RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 EFCAB3Q8N7B9 438 aa14□□□□□ -0.17
VPS50-215ENST00000480943 RGS20O76081 388 aa13.97□□□□□ -0.17
VPS50-215ENST00000480943 VASPP50552 380 aaPredicted RBP13.95□□□□□ -0.18
VPS50-215ENST00000480943 CIZ1Q9ULV3 898 aaPredicted RBP13.93□□□□□ -0.18
VPS50-215ENST00000480943 SOX12O15370 315 aa13.91□□□□□ -0.18
VPS50-215ENST00000480943 KHSRPQ92945 711 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS50-215ENST00000480943 IRX2Q9BZI1 471 aaPredicted RBP13.91□□□□□ -0.18
VPS50-215ENST00000480943 ADGRD1Q6QNK2 874 aa13.87□□□□□ -0.19
VPS50-215ENST00000480943 AXIN2Q9Y2T1 843 aa13.85□□□□□ -0.19
VPS50-215ENST00000480943 NUDT7P0C024 238 aa13.82□□□□□ -0.2
VPS50-215ENST00000480943 SPOCK2Q92563 424 aa13.82□□□□□ -0.2
VPS50-215ENST00000480943 TRIM41Q8WV44 630 aa13.81□□□□□ -0.2
VPS50-215ENST00000480943 ARHGAP33O14559 1287 aa13.8□□□□□ -0.2
VPS50-215ENST00000480943 POTEEQ6S8J3 1075 aa13.8□□□□□ -0.2
VPS50-215ENST00000480943 PSDA5PKW4 1024 aaPredicted RBP13.79□□□□□ -0.2
VPS50-215ENST00000480943 TK2O00142 265 aa13.79□□□□□ -0.2
VPS50-215ENST00000480943 LHX6Q9UPM6 363 aa13.79□□□□□ -0.2
VPS50-215ENST00000480943 STAC3Q96MF2 364 aa13.78□□□□□ -0.2
VPS50-215ENST00000480943 MS4A4AQ96JQ5 239 aa13.75□□□□□ -0.21
VPS50-215ENST00000480943 IFFO2Q5TF58 517 aa13.74□□□□□ -0.21
VPS50-215ENST00000480943 KCTD12Q96CX2 325 aaKnown RBP13.72□□□□□ -0.21
VPS50-215ENST00000480943 PHF8Q9UPP1 1060 aa13.7□□□□□ -0.22
VPS50-215ENST00000480943 HRO43593 1189 aa13.69□□□□□ -0.22
VPS50-215ENST00000480943 SLC34A2O95436 690 aa13.69□□□□□ -0.22
VPS50-215ENST00000480943 PCDHGA4Q9Y5G9 962 aa13.68□□□□□ -0.22
VPS50-215ENST00000480943 NLRP6P59044 892 aa13.64□□□□□ -0.23
VPS50-215ENST00000480943 A0A0G2JS52 829 aa13.61□□□□□ -0.23
VPS50-215ENST00000480943 KIF3CO14782 793 aa13.61□□□□□ -0.23
VPS50-215ENST00000480943 C2orf72A6NCS6 295 aa13.59□□□□□ -0.23
VPS50-215ENST00000480943 KCNH8Q96L42 1107 aa13.58□□□□□ -0.24
VPS50-215ENST00000480943 CCDC180Q9P1Z9 1646 aa13.57□□□□□ -0.24
VPS50-215ENST00000480943 RIOK3O14730 519 aaKnown RBP13.56□□□□□ -0.24
VPS50-215ENST00000480943 PTPN5P54829 565 aa13.56□□□□□ -0.24
VPS50-215ENST00000480943 VGFO15240 615 aaPredicted RBP13.55□□□□□ -0.24
VPS50-215ENST00000480943 DMRTA1Q5VZB9 504 aa13.55□□□□□ -0.24
VPS50-215ENST00000480943 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.54□□□□□ -0.24
VPS50-215ENST00000480943 Q6ZNB5 142 aa13.54□□□□□ -0.24
VPS50-215ENST00000480943 IFNLR1Q8IU57 520 aaPredicted RBP13.54□□□□□ -0.24
VPS50-215ENST00000480943 ZFP91Q96JP5 570 aaPredicted RBP13.54□□□□□ -0.24
VPS50-215ENST00000480943 PSEN2P49810 448 aa13.52□□□□□ -0.25
VPS50-215ENST00000480943 PPP4R3BQ5MIZ7 849 aa13.51□□□□□ -0.25
VPS50-215ENST00000480943 TMC2Q8TDI7 906 aa13.5□□□□□ -0.25
VPS50-215ENST00000480943 FBXO22Q8NEZ5 403 aa13.46□□□□□ -0.25
VPS50-215ENST00000480943 TAOK2Q9UL54 1235 aa13.42□□□□□ -0.26
VPS50-215ENST00000480943 THSD4Q6ZMP0 1018 aa13.4□□□□□ -0.26
VPS50-215ENST00000480943 GOLGA8CPA6NN73 597 aa13.39□□□□□ -0.27
VPS50-215ENST00000480943 KCNK17Q96T54 332 aa13.38□□□□□ -0.27
VPS50-215ENST00000480943 VPS9D1Q9Y2B5 631 aa13.38□□□□□ -0.27
VPS50-215ENST00000480943 KDM4FA0A1W2PPD8 638 aa13.37□□□□□ -0.27
VPS50-215ENST00000480943 LAPTM4AQ15012 233 aa13.37□□□□□ -0.27
VPS50-215ENST00000480943 PTCD2Q8WV60 388 aaKnown RBP13.36□□□□□ -0.27
VPS50-215ENST00000480943 ABCC9O60706 1549 aa13.34□□□□□ -0.27
VPS50-215ENST00000480943 RNF25Q96BH1 459 aaPredicted RBP13.34□□□□□ -0.27
VPS50-215ENST00000480943 TBC1D12O60347 775 aa13.33□□□□□ -0.28
VPS50-215ENST00000480943 SLC4A5Q9BY07 1137 aa13.33□□□□□ -0.28
VPS50-215ENST00000480943 WNT2BQ93097 391 aa13.31□□□□□ -0.28
VPS50-215ENST00000480943 MFRPQ9BY79 579 aa13.3□□□□□ -0.28
VPS50-215ENST00000480943 BCL11BQ9C0K0 894 aaPredicted RBP13.3□□□□□ -0.28
VPS50-215ENST00000480943 MRPL50Q8N5N7 158 aaKnown RBP13.27□□□□□ -0.29
VPS50-215ENST00000480943 STK24Q9Y6E0 443 aa13.26□□□□□ -0.29
VPS50-215ENST00000480943 BHMG1C9JSJ3 638 aaPredicted RBP13.22□□□□□ -0.29
VPS50-215ENST00000480943 ITGBL1O95965 494 aaPredicted RBP13.22□□□□□ -0.29
VPS50-215ENST00000480943 TRAF7Q6Q0C0 670 aa13.22□□□□□ -0.29
VPS50-215ENST00000480943 NBPF3Q9H094 633 aa13.2□□□□□ -0.3
VPS50-215ENST00000480943 BCL2L12Q9HB09 334 aa13.18□□□□□ -0.3
VPS50-215ENST00000480943 FOXK1P85037 733 aa13.15□□□□□ -0.3
VPS50-215ENST00000480943 PTPREP23469 700 aa13.14□□□□□ -0.31
VPS50-215ENST00000480943 PLPP6Q8IY26 295 aa13.13□□□□□ -0.31
VPS50-215ENST00000480943 STK25O00506 426 aa13.11□□□□□ -0.31
VPS50-215ENST00000480943 NYAP1Q6ZVC0 841 aa13.11□□□□□ -0.31
VPS50-215ENST00000480943 ZNF454Q8N9F8 522 aa13.11□□□□□ -0.31
VPS50-215ENST00000480943 GFRA3O60609 400 aa13.1□□□□□ -0.31
VPS50-215ENST00000480943 ZBED2Q9BTP6 218 aa13.1□□□□□ -0.31
VPS50-215ENST00000480943 KCNC4Q03721 635 aa13.07□□□□□ -0.32
VPS50-215ENST00000480943 ANKK1Q8NFD2 765 aa13.07□□□□□ -0.32
VPS50-215ENST00000480943 LCE2BO14633 110 aa13.03□□□□□ -0.32
VPS50-215ENST00000480943 GPHNQ9NQX3 736 aaPredicted RBP13.03□□□□□ -0.32
VPS50-215ENST00000480943 NRG2O14511 850 aaPredicted RBP12.99□□□□□ -0.33
VPS50-215ENST00000480943 ZNF787Q6DD87 383 aa12.99□□□□□ -0.33
VPS50-215ENST00000480943 FOSBP53539 338 aa12.98□□□□□ -0.33
VPS50-215ENST00000480943 ECM2O94769 699 aaPredicted RBP12.97□□□□□ -0.33
VPS50-215ENST00000480943 PKD2Q13563 968 aa12.96□□□□□ -0.33
VPS50-215ENST00000480943 DSG2Q14126 1118 aa12.96□□□□□ -0.33
VPS50-215ENST00000480943 OXER1Q8TDS5 423 aa12.94□□□□□ -0.34
VPS50-215ENST00000480943 RABGEF1Q9UJ41 708 aa12.93□□□□□ -0.34
VPS50-215ENST00000480943 SOWAHBA6NEL2 793 aa12.92□□□□□ -0.34
VPS50-215ENST00000480943 PPP1R37O75864 691 aa12.92□□□□□ -0.34
VPS50-215ENST00000480943 LAPTM4BQ86VI4 370 aa12.91□□□□□ -0.34
VPS50-215ENST00000480943 JPH4Q96JJ6 628 aa12.91□□□□□ -0.34
VPS50-215ENST00000480943 ZDHHC16Q969W1 377 aa12.9□□□□□ -0.34
VPS50-215ENST00000480943 BCAMP50895 628 aa12.89□□□□□ -0.35
VPS50-215ENST00000480943 ZNF775Q96BV0 537 aaPredicted RBP12.88□□□□□ -0.35
VPS50-215ENST00000480943 UPF1Q92900 1129 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS50-215ENST00000480943 PPP1R3GB7ZBB8 358 aa12.84□□□□□ -0.35
VPS50-215ENST00000480943 RGL2O15211 777 aa12.84□□□□□ -0.35
VPS50-215ENST00000480943 WBP1LQ9NX94 342 aa12.83□□□□□ -0.36
VPS50-215ENST00000480943 ADAM33Q9BZ11 813 aa12.82□□□□□ -0.36
VPS50-215ENST00000480943 PRKD2Q9BZL6 878 aa12.82□□□□□ -0.36
VPS50-215ENST00000480943 ANO8Q9HCE9 1232 aaPredicted RBP12.81□□□□□ -0.36
VPS50-215ENST00000480943 V9GY48 417 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms