RNA–Protein interactions for RNA: ENST00000478349.6

SMARCE1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 1,090 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-209ENST00000478349 SCAPERQ9BY12 1400 aa23.49■■□□□ 1.35
SMARCE1-209ENST00000478349 PTPRMP28827 1452 aa23.49■■□□□ 1.35
SMARCE1-209ENST00000478349 CASKIN1Q8WXD9 1431 aa23.48■■□□□ 1.35
SMARCE1-209ENST00000478349 ADAMTSL3P82987 1691 aa23.48■■□□□ 1.35
SMARCE1-209ENST00000478349 BCORL1Q5H9F3 1711 aa23.45■■□□□ 1.34
SMARCE1-209ENST00000478349 MYO5CQ9NQX4 1742 aa23.45■■□□□ 1.34
SMARCE1-209ENST00000478349 ARHGAP5Q13017 1502 aa23.43■■□□□ 1.34
SMARCE1-209ENST00000478349 FYCO1Q9BQS8 1478 aa23.43■■□□□ 1.34
SMARCE1-209ENST00000478349 PCF11O94913 1555 aaKnown RBP23.42■■□□□ 1.34
SMARCE1-209ENST00000478349 ZNF518AQ6AHZ1 1483 aa23.42■■□□□ 1.34
SMARCE1-209ENST00000478349 YEATS2Q9ULM3 1422 aa23.4■■□□□ 1.34
SMARCE1-209ENST00000478349 MADDQ8WXG6 1647 aa23.39■■□□□ 1.33
SMARCE1-209ENST00000478349 C9orf84Q5VXU9 1444 aa23.36■■□□□ 1.33
SMARCE1-209ENST00000478349 ATP10AO60312 1499 aa23.35■■□□□ 1.33
SMARCE1-209ENST00000478349 MYT1LQ9UL68 1186 aa23.32■■□□□ 1.32
SMARCE1-209ENST00000478349 KDM5CP41229 1560 aa23.3■■□□□ 1.32
SMARCE1-209ENST00000478349 LRRIQ1Q96JM4 1722 aa23.3■■□□□ 1.32
SMARCE1-209ENST00000478349 PREX2Q70Z35 1606 aa23.3■■□□□ 1.32
SMARCE1-209ENST00000478349 RIMS1Q86UR5 1692 aaKnown RBP23.29■■□□□ 1.32
SMARCE1-209ENST00000478349 MLECQ14165 292 aa23.27■■□□□ 1.32
SMARCE1-209ENST00000478349 ABCC1P33527 1531 aa23.25■■□□□ 1.31
SMARCE1-209ENST00000478349 AFAP1Q8N556 730 aa23.25■■□□□ 1.31
SMARCE1-209ENST00000478349 MLH3Q9UHC1 1453 aa23.24■■□□□ 1.31
SMARCE1-209ENST00000478349 LMTK3Q96Q04 1460 aa23.23■■□□□ 1.31
SMARCE1-209ENST00000478349 ARHGEF12Q9NZN5 1544 aa23.22■■□□□ 1.31
SMARCE1-209ENST00000478349 MTUS2Q5JR59 1369 aa23.21■■□□□ 1.31
SMARCE1-209ENST00000478349 REREQ9P2R6 1566 aa23.21■■□□□ 1.31
SMARCE1-209ENST00000478349 CDC42BPBQ9Y5S2 1711 aa23.21■■□□□ 1.31
SMARCE1-209ENST00000478349 ILDR1Q86SU0 546 aaPredicted RBP23.2■■□□□ 1.3
SMARCE1-209ENST00000478349 FER1L4A9Z1Z3 1794 aa23.19■■□□□ 1.3
SMARCE1-209ENST00000478349 PLPPR3Q6T4P5 718 aa23.19■■□□□ 1.3
SMARCE1-209ENST00000478349 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
SMARCE1-209ENST00000478349 PLEKHH2Q8IVE3 1493 aa23.18■■□□□ 1.3
SMARCE1-209ENST00000478349 SIGLEC1Q9BZZ2 1709 aa23.18■■□□□ 1.3
SMARCE1-209ENST00000478349 TRAPPC8Q9Y2L5 1435 aa23.17■■□□□ 1.3
SMARCE1-209ENST00000478349 CCNB3Q8WWL7 1395 aa23.17■■□□□ 1.3
SMARCE1-209ENST00000478349 ITSN2Q9NZM3 1697 aa23.16■■□□□ 1.3
SMARCE1-209ENST00000478349 ESF1Q9H501 851 aaKnown RBP23.16■■□□□ 1.3
SMARCE1-209ENST00000478349 ZNF777Q9ULD5 760 aaPredicted RBP23.16■■□□□ 1.3
SMARCE1-209ENST00000478349 CEP162Q5TB80 1403 aa23.15■■□□□ 1.3
SMARCE1-209ENST00000478349 GPATCH8Q9UKJ3 1502 aaKnown RBP23.14■■□□□ 1.3
SMARCE1-209ENST00000478349 CFDP1Q9UEE9 299 aaPredicted RBP23.14■■□□□ 1.29
SMARCE1-209ENST00000478349 CDC42BPAQ5VT25 1732 aa23.13■■□□□ 1.29
SMARCE1-209ENST00000478349 AGLP35573 1532 aa23.13■■□□□ 1.29
SMARCE1-209ENST00000478349 ABCA6Q8N139 1617 aa23.12■■□□□ 1.29
SMARCE1-209ENST00000478349 KIAA1107Q9UPP5 1409 aa23.12■■□□□ 1.29
SMARCE1-209ENST00000478349 EHBP1L1Q8N3D4 1523 aa23.11■■□□□ 1.29
SMARCE1-209ENST00000478349 SPAG9O60271 1321 aaKnown RBP23.1■■□□□ 1.29
SMARCE1-209ENST00000478349 SYCP2Q9BX26 1530 aa23.1■■□□□ 1.29
SMARCE1-209ENST00000478349 SAMD9LQ8IVG5 1584 aa23.09■■□□□ 1.29
SMARCE1-209ENST00000478349 CNTLNQ9NXG0 1405 aa23.08■■□□□ 1.28
SMARCE1-209ENST00000478349 HSPA2P54652 639 aa23.06■■□□□ 1.28
SMARCE1-209ENST00000478349 UHRF1BP1Q6BDS2 1440 aa23.04■■□□□ 1.28
SMARCE1-209ENST00000478349 KIDINS220Q9ULH0 1771 aa23.04■■□□□ 1.28
SMARCE1-209ENST00000478349 HNRNPMP52272 730 aaKnown RBP eCLIP23.03■■□□□ 1.28
SMARCE1-209ENST00000478349 PREX1Q8TCU6 1659 aa23.03■■□□□ 1.28
SMARCE1-209ENST00000478349 FBXO41Q8TF61 875 aa23.02■■□□□ 1.28
SMARCE1-209ENST00000478349 ATP7AQ04656 1500 aa23.02■■□□□ 1.28
SMARCE1-209ENST00000478349 CEBPAP49715 358 aaPredicted RBP23.01■■□□□ 1.27
SMARCE1-209ENST00000478349 TIAM1Q13009 1591 aa22.99■■□□□ 1.27
SMARCE1-209ENST00000478349 INO80Q9ULG1 1556 aaPredicted RBP22.97■■□□□ 1.27
SMARCE1-209ENST00000478349 DMRT2Q9Y5R5 561 aa22.97■■□□□ 1.27
SMARCE1-209ENST00000478349 A2MP01023 1474 aa22.96■■□□□ 1.27
SMARCE1-209ENST00000478349 VPS8Q8N3P4 1428 aa22.93■■□□□ 1.26
SMARCE1-209ENST00000478349 SUPT6HQ7KZ85 1726 aaKnown RBP22.92■■□□□ 1.26
SMARCE1-209ENST00000478349 PLXNC1O60486 1568 aa22.92■■□□□ 1.26
SMARCE1-209ENST00000478349 NCOA2Q15596 1464 aa22.92■■□□□ 1.26
SMARCE1-209ENST00000478349 RTEL1-TNFRSF6BF6WH68 1400 aa22.91■■□□□ 1.26
SMARCE1-209ENST00000478349 NPATQ14207 1427 aa22.91■■□□□ 1.26
SMARCE1-209ENST00000478349 RSPH4AQ5TD94 716 aa22.91■■□□□ 1.26
SMARCE1-209ENST00000478349 C3P01024 1663 aa22.9■■□□□ 1.26
SMARCE1-209ENST00000478349 PPP6R1Q9UPN7 881 aa22.9■■□□□ 1.26
SMARCE1-209ENST00000478349 MBD5Q9P267 1494 aa22.89■■□□□ 1.25
SMARCE1-209ENST00000478349 MROH2AA6NES4 1674 aa22.88■■□□□ 1.25
SMARCE1-209ENST00000478349 CCDC141Q6ZP82 1450 aa22.88■■□□□ 1.25
SMARCE1-209ENST00000478349 ZNF644Q9H582 1327 aaPredicted RBP22.87■■□□□ 1.25
SMARCE1-209ENST00000478349 SETD1BQ9UPS6 1966 aaKnown RBP22.87■■□□□ 1.25
SMARCE1-209ENST00000478349 ADGBQ8N7X0 1667 aa22.87■■□□□ 1.25
SMARCE1-209ENST00000478349 ZMYM3Q14202 1370 aa22.86■■□□□ 1.25
SMARCE1-209ENST00000478349 CAMSAP2Q08AD1 1489 aa22.85■■□□□ 1.25
SMARCE1-209ENST00000478349 GGT6Q6P531 493 aa22.84■■□□□ 1.25
SMARCE1-209ENST00000478349 LRRC9Q6ZRR7 1453 aa22.82■■□□□ 1.24
SMARCE1-209ENST00000478349 MAP3K1Q13233 1512 aa22.82■■□□□ 1.24
SMARCE1-209ENST00000478349 DHX29Q7Z478 1369 aaKnown RBP22.81■■□□□ 1.24
SMARCE1-209ENST00000478349 CERKQ8TCT0 537 aa22.81■■□□□ 1.24
SMARCE1-209ENST00000478349 LOC105371045A0A1W2PR82 267 aa22.8■■□□□ 1.24
SMARCE1-209ENST00000478349 TSPY4P0CV99 314 aa22.8■■□□□ 1.24
SMARCE1-209ENST00000478349 TSPY10P0CW01 314 aa22.8■■□□□ 1.24
SMARCE1-209ENST00000478349 PTPRTO14522 1441 aa22.8■■□□□ 1.24
SMARCE1-209ENST00000478349 FAM135AQ9P2D6 1515 aa22.79■■□□□ 1.24
SMARCE1-209ENST00000478349 ARHGEF5Q12774 1597 aa22.77■■□□□ 1.24
SMARCE1-209ENST00000478349 NCOA1Q15788 1441 aa22.76■■□□□ 1.23
SMARCE1-209ENST00000478349 APLP2Q06481 763 aa22.76■■□□□ 1.23
SMARCE1-209ENST00000478349 CLTCQ00610 1675 aaKnown RBP22.76■■□□□ 1.23
SMARCE1-209ENST00000478349 PTPRKQ15262 1439 aa22.74■■□□□ 1.23
SMARCE1-209ENST00000478349 KIF3BO15066 747 aa22.73■■□□□ 1.23
SMARCE1-209ENST00000478349 MIA2Q96PC5 1412 aa22.73■■□□□ 1.23
SMARCE1-209ENST00000478349 STRCQ7RTU9 1775 aa22.72■■□□□ 1.23
SMARCE1-209ENST00000478349 MYOM3Q5VTT5 1437 aa22.71■■□□□ 1.23
SMARCE1-209ENST00000478349 KDM5DQ9BY66 1539 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms