000487010 ADGBQ8N7X0 1667 aa16.58■□□□□ 0.24
COL3A1-206ENST00000487010 RNF123Q5XPI4 1314 aa16.57■□□□□ 0.24
COL3A1-206ENST00000487010 NUDCQ9Y266 331 aa16.57■□□□□ 0.24
COL3A1-206ENST00000487010 USP47Q96K76 1375 aa16.57■□□□□ 0.24
COL3A1-206ENST00000487010 MYT1LQ9UL68 1186 aa16.57■□□□□ 0.24
COL3A1-206ENST00000487010 KIAA1107Q9UPP5 1409 aa16.56■□□□□ 0.24
COL3A1-206ENST00000487010 ARID4BQ4LE39 1312 aaPredicted RBP16.56■□□□□ 0.24
COL3A1-206ENST00000487010 KIF14Q15058 1648 aa16.56■□□□□ 0.24
COL3A1-206ENST00000487010 CAMSAP2Q08AD1 1489 aa16.56■□□□□ 0.24
COL3A1-206ENST00000487010 ZNF608Q9ULD9 1512 aaPredicted RBP16.55■□□□□ 0.24
COL3A1-206ENST00000487010 KDM5CP41229 1560 aa16.55■□□□□ 0.24
COL3A1-206ENST00000487010 IFT140Q96RY7 1462 aa16.55■□□□□ 0.24
COL3A1-206ENST00000487010 ITSN2Q9NZM3 1697 aa16.54■□□□□ 0.24
COL3A1-206ENST00000487010 ADGRL2O95490 1459 aa16.53■□□□□ 0.24
COL3A1-206ENST00000487010 TROQ12816 1431 aaPredicted RBP16.53■□□□□ 0.24
COL3A1-206ENST00000487010 CROCC2H7BZ55 1655 aa16.52■□□□□ 0.24
COL3A1-206ENST00000487010 CFDP1Q9UEE9 299 aaPredicted RBP16.52■□□□□ 0.23
COL3A1-206ENST00000487010 PRG4Q92954 1404 aaPredicted RBP16.52■□□□□ 0.23
COL3A1-206ENST00000487010 POLR3GLQ9BT43 218 aa16.51■□□□□ 0.23
COL3A1-206ENST00000487010 GPATCH8Q9UKJ3 1502 aaKnown RBP16.5■□□□□ 0.23
COL3A1-206ENST00000487010 PKD2Q13563 968 aa16.5■□□□□ 0.23
COL3A1-206ENST00000487010 ZNF326Q5BKZ1 582 aaKnown RBP16.5■□□□□ 0.23
COL3A1-206ENST00000487010 PNISRQ8TF01 805 aaKnown RBP16.5■□□□□ 0.23
COL3A1-206ENST00000487010 ROCK2O75116 1388 aaKnown RBP16.49■□□□□ 0.23
COL3A1-206ENST00000487010 UHRF1BP1Q6BDS2 1440 aa16.49■□□□□ 0.23
COL3A1-206ENST00000487010 CNGB1Q14028 1251 aaPredicted RBP16.49■□□□□ 0.23
COL3A1-206ENST00000487010 NOP58Q9Y2X3 529 aaKnown RBP16.49■□□□□ 0.23
COL3A1-206ENST00000487010 GRIN2AQ12879 1464 aa16.49■□□□□ 0.23
COL3A1-206ENST00000487010 CCDC136Q96JN2 1154 aa16.49■□□□□ 0.23
COL3A1-206ENST00000487010 ADCY10Q96PN6 1610 aa16.48■□□□□ 0.23
COL3A1-206ENST00000487010 RALGAPBQ86X10 1494 aa16.48■□□□□ 0.23
COL3A1-206ENST00000487010 ANKRD30AQ9BXX3 1397 aa16.47■□□□□ 0.23
COL3A1-206ENST00000487010 TMC1Q8TDI8 760 aa16.46■□□□□ 0.22
COL3A1-206ENST00000487010 ANKRD50Q9ULJ7 1429 aa16.44■□□□□ 0.22
COL3A1-206ENST00000487010 KIF15Q9NS87 1388 aa16.44■□□□□ 0.22
COL3A1-206ENST00000487010 ZNF777Q9ULD5 760 aaPredicted RBP16.44■□□□□ 0.22
COL3A1-206ENST00000487010 EIF4G3O43432 1585 aaKnown RBP16.44■□□□□ 0.22
COL3A1-206ENST00000487010 ARHGEF12Q9NZN5 1544 aa16.43■□□□□ 0.22
COL3A1-206ENST00000487010 LRPPRCP42704 1394 aaKnown RBP16.43■□□□□ 0.22
COL3A1-206ENST00000487010 PAK3O75914 559 aaPredicted RBP16.43■□□□□ 0.22
COL3A1-206ENST00000487010 PLB1Q6P1J6 1458 aa16.43■□□□□ 0.22
COL3A1-206ENST00000487010 DEKP35659 375 aaKnown RBP16.42■□□□□ 0.22
COL3A1-206ENST00000487010 CARD11Q9BXL7 1154 aa16.42■□□□□ 0.22
COL3A1-206ENST00000487010 KTN1Q86UP2 1357 aaKnown RBP16.42■□□□□ 0.22
COL3A1-206ENST00000487010 BRD4O60885 1362 aaPredicted RBP16.41■□□□□ 0.22
COL3A1-206ENST00000487010 IPO9Q96P70 1041 aaKnown RBP16.4■□□□□ 0.22
COL3A1-206ENST00000487010 ANP32AP39687 249 aaKnown RBP16.39■□□□□ 0.21
COL3A1-206ENST00000487010 NUP155O75694 1391 aa16.39■□□□□ 0.21
COL3A1-206ENST00000487010 MYBBP1AQ9BQG0 1328 aaKnown RBP16.39■□□□□ 0.21
COL3A1-206ENST00000487010 CEP170Q5SW79 1584 aa16.39■□□□□ 0.21
COL3A1-206ENST00000487010 E9PCH4 1651 aa16.39■□□□□ 0.21
COL3A1-206ENST00000487010 SENP3-EIF4A1A0A087X0R7 540 aa16.39■□□□□ 0.21
COL3A1-206ENST00000487010 RALBP1Q15311 655 aa16.39■□□□□ 0.21
COL3A1-206ENST00000487010 SHANK2Q9UPX8 1470 aa16.39■□□□□ 0.21
COL3A1-206ENST00000487010 KDM5DQ9BY66 1539 aa16.38■□□□□ 0.21
COL3A1-206ENST00000487010 CDC42BPAQ5VT25 1732 aa16.38■□□□□ 0.21
COL3A1-206ENST00000487010 ST20-MTHFSA0A0A6YYL1 179 aa16.38■□□□□ 0.21
COL3A1-206ENST00000487010 MAGI1Q96QZ7 1491 aaPredicted RBP16.36■□□□□ 0.21
COL3A1-206ENST00000487010 CHMP7Q8WUX9 453 aaPredicted RBP16.36■□□□□ 0.21
COL3A1-206ENST00000487010 C9orf84Q5VXU9 1444 aa16.36■□□□□ 0.21
COL3A1-206ENST00000487010 NBR1Q14596 966 aa16.35■□□□□ 0.21
COL3A1-206ENST00000487010 CARMIL2Q6F5E8 1435 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms