RNA–Protein interactions for RNA: ENST00000482733.1

HMGN1-214, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 701 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-214ENST00000482733 CCNB3Q8WWL7 1395 aa26.07■■□□□ 1.76
HMGN1-214ENST00000482733 ADGRL1O94910 1474 aa26.07■■□□□ 1.76
HMGN1-214ENST00000482733 LRRC9Q6ZRR7 1453 aa26.06■■□□□ 1.76
HMGN1-214ENST00000482733 GPATCH8Q9UKJ3 1502 aaKnown RBP26.05■■□□□ 1.76
HMGN1-214ENST00000482733 PREX2Q70Z35 1606 aa26.05■■□□□ 1.76
HMGN1-214ENST00000482733 SCAPERQ9BY12 1400 aa26.05■■□□□ 1.76
HMGN1-214ENST00000482733 CFDP1Q9UEE9 299 aaPredicted RBP26.01■■□□□ 1.75
HMGN1-214ENST00000482733 CDC42BPBQ9Y5S2 1711 aa26■■□□□ 1.75
HMGN1-214ENST00000482733 NCOA2Q15596 1464 aa26■■□□□ 1.75
HMGN1-214ENST00000482733 KANK4Q5T7N3 995 aaPredicted RBP26■■□□□ 1.75
HMGN1-214ENST00000482733 CDC42BPAQ5VT25 1732 aa25.99■■□□□ 1.75
HMGN1-214ENST00000482733 SUPT6HQ7KZ85 1726 aaKnown RBP25.99■■□□□ 1.75
HMGN1-214ENST00000482733 POGZQ7Z3K3 1410 aa25.98■■□□□ 1.75
HMGN1-214ENST00000482733 FRMPD1Q5SYB0 1578 aa25.97■■□□□ 1.75
HMGN1-214ENST00000482733 ZNF777Q9ULD5 760 aaPredicted RBP25.96■■□□□ 1.75
HMGN1-214ENST00000482733 RICTORQ6R327 1708 aa25.94■■□□□ 1.74
HMGN1-214ENST00000482733 ZNF518AQ6AHZ1 1483 aa25.93■■□□□ 1.74
HMGN1-214ENST00000482733 ABCC1P33527 1531 aa25.93■■□□□ 1.74
HMGN1-214ENST00000482733 ZMYM4Q5VZL5 1548 aa25.93■■□□□ 1.74
HMGN1-214ENST00000482733 MAGI2Q86UL8 1455 aa25.92■■□□□ 1.74
HMGN1-214ENST00000482733 PLEKHH2Q8IVE3 1493 aa25.92■■□□□ 1.74
HMGN1-214ENST00000482733 ITSN2Q9NZM3 1697 aa25.91■■□□□ 1.74
HMGN1-214ENST00000482733 KIAA1107Q9UPP5 1409 aa25.9■■□□□ 1.74
HMGN1-214ENST00000482733 SAMD9LQ8IVG5 1584 aa25.88■■□□□ 1.73
HMGN1-214ENST00000482733 AFAP1Q8N556 730 aa25.88■■□□□ 1.73
HMGN1-214ENST00000482733 ARHGEF12Q9NZN5 1544 aa25.88■■□□□ 1.73
HMGN1-214ENST00000482733 TRAPPC8Q9Y2L5 1435 aa25.85■■□□□ 1.73
HMGN1-214ENST00000482733 ZFYVE16Q7Z3T8 1539 aa25.84■■□□□ 1.73
HMGN1-214ENST00000482733 KDM5CP41229 1560 aa25.84■■□□□ 1.73
HMGN1-214ENST00000482733 ARHGEF40Q8TER5 1519 aa25.83■■□□□ 1.73
HMGN1-214ENST00000482733 HNRNPMP52272 730 aaKnown RBP eCLIP25.83■■□□□ 1.73
HMGN1-214ENST00000482733 SYCP2Q9BX26 1530 aa25.83■■□□□ 1.72
HMGN1-214ENST00000482733 ZNF644Q9H582 1327 aaPredicted RBP25.81■■□□□ 1.72
HMGN1-214ENST00000482733 MYOM3Q5VTT5 1437 aa25.8■■□□□ 1.72
HMGN1-214ENST00000482733 MIA2Q96PC5 1412 aa25.8■■□□□ 1.72
HMGN1-214ENST00000482733 MLH3Q9UHC1 1453 aa25.8■■□□□ 1.72
HMGN1-214ENST00000482733 MYT1LQ9UL68 1186 aa25.8■■□□□ 1.72
HMGN1-214ENST00000482733 YEATS2Q9ULM3 1422 aa25.8■■□□□ 1.72
HMGN1-214ENST00000482733 RSPH4AQ5TD94 716 aa25.77■■□□□ 1.72
HMGN1-214ENST00000482733 CAMSAP2Q08AD1 1489 aa25.76■■□□□ 1.71
HMGN1-214ENST00000482733 HECW2Q9P2P5 1572 aa25.76■■□□□ 1.71
HMGN1-214ENST00000482733 ATP10AO60312 1499 aa25.75■■□□□ 1.71
HMGN1-214ENST00000482733 MBD5Q9P267 1494 aa25.75■■□□□ 1.71
HMGN1-214ENST00000482733 SPAG9O60271 1321 aaKnown RBP25.75■■□□□ 1.71
HMGN1-214ENST00000482733 KDM4FA0A1W2PPD8 638 aa25.75■■□□□ 1.71
HMGN1-214ENST00000482733 ARID4BQ4LE39 1312 aaPredicted RBP25.73■■□□□ 1.71
HMGN1-214ENST00000482733 C9orf84Q5VXU9 1444 aa25.72■■□□□ 1.71
HMGN1-214ENST00000482733 AEBP2Q6ZN18 517 aaPredicted RBP25.7■■□□□ 1.7
HMGN1-214ENST00000482733 CCDC141Q6ZP82 1450 aa25.69■■□□□ 1.7
HMGN1-214ENST00000482733 DIP2CQ9Y2E4 1556 aa25.66■■□□□ 1.7
HMGN1-214ENST00000482733 FGD6Q6ZV73 1430 aa25.66■■□□□ 1.7
HMGN1-214ENST00000482733 ARHGEF5Q12774 1597 aa25.65■■□□□ 1.7
HMGN1-214ENST00000482733 RTEL1-TNFRSF6BF6WH68 1400 aa25.65■■□□□ 1.7
HMGN1-214ENST00000482733 TSPY4P0CV99 314 aa25.65■■□□□ 1.7
HMGN1-214ENST00000482733 TSPY10P0CW01 314 aa25.65■■□□□ 1.7
HMGN1-214ENST00000482733 KIDINS220Q9ULH0 1771 aa25.64■■□□□ 1.7
HMGN1-214ENST00000482733 ATP7AQ04656 1500 aa25.64■■□□□ 1.7
HMGN1-214ENST00000482733 REREQ9P2R6 1566 aa25.64■■□□□ 1.69
HMGN1-214ENST00000482733 ABCA6Q8N139 1617 aa25.63■■□□□ 1.69
HMGN1-214ENST00000482733 INO80Q9ULG1 1556 aaPredicted RBP25.62■■□□□ 1.69
HMGN1-214ENST00000482733 TCOF1Q13428 1488 aaKnown RBP25.6■■□□□ 1.69
HMGN1-214ENST00000482733 PTPN23Q9H3S7 1636 aa25.6■■□□□ 1.69
HMGN1-214ENST00000482733 BCORL1Q5H9F3 1711 aa25.57■■□□□ 1.68
HMGN1-214ENST00000482733 AGLP35573 1532 aa25.57■■□□□ 1.68
HMGN1-214ENST00000482733 PPARGC1BQ86YN6 1023 aaKnown RBP25.55■■□□□ 1.68
HMGN1-214ENST00000482733 ADAMTSL3P82987 1691 aa25.55■■□□□ 1.68
HMGN1-214ENST00000482733 A2MP01023 1474 aa25.54■■□□□ 1.68
HMGN1-214ENST00000482733 MLECQ14165 292 aa25.54■■□□□ 1.68
HMGN1-214ENST00000482733 SIGLEC1Q9BZZ2 1709 aa25.54■■□□□ 1.68
HMGN1-214ENST00000482733 MAST1Q9Y2H9 1570 aa25.52■■□□□ 1.68
HMGN1-214ENST00000482733 ABCC5O15440 1437 aa25.51■■□□□ 1.67
HMGN1-214ENST00000482733 FAM50AQ14320 339 aaKnown RBP25.5■■□□□ 1.67
HMGN1-214ENST00000482733 DHX29Q7Z478 1369 aaKnown RBP25.5■■□□□ 1.67
HMGN1-214ENST00000482733 SHANK2Q9UPX8 1470 aa25.49■■□□□ 1.67
HMGN1-214ENST00000482733 DAPK1P53355 1430 aa25.48■■□□□ 1.67
HMGN1-214ENST00000482733 ADGBQ8N7X0 1667 aa25.48■■□□□ 1.67
HMGN1-214ENST00000482733 PLXNC1O60486 1568 aa25.48■■□□□ 1.67
HMGN1-214ENST00000482733 MADDQ8WXG6 1647 aa25.46■■□□□ 1.67
HMGN1-214ENST00000482733 DNMT1P26358 1616 aaKnown RBP25.45■■□□□ 1.67
HMGN1-214ENST00000482733 PTPRMP28827 1452 aa25.45■■□□□ 1.66
HMGN1-214ENST00000482733 ESF1Q9H501 851 aaKnown RBP25.42■■□□□ 1.66
HMGN1-214ENST00000482733 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.42■■□□□ 1.66
HMGN1-214ENST00000482733 PPP6R1Q9UPN7 881 aa25.4■■□□□ 1.66
HMGN1-214ENST00000482733 CROCC2H7BZ55 1655 aa25.39■■□□□ 1.66
HMGN1-214ENST00000482733 ANKRD30AQ9BXX3 1397 aa25.38■■□□□ 1.65
HMGN1-214ENST00000482733 KIF3BO15066 747 aa25.37■■□□□ 1.65
HMGN1-214ENST00000482733 GGT6Q6P531 493 aa25.37■■□□□ 1.65
HMGN1-214ENST00000482733 CNTLNQ9NXG0 1405 aa25.37■■□□□ 1.65
HMGN1-214ENST00000482733 FER1L4A9Z1Z3 1794 aa25.36■■□□□ 1.65
HMGN1-214ENST00000482733 RIMS1Q86UR5 1692 aaKnown RBP25.36■■□□□ 1.65
HMGN1-214ENST00000482733 KIF15Q9NS87 1388 aa25.36■■□□□ 1.65
HMGN1-214ENST00000482733 RRP7BPQ9NSQ0 103 aa25.35■■□□□ 1.65
HMGN1-214ENST00000482733 CHIC2Q9UKJ5 165 aa25.35■■□□□ 1.65
HMGN1-214ENST00000482733 DUOX2Q9NRD8 1548 aa25.35■■□□□ 1.65
HMGN1-214ENST00000482733 RRBP1Q9P2E9 1410 aaKnown RBP25.35■■□□□ 1.65
HMGN1-214ENST00000482733 ADGRL2O95490 1459 aa25.33■■□□□ 1.65
HMGN1-214ENST00000482733 NCOA1Q15788 1441 aa25.32■■□□□ 1.64
HMGN1-214ENST00000482733 ERBINQ96RT1 1412 aa25.29■■□□□ 1.64
HMGN1-214ENST00000482733 EIF2AK4Q9P2K8 1649 aaKnown RBP25.27■■□□□ 1.64
HMGN1-214ENST00000482733 PLPPR3Q6T4P5 718 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms