RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 KIAA2012Q0VF49 1180 aa11.25□□□□□ -0.61
SYNE1-224ENST00000478916 FGD1P98174 961 aa11.23□□□□□ -0.61
SYNE1-224ENST00000478916 OS9Q13438 667 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-224ENST00000478916 EFCAB2Q5VUJ9 269 aa11.23□□□□□ -0.61
SYNE1-224ENST00000478916 GOLGA2Q08379 1002 aa11.23□□□□□ -0.61
SYNE1-224ENST00000478916 FMN1Q68DA7 1419 aa11.22□□□□□ -0.61
SYNE1-224ENST00000478916 CC2D1BQ5T0F9 858 aaKnown RBP11.22□□□□□ -0.61
SYNE1-224ENST00000478916 ARID3AQ99856 593 aa11.21□□□□□ -0.61
SYNE1-224ENST00000478916 CCDC88BA6NC98 1476 aa11.21□□□□□ -0.62
SYNE1-224ENST00000478916 HDGFL2Q7Z4V5 671 aaPredicted RBP11.21□□□□□ -0.62
SYNE1-224ENST00000478916 GOLGA6L1Q8N7Z2 621 aa11.2□□□□□ -0.62
SYNE1-224ENST00000478916 KCNJ4P48050 445 aa11.2□□□□□ -0.62
SYNE1-224ENST00000478916 MORC1Q86VD1 984 aa11.19□□□□□ -0.62
SYNE1-224ENST00000478916 NOC3LQ8WTT2 800 aaKnown RBP11.19□□□□□ -0.62
SYNE1-224ENST00000478916 CFAP44Q96MT7 982 aa11.19□□□□□ -0.62
SYNE1-224ENST00000478916 MYO15BQ96JP2 1530 aa11.18□□□□□ -0.62
SYNE1-224ENST00000478916 TDRD9Q8NDG6 1382 aaKnown RBP11.18□□□□□ -0.62
SYNE1-224ENST00000478916 MCCP23508 829 aa11.18□□□□□ -0.62
SYNE1-224ENST00000478916 TAOK2Q9UL54 1235 aa11.18□□□□□ -0.62
SYNE1-224ENST00000478916 SOX12O15370 315 aa11.18□□□□□ -0.62
SYNE1-224ENST00000478916 SIN3AQ96ST3 1273 aa11.18□□□□□ -0.62
SYNE1-224ENST00000478916 GBP4Q96PP9 640 aa11.18□□□□□ -0.62
SYNE1-224ENST00000478916 NAP1L2Q9ULW6 460 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-224ENST00000478916 RTF1Q92541 710 aaKnown RBP11.18□□□□□ -0.62
SYNE1-224ENST00000478916 FRAT1Q92837 279 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-224ENST00000478916 ANKRD30AQ9BXX3 1397 aa11.17□□□□□ -0.62
SYNE1-224ENST00000478916 SAFB2Q14151 953 aaKnown RBP eCLIP11.17□□□□□ -0.62
SYNE1-224ENST00000478916 TIMELESSQ9UNS1 1208 aa11.17□□□□□ -0.62
SYNE1-224ENST00000478916 B4GALNT3Q6L9W6 998 aa11.17□□□□□ -0.62
SYNE1-224ENST00000478916 USP35Q9P2H5 1018 aa11.17□□□□□ -0.62
SYNE1-224ENST00000478916 RBM19Q9Y4C8 960 aaKnown RBP11.17□□□□□ -0.62
SYNE1-224ENST00000478916 MROH2BQ7Z745 1585 aa11.16□□□□□ -0.62
SYNE1-224ENST00000478916 SETQ01105 290 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-224ENST00000478916 STK26Q9P289 416 aa11.16□□□□□ -0.62
SYNE1-224ENST00000478916 HSP90AA2PQ14568 343 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-224ENST00000478916 EIF3AQ14152 1382 aaKnown RBP11.16□□□□□ -0.62
SYNE1-224ENST00000478916 EID1Q9Y6B2 187 aa11.16□□□□□ -0.62
SYNE1-224ENST00000478916 SETD5Q9C0A6 1442 aa11.16□□□□□ -0.62
SYNE1-224ENST00000478916 PKD2Q13563 968 aa11.15□□□□□ -0.62
SYNE1-224ENST00000478916 VPS8Q8N3P4 1428 aa11.15□□□□□ -0.62
SYNE1-224ENST00000478916 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-224ENST00000478916 CALRP27797 417 aaKnown RBP11.15□□□□□ -0.63
SYNE1-224ENST00000478916 CADPSQ9ULU8 1353 aa11.14□□□□□ -0.63
SYNE1-224ENST00000478916 CSB-PGBD3P0DP91 1061 aa11.14□□□□□ -0.63
SYNE1-224ENST00000478916 SPRYD3Q8NCJ5 442 aa11.14□□□□□ -0.63
SYNE1-224ENST00000478916 TOP2AP11388 1531 aaKnown RBP11.14□□□□□ -0.63
SYNE1-224ENST00000478916 SYAP1Q96A49 352 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-224ENST00000478916 RSPH6AQ9H0K4 717 aa11.13□□□□□ -0.63
SYNE1-224ENST00000478916 GOLGA6L3A6NEY3 463 aa11.12□□□□□ -0.63
SYNE1-224ENST00000478916 NUP155O75694 1391 aa11.12□□□□□ -0.63
SYNE1-224ENST00000478916 RSPH4AQ5TD94 716 aa11.12□□□□□ -0.63
SYNE1-224ENST00000478916 ABCC8Q09428 1581 aa11.12□□□□□ -0.63
SYNE1-224ENST00000478916 SENP3-EIF4A1A0A087X0R7 540 aa11.12□□□□□ -0.63
SYNE1-224ENST00000478916 CALD1Q05682 793 aaKnown RBP11.12□□□□□ -0.63
SYNE1-224ENST00000478916 CCDC18Q5T9S5 1454 aa11.12□□□□□ -0.63
SYNE1-224ENST00000478916 ROCK2O75116 1388 aaKnown RBP11.12□□□□□ -0.63
SYNE1-224ENST00000478916 TPM4P67936 248 aa11.11□□□□□ -0.63
SYNE1-224ENST00000478916 A0A0U1RQG5 324 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-224ENST00000478916 KTN1Q86UP2 1357 aaKnown RBP11.11□□□□□ -0.63
SYNE1-224ENST00000478916 CHMP4AQ9BY43 222 aa11.11□□□□□ -0.63
SYNE1-224ENST00000478916 GZF1Q9H116 711 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-224ENST00000478916 KIF3BO15066 747 aa11.1□□□□□ -0.63
SYNE1-224ENST00000478916 SPAG9O60271 1321 aaKnown RBP11.1□□□□□ -0.63
SYNE1-224ENST00000478916 CLSTN1O94985 981 aa11.1□□□□□ -0.63
SYNE1-224ENST00000478916 TMX4Q9H1E5 349 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-224ENST00000478916 RAPGEF2Q9Y4G8 1499 aa11.1□□□□□ -0.63
SYNE1-224ENST00000478916 HTATSF1O43719 755 aaKnown RBP11.09□□□□□ -0.63
SYNE1-224ENST00000478916 WASHC2CQ9Y4E1 1318 aa11.09□□□□□ -0.63
SYNE1-224ENST00000478916 GNL2Q13823 731 aaKnown RBP11.09□□□□□ -0.63
SYNE1-224ENST00000478916 NCBP3Q53F19 620 aaKnown RBP11.08□□□□□ -0.64
SYNE1-224ENST00000478916 VSIG10Q8N0Z9 540 aa11.08□□□□□ -0.64
SYNE1-224ENST00000478916 CCDC9Q9Y3X0 531 aaKnown RBP11.08□□□□□ -0.64
SYNE1-224ENST00000478916 TERF2IPQ9NYB0 399 aa11.07□□□□□ -0.64
SYNE1-224ENST00000478916 IPO8O15397 1037 aaKnown RBP11.06□□□□□ -0.64
SYNE1-224ENST00000478916 MPHOSPH9Q99550 1183 aa11.05□□□□□ -0.64
SYNE1-224ENST00000478916 JPH4Q96JJ6 628 aa11.05□□□□□ -0.64
SYNE1-224ENST00000478916 HNRNPMP52272 730 aaKnown RBP eCLIP11.04□□□□□ -0.64
SYNE1-224ENST00000478916 HSPA5P11021 654 aaKnown RBP11.04□□□□□ -0.64
SYNE1-224ENST00000478916 CSPP1Q1MSJ5 1256 aa11.03□□□□□ -0.64
SYNE1-224ENST00000478916 NGDNQ8NEJ9 315 aaKnown RBP11.03□□□□□ -0.64
SYNE1-224ENST00000478916 ZNF330Q9Y3S2 320 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-224ENST00000478916 KIAA1211Q6ZU35 1233 aa11.03□□□□□ -0.64
SYNE1-224ENST00000478916 U2AF1L5P0DN76 240 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-224ENST00000478916 U2AF1Q01081 240 aaKnown RBP eCLIP11.03□□□□□ -0.64
SYNE1-224ENST00000478916 WIZO95785 1651 aa11.03□□□□□ -0.64
SYNE1-224ENST00000478916 TCERG1O14776 1098 aaKnown RBP11.03□□□□□ -0.64
SYNE1-224ENST00000478916 ISY1Q9ULR0 285 aaKnown RBP11.03□□□□□ -0.64
SYNE1-224ENST00000478916 FOXD1Q16676 465 aa11.02□□□□□ -0.64
SYNE1-224ENST00000478916 SLKQ9H2G2 1235 aaPredicted RBP11.02□□□□□ -0.64
SYNE1-224ENST00000478916 FHOD3Q2V2M9 1422 aa11.02□□□□□ -0.64
SYNE1-224ENST00000478916 PHF14O94880 888 aa11.02□□□□□ -0.64
SYNE1-224ENST00000478916 RALBP1Q15311 655 aa11.02□□□□□ -0.65
SYNE1-224ENST00000478916 FANCD2Q9BXW9 1451 aa11.02□□□□□ -0.65
SYNE1-224ENST00000478916 ATAD2BQ9ULI0 1458 aa11.02□□□□□ -0.65
SYNE1-224ENST00000478916 KANK4Q5T7N3 995 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-224ENST00000478916 ZNF771Q7L3S4 317 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-224ENST00000478916 IPO9Q96P70 1041 aaKnown RBP11.01□□□□□ -0.65
SYNE1-224ENST00000478916 OSCARQ8IYS5 282 aa11.01□□□□□ -0.65
SYNE1-224ENST00000478916 UACAQ9BZF9 1416 aa11.01□□□□□ -0.65
SYNE1-224ENST00000478916 HDAC5Q9UQL6 1122 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms