RNA–Protein interactions for RNA: ENST00000478913.1

CCDC171-207, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-207ENST00000478913 POTEB3A0JP26 581 aa12.23□□□□□ -0.45
CCDC171-207ENST00000478913 POTEBQ6S5H4 581 aa12.23□□□□□ -0.45
CCDC171-207ENST00000478913 VSIG10Q8N0Z9 540 aa12.21□□□□□ -0.45
CCDC171-207ENST00000478913 KRTAP3-3Q9BYR6 98 aa12.2□□□□□ -0.46
CCDC171-207ENST00000478913 KRTAP3-2Q9BYR7 98 aa12.2□□□□□ -0.46
CCDC171-207ENST00000478913 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.2□□□□□ -0.46
CCDC171-207ENST00000478913 MS4A4AQ96JQ5 239 aa12.17□□□□□ -0.46
CCDC171-207ENST00000478913 PPP1R37O75864 691 aa12.15□□□□□ -0.46
CCDC171-207ENST00000478913 ILDR1Q86SU0 546 aaPredicted RBP12.13□□□□□ -0.47
CCDC171-207ENST00000478913 OCEL1Q9H607 264 aa12.13□□□□□ -0.47
CCDC171-207ENST00000478913 KDM2AQ9Y2K7 1162 aa12.12□□□□□ -0.47
CCDC171-207ENST00000478913 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.1□□□□□ -0.47
CCDC171-207ENST00000478913 SNPHO15079 494 aa12.09□□□□□ -0.47
CCDC171-207ENST00000478913 PDCD7Q8N8D1 485 aaKnown RBP12.07□□□□□ -0.48
CCDC171-207ENST00000478913 HS3ST6Q96QI5 342 aa12.07□□□□□ -0.48
CCDC171-207ENST00000478913 EMP3P54852 163 aa12.06□□□□□ -0.48
CCDC171-207ENST00000478913 DPY19L2Q6NUT2 758 aa12.05□□□□□ -0.48
CCDC171-207ENST00000478913 CADPS2Q86UW7 1296 aa12.05□□□□□ -0.48
CCDC171-207ENST00000478913 FAM205CA6NFA0 338 aa12.02□□□□□ -0.49
CCDC171-207ENST00000478913 G3V3G9 751 aa12.01□□□□□ -0.49
CCDC171-207ENST00000478913 MICALL2Q8IY33 904 aa11.98□□□□□ -0.49
CCDC171-207ENST00000478913 WDR70Q9NW82 654 aa11.97□□□□□ -0.49
CCDC171-207ENST00000478913 BOLA1Q9Y3E2 137 aa11.97□□□□□ -0.49
CCDC171-207ENST00000478913 L3MBTL3Q96JM7 780 aaPredicted RBP11.96□□□□□ -0.49
CCDC171-207ENST00000478913 PDE4AP27815 886 aa11.92□□□□□ -0.5
CCDC171-207ENST00000478913 NCKAP5LQ9HCH0 1330 aa11.91□□□□□ -0.5
CCDC171-207ENST00000478913 CRISPLD2Q9H0B8 497 aa11.9□□□□□ -0.5
CCDC171-207ENST00000478913 C3orf67Q6ZVT6 689 aa11.89□□□□□ -0.51
CCDC171-207ENST00000478913 LARP6Q9BRS8 491 aaKnown RBP11.89□□□□□ -0.51
CCDC171-207ENST00000478913 HOXB3P14651 431 aaPredicted RBP11.86□□□□□ -0.51
CCDC171-207ENST00000478913 P3H3Q8IVL6 736 aa11.85□□□□□ -0.51
CCDC171-207ENST00000478913 TMC2Q8TDI7 906 aa11.85□□□□□ -0.51
CCDC171-207ENST00000478913 DDX27Q96GQ7 796 aaKnown RBP11.85□□□□□ -0.51
CCDC171-207ENST00000478913 MFSD10Q14728 455 aa11.84□□□□□ -0.51
CCDC171-207ENST00000478913 BCANQ96GW7 911 aa11.84□□□□□ -0.51
CCDC171-207ENST00000478913 GPHNQ9NQX3 736 aaPredicted RBP11.84□□□□□ -0.51
CCDC171-207ENST00000478913 E2F4Q16254 413 aa11.8□□□□□ -0.52
CCDC171-207ENST00000478913 PPP1R15BQ5SWA1 713 aa11.8□□□□□ -0.52
CCDC171-207ENST00000478913 KCNV2Q8TDN2 545 aa11.79□□□□□ -0.52
CCDC171-207ENST00000478913 C2orf72A6NCS6 295 aa11.78□□□□□ -0.52
CCDC171-207ENST00000478913 NBR1Q14596 966 aa11.78□□□□□ -0.52
CCDC171-207ENST00000478913 ABCC9O60706 1549 aa11.77□□□□□ -0.52
CCDC171-207ENST00000478913 RNF166Q96A37 237 aaPredicted RBP11.77□□□□□ -0.53
CCDC171-207ENST00000478913 KIF3CO14782 793 aa11.76□□□□□ -0.53
CCDC171-207ENST00000478913 DSG2Q14126 1118 aa11.76□□□□□ -0.53
CCDC171-207ENST00000478913 TMEM92Q6UXU6 159 aa11.76□□□□□ -0.53
CCDC171-207ENST00000478913 FOXK1P85037 733 aa11.75□□□□□ -0.53
CCDC171-207ENST00000478913 HOXB1P14653 301 aaPredicted RBP11.74□□□□□ -0.53
CCDC171-207ENST00000478913 PLPP6Q8IY26 295 aa11.72□□□□□ -0.53
CCDC171-207ENST00000478913 CAMK2BQ13554 666 aa11.71□□□□□ -0.53
CCDC171-207ENST00000478913 ARHGEF1Q92888 912 aaKnown RBP11.7□□□□□ -0.54
CCDC171-207ENST00000478913 ERBB3P21860 1342 aa11.67□□□□□ -0.54
CCDC171-207ENST00000478913 MYT1LQ9UL68 1186 aa11.66□□□□□ -0.54
CCDC171-207ENST00000478913 VARS2Q5ST30 1063 aaKnown RBP11.64□□□□□ -0.55
CCDC171-207ENST00000478913 EMILIN3Q9NT22 766 aa11.63□□□□□ -0.55
CCDC171-207ENST00000478913 ARIH1Q9Y4X5 557 aaPredicted RBP11.63□□□□□ -0.55
CCDC171-207ENST00000478913 DPYSL4O14531 572 aa11.6□□□□□ -0.55
CCDC171-207ENST00000478913 ZNF710Q8N1W2 664 aa11.6□□□□□ -0.55
CCDC171-207ENST00000478913 UPF1Q92900 1129 aaKnown RBP eCLIP11.59□□□□□ -0.55
CCDC171-207ENST00000478913 MAP3K9P80192 1104 aa11.56□□□□□ -0.56
CCDC171-207ENST00000478913 DOK7Q18PE1 504 aa11.55□□□□□ -0.56
CCDC171-207ENST00000478913 OXER1Q8TDS5 423 aa11.55□□□□□ -0.56
CCDC171-207ENST00000478913 SEMA3EO15041 775 aa11.54□□□□□ -0.56
CCDC171-207ENST00000478913 ZNF687Q8N1G0 1237 aa11.54□□□□□ -0.56
CCDC171-207ENST00000478913 SPDYE16A6NNV3 312 aaPredicted RBP11.53□□□□□ -0.56
CCDC171-207ENST00000478913 SLC34A2O95436 690 aa11.53□□□□□ -0.56
CCDC171-207ENST00000478913 PDIA6Q15084 440 aa11.52□□□□□ -0.57
CCDC171-207ENST00000478913 TULP1O00294 542 aaPredicted RBP11.51□□□□□ -0.57
CCDC171-207ENST00000478913 TBC1D12O60347 775 aa11.51□□□□□ -0.57
CCDC171-207ENST00000478913 PTCD2Q8WV60 388 aaKnown RBP11.51□□□□□ -0.57
CCDC171-207ENST00000478913 TESPA1A2RU30 521 aaPredicted RBP11.5□□□□□ -0.57
CCDC171-207ENST00000478913 GPR153Q6NV75 609 aa11.49□□□□□ -0.57
CCDC171-207ENST00000478913 ZNF316A6NFI3 1004 aaPredicted RBP11.48□□□□□ -0.57
CCDC171-207ENST00000478913 SMYD5Q6GMV2 418 aa11.47□□□□□ -0.57
CCDC171-207ENST00000478913 RIMBP2O15034 1052 aa11.46□□□□□ -0.57
CCDC171-207ENST00000478913 EVI5O60447 810 aa11.45□□□□□ -0.58
CCDC171-207ENST00000478913 PCDHGA4Q9Y5G9 962 aa11.45□□□□□ -0.58
CCDC171-207ENST00000478913 MLLT3P42568 568 aaPredicted RBP11.43□□□□□ -0.58
CCDC171-207ENST00000478913 LMOD2Q6P5Q4 547 aa11.43□□□□□ -0.58
CCDC171-207ENST00000478913 ANKRD13DQ6ZTN6 518 aa11.42□□□□□ -0.58
CCDC171-207ENST00000478913 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.42□□□□□ -0.58
CCDC171-207ENST00000478913 TPRNQ4KMQ1 711 aa11.4□□□□□ -0.58
CCDC171-207ENST00000478913 ZSWIM6Q9HCJ5 1215 aa11.4□□□□□ -0.58
CCDC171-207ENST00000478913 GRXCR2A6NFK2 248 aa11.39□□□□□ -0.59
CCDC171-207ENST00000478913 KHSRPQ92945 711 aaKnown RBP eCLIP11.39□□□□□ -0.59
CCDC171-207ENST00000478913 PTGER2P43116 358 aa11.38□□□□□ -0.59
CCDC171-207ENST00000478913 ARSIQ5FYB1 569 aa11.38□□□□□ -0.59
CCDC171-207ENST00000478913 DDX12PQ92771 950 aa11.38□□□□□ -0.59
CCDC171-207ENST00000478913 ANO8Q9HCE9 1232 aaPredicted RBP11.36□□□□□ -0.59
CCDC171-207ENST00000478913 NUDT7P0C024 238 aa11.35□□□□□ -0.59
CCDC171-207ENST00000478913 PRKCSHP14314 528 aaPredicted RBP11.33□□□□□ -0.6
CCDC171-207ENST00000478913 POTEEQ6S8J3 1075 aa11.33□□□□□ -0.6
CCDC171-207ENST00000478913 LSM11P83369 360 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC171-207ENST00000478913 RBM26Q5T8P6 1007 aaKnown RBP11.32□□□□□ -0.6
CCDC171-207ENST00000478913 PLA2G2EQ9NZK7 142 aa11.32□□□□□ -0.6
CCDC171-207ENST00000478913 KDM4FA0A1W2PPD8 638 aa11.31□□□□□ -0.6
CCDC171-207ENST00000478913 PHF14O94880 888 aa11.29□□□□□ -0.6
CCDC171-207ENST00000478913 OSBPP22059 807 aa11.29□□□□□ -0.6
CCDC171-207ENST00000478913 GPIHBP1Q8IV16 184 aa11.28□□□□□ -0.6
CCDC171-207ENST00000478913 JPH4Q96JJ6 628 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms