RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 ZSWIM6Q9HCJ5 1215 aa9.98□□□□□ -0.81
PTCD3-212ENST00000477520 SOX12O15370 315 aa9.97□□□□□ -0.81
PTCD3-212ENST00000477520 ZNF687Q8N1G0 1237 aa9.97□□□□□ -0.81
PTCD3-212ENST00000477520 MYT1LQ9UL68 1186 aa9.94□□□□□ -0.82
PTCD3-212ENST00000477520 ARSIQ5FYB1 569 aa9.93□□□□□ -0.82
PTCD3-212ENST00000477520 VGFO15240 615 aaPredicted RBP9.92□□□□□ -0.82
PTCD3-212ENST00000477520 KHSRPQ92945 711 aaKnown RBP eCLIP9.92□□□□□ -0.821e-8■□□□□ 10.5
PTCD3-212ENST00000477520 FBXO22Q8NEZ5 403 aa9.88□□□□□ -0.83
PTCD3-212ENST00000477520 ZNF316A6NFI3 1004 aaPredicted RBP9.85□□□□□ -0.83
PTCD3-212ENST00000477520 ANKRD13DQ6ZTN6 518 aa9.85□□□□□ -0.83
PTCD3-212ENST00000477520 NLRP6P59044 892 aa9.84□□□□□ -0.83
PTCD3-212ENST00000477520 BCL11BQ9C0K0 894 aaPredicted RBP9.84□□□□□ -0.83
PTCD3-212ENST00000477520 KIF3CO14782 793 aa9.81□□□□□ -0.84
PTCD3-212ENST00000477520 MFRPQ9BY79 579 aa9.81□□□□□ -0.84
PTCD3-212ENST00000477520 PTGER2P43116 358 aa9.8□□□□□ -0.84
PTCD3-212ENST00000477520 LSM11P83369 360 aaKnown RBP eCLIP9.8□□□□□ -0.84
PTCD3-212ENST00000477520 C2orf72A6NCS6 295 aa9.79□□□□□ -0.84
PTCD3-212ENST00000477520 STK24Q9Y6E0 443 aa9.79□□□□□ -0.84
PTCD3-212ENST00000477520 NUDT7P0C024 238 aa9.78□□□□□ -0.84
PTCD3-212ENST00000477520 POTEEQ6S8J3 1075 aa9.78□□□□□ -0.84
PTCD3-212ENST00000477520 LHX6Q9UPM6 363 aa9.74□□□□□ -0.85
PTCD3-212ENST00000477520 AXIN2Q9Y2T1 843 aa9.74□□□□□ -0.85
PTCD3-212ENST00000477520 STK25O00506 426 aa9.72□□□□□ -0.85
PTCD3-212ENST00000477520 PCDHGA4Q9Y5G9 962 aa9.71□□□□□ -0.86
PTCD3-212ENST00000477520 SLC34A2O95436 690 aa9.69□□□□□ -0.86
PTCD3-212ENST00000477520 PBX2P40425 430 aa9.69□□□□□ -0.86
PTCD3-212ENST00000477520 TAOK2Q9UL54 1235 aa9.69□□□□□ -0.86
PTCD3-212ENST00000477520 PPP1R37O75864 691 aa9.65□□□□□ -0.86
PTCD3-212ENST00000477520 ECM2O94769 699 aaPredicted RBP9.64□□□□□ -0.87
PTCD3-212ENST00000477520 TMC2Q8TDI7 906 aa9.64□□□□□ -0.87
PTCD3-212ENST00000477520 RGL2O15211 777 aa9.63□□□□□ -0.87
PTCD3-212ENST00000477520 KDM4FA0A1W2PPD8 638 aa9.62□□□□□ -0.87
PTCD3-212ENST00000477520 ADGRD1Q6QNK2 874 aa9.61□□□□□ -0.87
PTCD3-212ENST00000477520 PLA2G2EQ9NZK7 142 aa9.61□□□□□ -0.87
PTCD3-212ENST00000477520 PKD2Q13563 968 aa9.6□□□□□ -0.87
PTCD3-212ENST00000477520 ARHGAP33O14559 1287 aa9.59□□□□□ -0.87
PTCD3-212ENST00000477520 HCSTQ9UBK5 93 aa9.59□□□□□ -0.87
PTCD3-212ENST00000477520 DMRTA1Q5VZB9 504 aa9.58□□□□□ -0.88
PTCD3-212ENST00000477520 PSEN2P49810 448 aa9.56□□□□□ -0.88
PTCD3-212ENST00000477520 HRO43593 1189 aa9.55□□□□□ -0.88
PTCD3-212ENST00000477520 PTCD2Q8WV60 388 aaKnown RBP9.55□□□□□ -0.88
PTCD3-212ENST00000477520 PSDA5PKW4 1024 aaPredicted RBP9.54□□□□□ -0.88
PTCD3-212ENST00000477520 TK2O00142 265 aa9.52□□□□□ -0.89
PTCD3-212ENST00000477520 PLPP6Q8IY26 295 aa9.52□□□□□ -0.89
PTCD3-212ENST00000477520 FOXK1P85037 733 aa9.51□□□□□ -0.89
PTCD3-212ENST00000477520 DSG2Q14126 1118 aa9.48□□□□□ -0.89
PTCD3-212ENST00000477520 KCTD12Q96CX2 325 aaKnown RBP9.48□□□□□ -0.89
PTCD3-212ENST00000477520 PPP4R3BQ5MIZ7 849 aa9.47□□□□□ -0.89
PTCD3-212ENST00000477520 GPHNQ9NQX3 736 aaPredicted RBP9.47□□□□□ -0.89
PTCD3-212ENST00000477520 KCNK17Q96T54 332 aa9.45□□□□□ -0.9
PTCD3-212ENST00000477520 VPS9D1Q9Y2B5 631 aa9.41□□□□□ -0.9
PTCD3-212ENST00000477520 TBC1D12O60347 775 aa9.4□□□□□ -0.9
PTCD3-212ENST00000477520 HS6ST3Q8IZP7 471 aa9.39□□□□□ -0.91
PTCD3-212ENST00000477520 PTPN5P54829 565 aa9.38□□□□□ -0.91
PTCD3-212ENST00000477520 OXER1Q8TDS5 423 aa9.38□□□□□ -0.91
PTCD3-212ENST00000477520 UPF1Q92900 1129 aaKnown RBP eCLIP9.38□□□□□ -0.91
PTCD3-212ENST00000477520 STAC3Q96MF2 364 aa9.38□□□□□ -0.91
PTCD3-212ENST00000477520 ZNF454Q8N9F8 522 aa9.36□□□□□ -0.91
PTCD3-212ENST00000477520 KCNH8Q96L42 1107 aa9.34□□□□□ -0.91
PTCD3-212ENST00000477520 BCL2L12Q9HB09 334 aa9.34□□□□□ -0.91
PTCD3-212ENST00000477520 BHMG1C9JSJ3 638 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-212ENST00000477520 NKX1-1Q15270 411 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-212ENST00000477520 SLC4A5Q9BY07 1137 aa9.32□□□□□ -0.92
PTCD3-212ENST00000477520 CRISPLD2Q9H0B8 497 aa9.32□□□□□ -0.92
PTCD3-212ENST00000477520 FOSBP53539 338 aa9.31□□□□□ -0.92
PTCD3-212ENST00000477520 THSD4Q6ZMP0 1018 aa9.31□□□□□ -0.92
PTCD3-212ENST00000477520 CHGAP10645 457 aaKnown RBP9.3□□□□□ -0.92
PTCD3-212ENST00000477520 ZBED2Q9BTP6 218 aa9.3□□□□□ -0.92
PTCD3-212ENST00000477520 PPP1R15BQ5SWA1 713 aa9.28□□□□□ -0.92
PTCD3-212ENST00000477520 PTPREP23469 700 aa9.27□□□□□ -0.93
PTCD3-212ENST00000477520 IFFO2Q5TF58 517 aa9.27□□□□□ -0.93
PTCD3-212ENST00000477520 NCKAP5LQ9HCH0 1330 aa9.27□□□□□ -0.93
PTCD3-212ENST00000477520 WNT2BQ93097 391 aa9.26□□□□□ -0.93
PTCD3-212ENST00000477520 ANO8Q9HCE9 1232 aaPredicted RBP9.26□□□□□ -0.93
PTCD3-212ENST00000477520 A0A0G2JS52 829 aa9.25□□□□□ -0.93
PTCD3-212ENST00000477520 ADAM33Q9BZ11 813 aa9.25□□□□□ -0.93
PTCD3-212ENST00000477520 DNAJC5Q9H3Z4 198 aa9.25□□□□□ -0.93
PTCD3-212ENST00000477520 RGS20O76081 388 aa9.24□□□□□ -0.93
PTCD3-212ENST00000477520 MRPL50Q8N5N7 158 aaKnown RBP9.24□□□□□ -0.93
PTCD3-212ENST00000477520 JPH4Q96JJ6 628 aa9.24□□□□□ -0.93
PTCD3-212ENST00000477520 NISCHQ9Y2I1 1504 aa9.23□□□□□ -0.93
PTCD3-212ENST00000477520 GOLGA8CPA6NN73 597 aa9.23□□□□□ -0.93
PTCD3-212ENST00000477520 EVI5O60447 810 aa9.22□□□□□ -0.93
PTCD3-212ENST00000477520 ZDHHC16Q969W1 377 aa9.22□□□□□ -0.93
PTCD3-212ENST00000477520 IRX2Q9BZI1 471 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-212ENST00000477520 PDE4AP27815 886 aa9.19□□□□□ -0.94
PTCD3-212ENST00000477520 PROX2Q3B8N5 592 aa9.17□□□□□ -0.94
PTCD3-212ENST00000477520 NBPF3Q9H094 633 aa9.17□□□□□ -0.94
PTCD3-212ENST00000477520 LARP6Q9BRS8 491 aaKnown RBP9.16□□□□□ -0.94
PTCD3-212ENST00000477520 RYDENQ9NUL5 291 aaKnown RBP9.16□□□□□ -0.94
PTCD3-212ENST00000477520 COL9A1P20849 921 aa9.15□□□□□ -0.94
PTCD3-212ENST00000477520 PCDHGA10Q9Y5H3 936 aa9.15□□□□□ -0.94
PTCD3-212ENST00000477520 PPP1R3GB7ZBB8 358 aa9.14□□□□□ -0.95
PTCD3-212ENST00000477520 EMILIN3Q9NT22 766 aa9.14□□□□□ -0.95
PTCD3-212ENST00000477520 GTPBP6O43824 516 aaPredicted RBP9.13□□□□□ -0.95
PTCD3-212ENST00000477520 BCAMP50895 628 aa9.13□□□□□ -0.95
PTCD3-212ENST00000477520 MAP3K9P80192 1104 aa9.13□□□□□ -0.95
PTCD3-212ENST00000477520 DDX27Q96GQ7 796 aaKnown RBP9.13□□□□□ -0.95
PTCD3-212ENST00000477520 RABGEF1Q9UJ41 708 aa9.13□□□□□ -0.95
PTCD3-212ENST00000477520 MFSD10Q14728 455 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms