RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 ARHGEF40Q8TER5 1519 aa19.96■□□□□ 0.79
HDAC6-229ENST00000486665 SIGLEC1Q9BZZ2 1709 aa19.96■□□□□ 0.79
HDAC6-229ENST00000486665 CDK11AQ9UQ88 783 aaPredicted RBP19.95■□□□□ 0.78
HDAC6-229ENST00000486665 AKNAQ7Z591 1439 aa19.93■□□□□ 0.78
HDAC6-229ENST00000486665 FANCAO15360 1455 aa19.92■□□□□ 0.78
HDAC6-229ENST00000486665 DENND4BO75064 1496 aaPredicted RBP19.92■□□□□ 0.78
HDAC6-229ENST00000486665 LRRC9Q6ZRR7 1453 aa19.91■□□□□ 0.78
HDAC6-229ENST00000486665 RIMS1Q86UR5 1692 aaKnown RBP19.91■□□□□ 0.78
HDAC6-229ENST00000486665 ARID4BQ4LE39 1312 aaPredicted RBP19.9■□□□□ 0.78
HDAC6-229ENST00000486665 MTUS2Q5JR59 1369 aa19.9■□□□□ 0.78
HDAC6-229ENST00000486665 CFAP74Q9C0B2 1584 aa19.9■□□□□ 0.78
HDAC6-229ENST00000486665 TROQ12816 1431 aaPredicted RBP19.89■□□□□ 0.77
HDAC6-229ENST00000486665 ZMYM4Q5VZL5 1548 aa19.87■□□□□ 0.77
HDAC6-229ENST00000486665 YEATS2Q9ULM3 1422 aa19.87■□□□□ 0.77
HDAC6-229ENST00000486665 LMTK3Q96Q04 1460 aa19.86■□□□□ 0.77
HDAC6-229ENST00000486665 ZFYVE16Q7Z3T8 1539 aa19.84■□□□□ 0.77
HDAC6-229ENST00000486665 EHBP1L1Q8N3D4 1523 aa19.83■□□□□ 0.77
HDAC6-229ENST00000486665 KIF14Q15058 1648 aa19.81■□□□□ 0.76
HDAC6-229ENST00000486665 PLCH2O75038 1416 aa19.8■□□□□ 0.76
HDAC6-229ENST00000486665 POGZQ7Z3K3 1410 aa19.79■□□□□ 0.76
HDAC6-229ENST00000486665 SCAPERQ9BY12 1400 aa19.78■□□□□ 0.76
HDAC6-229ENST00000486665 MYO5CQ9NQX4 1742 aa19.78■□□□□ 0.76
HDAC6-229ENST00000486665 PLPPR3Q6T4P5 718 aa19.77■□□□□ 0.76
HDAC6-229ENST00000486665 NCOA2Q15596 1464 aa19.77■□□□□ 0.76
HDAC6-229ENST00000486665 MAGI2Q86UL8 1455 aa19.76■□□□□ 0.75
HDAC6-229ENST00000486665 FER1L4A9Z1Z3 1794 aa19.75■□□□□ 0.75
HDAC6-229ENST00000486665 HSPA2P54652 639 aa19.75■□□□□ 0.75
HDAC6-229ENST00000486665 MLECQ14165 292 aa19.74■□□□□ 0.75
HDAC6-229ENST00000486665 SUPT6HQ7KZ85 1726 aaKnown RBP19.73■□□□□ 0.75
HDAC6-229ENST00000486665 FBXO41Q8TF61 875 aa19.73■□□□□ 0.75
HDAC6-229ENST00000486665 CCNB3Q8WWL7 1395 aa19.7■□□□□ 0.74
HDAC6-229ENST00000486665 GPATCH8Q9UKJ3 1502 aaKnown RBP19.7■□□□□ 0.74
HDAC6-229ENST00000486665 ATP10AO60312 1499 aa19.69■□□□□ 0.74
HDAC6-229ENST00000486665 ARHGEF12Q9NZN5 1544 aa19.69■□□□□ 0.74
HDAC6-229ENST00000486665 CDC42BPBQ9Y5S2 1711 aa19.68■□□□□ 0.74
HDAC6-229ENST00000486665 EFCAB2Q5VUJ9 269 aa19.67■□□□□ 0.74
HDAC6-229ENST00000486665 C9orf84Q5VXU9 1444 aa19.67■□□□□ 0.74
HDAC6-229ENST00000486665 ARHGAP5Q13017 1502 aa19.66■□□□□ 0.74
HDAC6-229ENST00000486665 KDM5CP41229 1560 aa19.66■□□□□ 0.74
HDAC6-229ENST00000486665 MYOM3Q5VTT5 1437 aa19.65■□□□□ 0.74
HDAC6-229ENST00000486665 AFAP1Q8N556 730 aa19.64■□□□□ 0.73
HDAC6-229ENST00000486665 CFDP1Q9UEE9 299 aaPredicted RBP19.64■□□□□ 0.73
HDAC6-229ENST00000486665 DIP2CQ9Y2E4 1556 aa19.63■□□□□ 0.73
HDAC6-229ENST00000486665 CDC42BPAQ5VT25 1732 aa19.62■□□□□ 0.73
HDAC6-229ENST00000486665 ZNF518AQ6AHZ1 1483 aa19.62■□□□□ 0.73
HDAC6-229ENST00000486665 CEBPAP49715 358 aaPredicted RBP19.62■□□□□ 0.73
HDAC6-229ENST00000486665 ABCA6Q8N139 1617 aa19.62■□□□□ 0.73
HDAC6-229ENST00000486665 ZNF644Q9H582 1327 aaPredicted RBP19.61■□□□□ 0.73
HDAC6-229ENST00000486665 ZNF777Q9ULD5 760 aaPredicted RBP19.61■□□□□ 0.73
HDAC6-229ENST00000486665 PREX1Q8TCU6 1659 aa19.6■□□□□ 0.73
HDAC6-229ENST00000486665 PREX2Q70Z35 1606 aa19.6■□□□□ 0.73
HDAC6-229ENST00000486665 FGD6Q6ZV73 1430 aa19.59■□□□□ 0.73
HDAC6-229ENST00000486665 ITSN2Q9NZM3 1697 aa19.58■□□□□ 0.72
HDAC6-229ENST00000486665 MIA2Q96PC5 1412 aa19.58■□□□□ 0.72
HDAC6-229ENST00000486665 TRAPPC8Q9Y2L5 1435 aa19.58■□□□□ 0.72
HDAC6-229ENST00000486665 ABCC1P33527 1531 aa19.57■□□□□ 0.72
HDAC6-229ENST00000486665 REREQ9P2R6 1566 aa19.55■□□□□ 0.72
HDAC6-229ENST00000486665 STRCQ7RTU9 1775 aa19.55■□□□□ 0.72
HDAC6-229ENST00000486665 RRBP1Q9P2E9 1410 aaKnown RBP19.54■□□□□ 0.72
HDAC6-229ENST00000486665 MLH3Q9UHC1 1453 aa19.54■□□□□ 0.72
HDAC6-229ENST00000486665 KIDINS220Q9ULH0 1771 aa19.53■□□□□ 0.72
HDAC6-229ENST00000486665 FAM50AQ14320 339 aaKnown RBP19.53■□□□□ 0.72
HDAC6-229ENST00000486665 C3P01024 1663 aa19.52■□□□□ 0.72
HDAC6-229ENST00000486665 HNRNPMP52272 730 aaKnown RBP eCLIP19.52■□□□□ 0.72
HDAC6-229ENST00000486665 PTPN23Q9H3S7 1636 aa19.51■□□□□ 0.71
HDAC6-229ENST00000486665 MYT1LQ9UL68 1186 aa19.51■□□□□ 0.71
HDAC6-229ENST00000486665 TCOF1Q13428 1488 aaKnown RBP19.51■□□□□ 0.71
HDAC6-229ENST00000486665 SAMD9LQ8IVG5 1584 aa19.51■□□□□ 0.71
HDAC6-229ENST00000486665 CAMSAP2Q08AD1 1489 aa19.5■□□□□ 0.71
HDAC6-229ENST00000486665 CERKQ8TCT0 537 aa19.49■□□□□ 0.71
HDAC6-229ENST00000486665 AGLP35573 1532 aa19.48■□□□□ 0.71
HDAC6-229ENST00000486665 KIAA1107Q9UPP5 1409 aa19.46■□□□□ 0.71
HDAC6-229ENST00000486665 MBD5Q9P267 1494 aa19.46■□□□□ 0.71
HDAC6-229ENST00000486665 SETD1BQ9UPS6 1966 aaKnown RBP19.46■□□□□ 0.71
HDAC6-229ENST00000486665 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.45■□□□□ 0.7
HDAC6-229ENST00000486665 UHRF1BP1Q6BDS2 1440 aa19.45■□□□□ 0.7
HDAC6-229ENST00000486665 PLEKHH2Q8IVE3 1493 aa19.45■□□□□ 0.7
HDAC6-229ENST00000486665 TRIM26Q12899 539 aaPredicted RBP19.44■□□□□ 0.7
HDAC6-229ENST00000486665 SYCP2Q9BX26 1530 aa19.44■□□□□ 0.7
HDAC6-229ENST00000486665 ITGAEP38570 1179 aa19.43■□□□□ 0.7
HDAC6-229ENST00000486665 ABCC5O15440 1437 aa19.42■□□□□ 0.7
HDAC6-229ENST00000486665 RSPH4AQ5TD94 716 aa19.4■□□□□ 0.7
HDAC6-229ENST00000486665 PTPRKQ15262 1439 aa19.4■□□□□ 0.7
HDAC6-229ENST00000486665 DAPK1P53355 1430 aa19.38■□□□□ 0.69
HDAC6-229ENST00000486665 ARHGEF5Q12774 1597 aa19.37■□□□□ 0.69
HDAC6-229ENST00000486665 INO80Q9ULG1 1556 aaPredicted RBP19.36■□□□□ 0.69
HDAC6-229ENST00000486665 CCDC141Q6ZP82 1450 aa19.36■□□□□ 0.69
HDAC6-229ENST00000486665 CHIC2Q9UKJ5 165 aa19.36■□□□□ 0.69
HDAC6-229ENST00000486665 TSPY4P0CV99 314 aa19.35■□□□□ 0.69
HDAC6-229ENST00000486665 TSPY10P0CW01 314 aa19.35■□□□□ 0.69
HDAC6-229ENST00000486665 MROH2AA6NES4 1674 aa19.35■□□□□ 0.69
HDAC6-229ENST00000486665 DNMT1P26358 1616 aaKnown RBP19.35■□□□□ 0.69
HDAC6-229ENST00000486665 ATP7AQ04656 1500 aa19.35■□□□□ 0.69
HDAC6-229ENST00000486665 PLXNC1O60486 1568 aa19.34■□□□□ 0.69
HDAC6-229ENST00000486665 CLTCQ00610 1675 aaKnown RBP19.33■□□□□ 0.69
HDAC6-229ENST00000486665 SPAG9O60271 1321 aaKnown RBP19.33■□□□□ 0.69
HDAC6-229ENST00000486665 ESF1Q9H501 851 aaKnown RBP19.33■□□□□ 0.68
HDAC6-229ENST00000486665 PTPRTO14522 1441 aa19.33■□□□□ 0.68
HDAC6-229ENST00000486665 CNTLNQ9NXG0 1405 aa19.33■□□□□ 0.68
HDAC6-229ENST00000486665 DMRT2Q9Y5R5 561 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms