RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 SCAPERQ9BY12 1400 aa28.27■■■□□ 2.12
PTPN7-209ENST00000477554 PREX2Q70Z35 1606 aa28.26■■■□□ 2.12
PTPN7-209ENST00000477554 EFCAB2Q5VUJ9 269 aa28.23■■■□□ 2.11
PTPN7-209ENST00000477554 VPS8Q8N3P4 1428 aa28.22■■■□□ 2.11
PTPN7-209ENST00000477554 POGZQ7Z3K3 1410 aa28.21■■■□□ 2.11
PTPN7-209ENST00000477554 SIGLEC1Q9BZZ2 1709 aa28.21■■■□□ 2.11
PTPN7-209ENST00000477554 YEATS2Q9ULM3 1422 aa28.2■■■□□ 2.11
PTPN7-209ENST00000477554 ARHGEF12Q9NZN5 1544 aa28.19■■■□□ 2.1
PTPN7-209ENST00000477554 MTUS2Q5JR59 1369 aa28.18■■■□□ 2.1
PTPN7-209ENST00000477554 ZMYM4Q5VZL5 1548 aa28.18■■■□□ 2.1
PTPN7-209ENST00000477554 ARHGEF40Q8TER5 1519 aa28.18■■■□□ 2.1
PTPN7-209ENST00000477554 GPATCH8Q9UKJ3 1502 aaKnown RBP28.18■■■□□ 2.1
PTPN7-209ENST00000477554 TIAM1Q13009 1591 aa28.15■■■□□ 2.1
PTPN7-209ENST00000477554 AFAP1Q8N556 730 aa28.14■■■□□ 2.1
PTPN7-209ENST00000477554 ABCC1P33527 1531 aa28.13■■■□□ 2.09
PTPN7-209ENST00000477554 EHBP1L1Q8N3D4 1523 aa28.13■■■□□ 2.09
PTPN7-209ENST00000477554 SAMD9LQ8IVG5 1584 aa28.13■■■□□ 2.09
PTPN7-209ENST00000477554 TRAPPC8Q9Y2L5 1435 aa28.12■■■□□ 2.09
PTPN7-209ENST00000477554 ZFYVE16Q7Z3T8 1539 aa28.11■■■□□ 2.09
PTPN7-209ENST00000477554 ITSN2Q9NZM3 1697 aa28.11■■■□□ 2.09
PTPN7-209ENST00000477554 ZNF777Q9ULD5 760 aaPredicted RBP28.09■■■□□ 2.09
PTPN7-209ENST00000477554 KDM5CP41229 1560 aa28.07■■■□□ 2.08
PTPN7-209ENST00000477554 KANK4Q5T7N3 995 aaPredicted RBP28.07■■■□□ 2.08
PTPN7-209ENST00000477554 CCNB3Q8WWL7 1395 aa28.06■■■□□ 2.08
PTPN7-209ENST00000477554 ZNF518AQ6AHZ1 1483 aa28.05■■■□□ 2.08
PTPN7-209ENST00000477554 SYCP2Q9BX26 1530 aa28.04■■■□□ 2.08
PTPN7-209ENST00000477554 ZNF644Q9H582 1327 aaPredicted RBP28.04■■■□□ 2.08
PTPN7-209ENST00000477554 BCORL1Q5H9F3 1711 aa28.03■■■□□ 2.08
PTPN7-209ENST00000477554 NCOA2Q15596 1464 aa28.03■■■□□ 2.08
PTPN7-209ENST00000477554 ADAMTSL3P82987 1691 aa28.03■■■□□ 2.08
PTPN7-209ENST00000477554 MAGI2Q86UL8 1455 aa28.02■■■□□ 2.08
PTPN7-209ENST00000477554 ARID4BQ4LE39 1312 aaPredicted RBP28.02■■■□□ 2.08
PTPN7-209ENST00000477554 LRRC9Q6ZRR7 1453 aa28.01■■■□□ 2.07
PTPN7-209ENST00000477554 HNRNPMP52272 730 aaKnown RBP eCLIP28.01■■■□□ 2.07
PTPN7-209ENST00000477554 CFDP1Q9UEE9 299 aaPredicted RBP28.01■■■□□ 2.07
PTPN7-209ENST00000477554 HECW2Q9P2P5 1572 aa27.99■■■□□ 2.07
PTPN7-209ENST00000477554 SUPT6HQ7KZ85 1726 aaKnown RBP27.99■■■□□ 2.07
PTPN7-209ENST00000477554 ABCA6Q8N139 1617 aa27.99■■■□□ 2.07
PTPN7-209ENST00000477554 MADDQ8WXG6 1647 aa27.98■■■□□ 2.07
PTPN7-209ENST00000477554 DIP2CQ9Y2E4 1556 aa27.97■■■□□ 2.07
PTPN7-209ENST00000477554 KIDINS220Q9ULH0 1771 aa27.95■■■□□ 2.07
PTPN7-209ENST00000477554 ATP10AO60312 1499 aa27.94■■■□□ 2.06
PTPN7-209ENST00000477554 MLH3Q9UHC1 1453 aa27.92■■■□□ 2.06
PTPN7-209ENST00000477554 MAP3K1Q13233 1512 aa27.92■■■□□ 2.06
PTPN7-209ENST00000477554 MLECQ14165 292 aa27.92■■■□□ 2.06
PTPN7-209ENST00000477554 MYT1LQ9UL68 1186 aa27.92■■■□□ 2.06
PTPN7-209ENST00000477554 C9orf84Q5VXU9 1444 aa27.92■■■□□ 2.06
PTPN7-209ENST00000477554 RIMS1Q86UR5 1692 aaKnown RBP27.88■■■□□ 2.05
PTPN7-209ENST00000477554 PTPRMP28827 1452 aa27.88■■■□□ 2.05
PTPN7-209ENST00000477554 MBD5Q9P267 1494 aa27.88■■■□□ 2.05
PTPN7-209ENST00000477554 KIAA1107Q9UPP5 1409 aa27.88■■■□□ 2.05
PTPN7-209ENST00000477554 CAMSAP2Q08AD1 1489 aa27.84■■■□□ 2.05
PTPN7-209ENST00000477554 INO80Q9ULG1 1556 aaPredicted RBP27.83■■■□□ 2.05
PTPN7-209ENST00000477554 PLEKHH2Q8IVE3 1493 aa27.83■■■□□ 2.05
PTPN7-209ENST00000477554 SPAG9O60271 1321 aaKnown RBP27.81■■■□□ 2.04
PTPN7-209ENST00000477554 ATP7AQ04656 1500 aa27.81■■■□□ 2.04
PTPN7-209ENST00000477554 REREQ9P2R6 1566 aa27.79■■■□□ 2.04
PTPN7-209ENST00000477554 FER1L4A9Z1Z3 1794 aa27.79■■■□□ 2.04
PTPN7-209ENST00000477554 PLPPR3Q6T4P5 718 aa27.78■■■□□ 2.04
PTPN7-209ENST00000477554 MYOM3Q5VTT5 1437 aa27.74■■■□□ 2.03
PTPN7-209ENST00000477554 APLP2Q06481 763 aa27.72■■■□□ 2.03
PTPN7-209ENST00000477554 AGLP35573 1532 aa27.7■■■□□ 2.02
PTPN7-209ENST00000477554 CCDC141Q6ZP82 1450 aa27.7■■■□□ 2.02
PTPN7-209ENST00000477554 PLXNC1O60486 1568 aa27.69■■■□□ 2.02
PTPN7-209ENST00000477554 CEBPAP49715 358 aaPredicted RBP27.67■■■□□ 2.02
PTPN7-209ENST00000477554 ADGBQ8N7X0 1667 aa27.67■■■□□ 2.02
PTPN7-209ENST00000477554 ARHGEF5Q12774 1597 aa27.66■■■□□ 2.02
PTPN7-209ENST00000477554 A2MP01023 1474 aa27.66■■■□□ 2.02
PTPN7-209ENST00000477554 MIA2Q96PC5 1412 aa27.63■■■□□ 2.01
PTPN7-209ENST00000477554 RTEL1-TNFRSF6BF6WH68 1400 aa27.61■■■□□ 2.01
PTPN7-209ENST00000477554 PTPN23Q9H3S7 1636 aa27.61■■■□□ 2.01
PTPN7-209ENST00000477554 PPARGC1BQ86YN6 1023 aaKnown RBP27.6■■■□□ 2.01
PTPN7-209ENST00000477554 LMTK3Q96Q04 1460 aa27.57■■■□□ 2
PTPN7-209ENST00000477554 FGD6Q6ZV73 1430 aa27.57■■■□□ 2
PTPN7-209ENST00000477554 C3P01024 1663 aa27.56■■■□□ 2
PTPN7-209ENST00000477554 DHX29Q7Z478 1369 aaKnown RBP27.53■■■□□ 2
PTPN7-209ENST00000477554 MAST1Q9Y2H9 1570 aa27.52■■■□□ 2
PTPN7-209ENST00000477554 RSPH4AQ5TD94 716 aa27.52■■■□□ 2
PTPN7-209ENST00000477554 TCOF1Q13428 1488 aaKnown RBP27.52■■■□□ 2
PTPN7-209ENST00000477554 ABCC5O15440 1437 aa27.52■■■□□ 2
PTPN7-209ENST00000477554 GGT6Q6P531 493 aa27.51■■□□□ 1.99
PTPN7-209ENST00000477554 CLTCQ00610 1675 aaKnown RBP27.51■■□□□ 1.99
PTPN7-209ENST00000477554 CROCC2H7BZ55 1655 aa27.5■■□□□ 1.99
PTPN7-209ENST00000477554 TSPY4P0CV99 314 aa27.5■■□□□ 1.99
PTPN7-209ENST00000477554 TSPY10P0CW01 314 aa27.5■■□□□ 1.99
PTPN7-209ENST00000477554 HSPA2P54652 639 aa27.49■■□□□ 1.99
PTPN7-209ENST00000477554 DNMT1P26358 1616 aaKnown RBP27.46■■□□□ 1.99
PTPN7-209ENST00000477554 DAPK1P53355 1430 aa27.46■■□□□ 1.99
PTPN7-209ENST00000477554 KIF3BO15066 747 aa27.45■■□□□ 1.98
PTPN7-209ENST00000477554 ESF1Q9H501 851 aaKnown RBP27.41■■□□□ 1.98
PTPN7-209ENST00000477554 MROH2AA6NES4 1674 aa27.41■■□□□ 1.98
PTPN7-209ENST00000477554 ZMYM3Q14202 1370 aa27.41■■□□□ 1.98
PTPN7-209ENST00000477554 PREX1Q8TCU6 1659 aa27.41■■□□□ 1.98
PTPN7-209ENST00000477554 CHIC2Q9UKJ5 165 aa27.4■■□□□ 1.98
PTPN7-209ENST00000477554 CNTLNQ9NXG0 1405 aa27.4■■□□□ 1.98
PTPN7-209ENST00000477554 SHANK2Q9UPX8 1470 aa27.39■■□□□ 1.97
PTPN7-209ENST00000477554 FAM50AQ14320 339 aaKnown RBP27.38■■□□□ 1.97
PTPN7-209ENST00000477554 RRP7BPQ9NSQ0 103 aa27.37■■□□□ 1.97
PTPN7-209ENST00000477554 MROH1Q8NDA8 1641 aa27.34■■□□□ 1.97
PTPN7-209ENST00000477554 KIF15Q9NS87 1388 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms