RNA–Protein interactions for RNA: ENST00000485737.1

SMARCC1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 4

Gene SMARCC1, Length 631 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-206ENST00000485737 PPARGC1BQ86YN6 1023 aaKnown RBP7.5□□□□□ -1.21
SMARCC1-206ENST00000485737 BOLA1Q9Y3E2 137 aa7.5□□□□□ -1.21
SMARCC1-206ENST00000485737 AMER1Q5JTC6 1135 aaPredicted RBP7.49□□□□□ -1.21
SMARCC1-206ENST00000485737 HS6ST3Q8IZP7 471 aa7.49□□□□□ -1.21
SMARCC1-206ENST00000485737 MS4A4AQ96JQ5 239 aa7.48□□□□□ -1.21
SMARCC1-206ENST00000485737 MFRPQ9BY79 579 aa7.48□□□□□ -1.21
SMARCC1-206ENST00000485737 ZEB1P37275 1124 aaPredicted RBP7.47□□□□□ -1.21
SMARCC1-206ENST00000485737 RTN4Q9NQC3 1192 aaKnown RBP7.47□□□□□ -1.21
SMARCC1-206ENST00000485737 MMRN1Q13201 1228 aa7.45□□□□□ -1.22
SMARCC1-206ENST00000485737 FBXO22Q8NEZ5 403 aa7.45□□□□□ -1.22
SMARCC1-206ENST00000485737 RSF1Q96T23 1441 aaPredicted RBP7.44□□□□□ -1.22
SMARCC1-206ENST00000485737 RB1CC1Q8TDY2 1594 aa7.43□□□□□ -1.22
SMARCC1-206ENST00000485737 SPNS2Q8IVW8 549 aa7.43□□□□□ -1.22
SMARCC1-206ENST00000485737 MICALL2Q8IY33 904 aa7.43□□□□□ -1.22
SMARCC1-206ENST00000485737 LOC105371045A0A1W2PR82 267 aa7.41□□□□□ -1.22
SMARCC1-206ENST00000485737 EMP3P54852 163 aa7.41□□□□□ -1.22
SMARCC1-206ENST00000485737 RIMBP2O15034 1052 aa7.38□□□□□ -1.23
SMARCC1-206ENST00000485737 PPP1R37O75864 691 aa7.38□□□□□ -1.23
SMARCC1-206ENST00000485737 NKX1-1Q15270 411 aaPredicted RBP7.38□□□□□ -1.23
SMARCC1-206ENST00000485737 PTGER2P43116 358 aa7.37□□□□□ -1.23
SMARCC1-206ENST00000485737 TMEM92Q6UXU6 159 aa7.35□□□□□ -1.23
SMARCC1-206ENST00000485737 SCRIBQ14160 1630 aa7.34□□□□□ -1.23
SMARCC1-206ENST00000485737 DNAJC5Q9H3Z4 198 aa7.34□□□□□ -1.23
SMARCC1-206ENST00000485737 RYDENQ9NUL5 291 aaKnown RBP7.34□□□□□ -1.23
SMARCC1-206ENST00000485737 DOK7Q18PE1 504 aa7.33□□□□□ -1.24
SMARCC1-206ENST00000485737 EIF4G1Q04637 1599 aaKnown RBP7.33□□□□□ -1.24
SMARCC1-206ENST00000485737 ZNF710Q8N1W2 664 aa7.31□□□□□ -1.24
SMARCC1-206ENST00000485737 ZSWIM6Q9HCJ5 1215 aa7.31□□□□□ -1.24
SMARCC1-206ENST00000485737 TMC2Q8TDI7 906 aa7.3□□□□□ -1.24
SMARCC1-206ENST00000485737 C2orf72A6NCS6 295 aa7.29□□□□□ -1.24
SMARCC1-206ENST00000485737 GTPBP6O43824 516 aaPredicted RBP7.29□□□□□ -1.24
SMARCC1-206ENST00000485737 HS3ST6Q96QI5 342 aa7.29□□□□□ -1.24
SMARCC1-206ENST00000485737 MARVELD3Q96A59 401 aa7.28□□□□□ -1.24
SMARCC1-206ENST00000485737 NACADO15069 1562 aa7.28□□□□□ -1.24
SMARCC1-206ENST00000485737 HOXB3P14651 431 aaPredicted RBP7.27□□□□□ -1.25
SMARCC1-206ENST00000485737 BBXQ8WY36 941 aaPredicted RBP7.27□□□□□ -1.25
SMARCC1-206ENST00000485737 BAZ1AQ9NRL2 1556 aaPredicted RBP7.27□□□□□ -1.25
SMARCC1-206ENST00000485737 FAM205CA6NFA0 338 aa7.25□□□□□ -1.25
SMARCC1-206ENST00000485737 HOXB1P14653 301 aaPredicted RBP7.25□□□□□ -1.25
SMARCC1-206ENST00000485737 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.25□□□□□ -1.25
SMARCC1-206ENST00000485737 KIF3CO14782 793 aa7.24□□□□□ -1.25
SMARCC1-206ENST00000485737 WRNQ14191 1432 aaPredicted RBP eCLIP7.24□□□□□ -1.254e-9■■□□□ 14.1
SMARCC1-206ENST00000485737 MROH2BQ7Z745 1585 aa7.23□□□□□ -1.25
SMARCC1-206ENST00000485737 CFAP44Q96MT7 982 aa7.22□□□□□ -1.25
SMARCC1-206ENST00000485737 SPRYD3Q8NCJ5 442 aa7.21□□□□□ -1.26
SMARCC1-206ENST00000485737 ERBB3P21860 1342 aa7.21□□□□□ -1.26
SMARCC1-206ENST00000485737 CECR2Q9BXF3 1484 aa7.2□□□□□ -1.26
SMARCC1-206ENST00000485737 PAXIP1Q6ZW49 1069 aaPredicted RBP7.2□□□□□ -1.26
SMARCC1-206ENST00000485737 RNF166Q96A37 237 aaPredicted RBP7.2□□□□□ -1.26
SMARCC1-206ENST00000485737 KRTAP3-3Q9BYR6 98 aa7.2□□□□□ -1.26
SMARCC1-206ENST00000485737 KRTAP3-2Q9BYR7 98 aa7.2□□□□□ -1.26
SMARCC1-206ENST00000485737 GPHNQ9NQX3 736 aaPredicted RBP7.2□□□□□ -1.26
SMARCC1-206ENST00000485737 DSG2Q14126 1118 aa7.19□□□□□ -1.26
SMARCC1-206ENST00000485737 ARSIQ5FYB1 569 aa7.19□□□□□ -1.26
SMARCC1-206ENST00000485737 PLPP6Q8IY26 295 aa7.19□□□□□ -1.26
SMARCC1-206ENST00000485737 FOXK1P85037 733 aa7.18□□□□□ -1.26
SMARCC1-206ENST00000485737 KHSRPQ92945 711 aaKnown RBP eCLIP7.18□□□□□ -1.261e-6■□□□□ 10.5
SMARCC1-206ENST00000485737 ACIN1Q9UKV3 1341 aaKnown RBP7.18□□□□□ -1.26
SMARCC1-206ENST00000485737 WIZO95785 1651 aa7.18□□□□□ -1.26
SMARCC1-206ENST00000485737 PDE4AP27815 886 aa7.17□□□□□ -1.26
SMARCC1-206ENST00000485737 MYT1Q01538 1121 aa7.17□□□□□ -1.26
SMARCC1-206ENST00000485737 GPR153Q6NV75 609 aa7.17□□□□□ -1.26
SMARCC1-206ENST00000485737 LARP6Q9BRS8 491 aaKnown RBP7.17□□□□□ -1.26
SMARCC1-206ENST00000485737 TOP2AP11388 1531 aaKnown RBP7.17□□□□□ -1.26
SMARCC1-206ENST00000485737 CRISPLD2Q9H0B8 497 aa7.16□□□□□ -1.26
SMARCC1-206ENST00000485737 MYT1LQ9UL68 1186 aa7.16□□□□□ -1.26
SMARCC1-206ENST00000485737 NCKAP5LQ9HCH0 1330 aa7.16□□□□□ -1.26
SMARCC1-206ENST00000485737 PPP1R15BQ5SWA1 713 aa7.15□□□□□ -1.26
SMARCC1-206ENST00000485737 CADPS2Q86UW7 1296 aa7.15□□□□□ -1.26
SMARCC1-206ENST00000485737 PCDHGA4Q9Y5G9 962 aa7.15□□□□□ -1.26
SMARCC1-206ENST00000485737 EEA1Q15075 1411 aa7.15□□□□□ -1.27
SMARCC1-206ENST00000485737 NUDT7P0C024 238 aa7.14□□□□□ -1.27
SMARCC1-206ENST00000485737 VARS2Q5ST30 1063 aaKnown RBP7.14□□□□□ -1.27
SMARCC1-206ENST00000485737 ZNF687Q8N1G0 1237 aa7.14□□□□□ -1.27
SMARCC1-206ENST00000485737 DDX27Q96GQ7 796 aaKnown RBP7.14□□□□□ -1.27
SMARCC1-206ENST00000485737 SLC34A2O95436 690 aa7.13□□□□□ -1.27
SMARCC1-206ENST00000485737 FAM9AQ8IZU1 332 aaPredicted RBP7.13□□□□□ -1.27
SMARCC1-206ENST00000485737 UPF1Q92900 1129 aaKnown RBP eCLIP7.13□□□□□ -1.27
SMARCC1-206ENST00000485737 POTEB3A0JP26 581 aa7.12□□□□□ -1.27
SMARCC1-206ENST00000485737 PBX2P40425 430 aa7.12□□□□□ -1.27
SMARCC1-206ENST00000485737 POTEBQ6S5H4 581 aa7.12□□□□□ -1.27
SMARCC1-206ENST00000485737 CEP162Q5TB80 1403 aa7.11□□□□□ -1.27
SMARCC1-206ENST00000485737 TNIKQ9UKE5 1360 aa7.11□□□□□ -1.27
SMARCC1-206ENST00000485737 CENPBP07199 599 aaPredicted RBP7.11□□□□□ -1.27
SMARCC1-206ENST00000485737 SMARCA2P51531 1590 aa7.11□□□□□ -1.27
SMARCC1-206ENST00000485737 TBC1D12O60347 775 aa7.1□□□□□ -1.27
SMARCC1-206ENST00000485737 NEUROD1Q13562 356 aa7.1□□□□□ -1.27
SMARCC1-206ENST00000485737 SMARCA4P51532 1647 aa7.09□□□□□ -1.27
SMARCC1-206ENST00000485737 ZNF316A6NFI3 1004 aaPredicted RBP7.09□□□□□ -1.27
SMARCC1-206ENST00000485737 CCER1Q8TC90 406 aaPredicted RBP7.09□□□□□ -1.27
SMARCC1-206ENST00000485737 PTCD2Q8WV60 388 aaKnown RBP7.09□□□□□ -1.27
SMARCC1-206ENST00000485737 MFSD10Q14728 455 aa7.08□□□□□ -1.28
SMARCC1-206ENST00000485737 LHX6Q9UPM6 363 aa7.08□□□□□ -1.28
SMARCC1-206ENST00000485737 CCDC88BA6NC98 1476 aa7.08□□□□□ -1.28
SMARCC1-206ENST00000485737 PSDA5PKW4 1024 aaPredicted RBP7.07□□□□□ -1.28
SMARCC1-206ENST00000485737 DIEXFQ68CQ4 756 aaKnown RBP7.07□□□□□ -1.28
SMARCC1-206ENST00000485737 GOLGA3Q08378 1498 aa7.06□□□□□ -1.28
SMARCC1-206ENST00000485737 OXER1Q8TDS5 423 aa7.06□□□□□ -1.28
SMARCC1-206ENST00000485737 ABCC8Q09428 1581 aa7.06□□□□□ -1.28
SMARCC1-206ENST00000485737 MAP3K9P80192 1104 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms