RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 CARMIL2Q6F5E8 1435 aa6.81□□□□□ -1.32
CCDC39-204ENST00000476379 DHX57Q6P158 1386 aaKnown RBP6.81□□□□□ -1.32
CCDC39-204ENST00000476379 CCNB3Q8WWL7 1395 aa6.81□□□□□ -1.32
CCDC39-204ENST00000476379 EIF5BO60841 1220 aaKnown RBP6.8□□□□□ -1.32
CCDC39-204ENST00000476379 TMC1Q8TDI8 760 aa6.8□□□□□ -1.32
CCDC39-204ENST00000476379 SLC24A1O60721 1099 aa6.79□□□□□ -1.32
CCDC39-204ENST00000476379 CCDC184Q52MB2 194 aa6.78□□□□□ -1.32
CCDC39-204ENST00000476379 HSPA5P11021 654 aaKnown RBP6.78□□□□□ -1.32
CCDC39-204ENST00000476379 ABCA5Q8WWZ7 1642 aa6.78□□□□□ -1.32
CCDC39-204ENST00000476379 CHD1O14646 1710 aa6.78□□□□□ -1.32
CCDC39-204ENST00000476379 ADAMTS12P58397 1594 aa6.78□□□□□ -1.32
CCDC39-204ENST00000476379 KIAA0586Q9BVV6 1533 aa6.77□□□□□ -1.33
CCDC39-204ENST00000476379 MAGI1Q96QZ7 1491 aaPredicted RBP6.77□□□□□ -1.33
CCDC39-204ENST00000476379 IQGAP2Q13576 1575 aa6.77□□□□□ -1.33
CCDC39-204ENST00000476379 TSPY4P0CV99 314 aa6.77□□□□□ -1.33
CCDC39-204ENST00000476379 TSPY10P0CW01 314 aa6.77□□□□□ -1.33
CCDC39-204ENST00000476379 EIF4G2P78344 907 aaKnown RBP eCLIP6.77□□□□□ -1.33
CCDC39-204ENST00000476379 ARHGEF11O15085 1522 aa6.77□□□□□ -1.33
CCDC39-204ENST00000476379 PBRM1Q86U86 1689 aa6.76□□□□□ -1.33
CCDC39-204ENST00000476379 CEBPAP49715 358 aaPredicted RBP6.76□□□□□ -1.33
CCDC39-204ENST00000476379 NEUROD2Q15784 382 aa6.76□□□□□ -1.33
CCDC39-204ENST00000476379 CC2D1BQ5T0F9 858 aaKnown RBP6.76□□□□□ -1.33
CCDC39-204ENST00000476379 DISP1Q96F81 1524 aa6.76□□□□□ -1.33
CCDC39-204ENST00000476379 ERICH3Q5RHP9 1530 aa6.76□□□□□ -1.33
CCDC39-204ENST00000476379 ANP32AP39687 249 aaKnown RBP6.76□□□□□ -1.33
CCDC39-204ENST00000476379 TNNT2P45379 298 aaPredicted RBP6.76□□□□□ -1.33
CCDC39-204ENST00000476379 PCF11O94913 1555 aaKnown RBP6.75□□□□□ -1.33
CCDC39-204ENST00000476379 KIF3BO15066 747 aa6.75□□□□□ -1.33
CCDC39-204ENST00000476379 SKAP1Q86WV1 359 aa6.75□□□□□ -1.33
CCDC39-204ENST00000476379 DNAJC5Q9H3Z4 198 aa6.75□□□□□ -1.33
CCDC39-204ENST00000476379 RBM33Q96EV2 1170 aaKnown RBP6.74□□□□□ -1.33
CCDC39-204ENST00000476379 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.74□□□□□ -1.33
CCDC39-204ENST00000476379 SLC4A3P48751 1232 aa6.74□□□□□ -1.33
CCDC39-204ENST00000476379 FMN1Q68DA7 1419 aa6.73□□□□□ -1.33
CCDC39-204ENST00000476379 RGS3P49796 1198 aa6.73□□□□□ -1.33
CCDC39-204ENST00000476379 PPP1R15AO75807 674 aaPredicted RBP6.73□□□□□ -1.33
CCDC39-204ENST00000476379 SAFB2Q14151 953 aaKnown RBP eCLIP6.73□□□□□ -1.33
CCDC39-204ENST00000476379 PLIN1O60240 522 aa6.72□□□□□ -1.33
CCDC39-204ENST00000476379 CANXP27824 592 aaKnown RBP6.72□□□□□ -1.33
CCDC39-204ENST00000476379 L3MBTL2Q969R5 705 aa6.72□□□□□ -1.33
CCDC39-204ENST00000476379 ZBTB47Q9UFB7 747 aaPredicted RBP6.72□□□□□ -1.33
CCDC39-204ENST00000476379 ATP10BO94823 1461 aa6.72□□□□□ -1.33
CCDC39-204ENST00000476379 UACAQ9BZF9 1416 aa6.72□□□□□ -1.33
CCDC39-204ENST00000476379 NUP153P49790 1475 aaKnown RBP6.72□□□□□ -1.33
CCDC39-204ENST00000476379 NUP160Q12769 1436 aa6.71□□□□□ -1.33
CCDC39-204ENST00000476379 EPRSP07814 1512 aaKnown RBP6.71□□□□□ -1.34
CCDC39-204ENST00000476379 SCAPERQ9BY12 1400 aa6.7□□□□□ -1.34
CCDC39-204ENST00000476379 DEKP35659 375 aaKnown RBP6.7□□□□□ -1.34
CCDC39-204ENST00000476379 SPRYD3Q8NCJ5 442 aa6.7□□□□□ -1.34
CCDC39-204ENST00000476379 EFCAB2Q5VUJ9 269 aa6.7□□□□□ -1.34
CCDC39-204ENST00000476379 MAGI3Q5TCQ9 1506 aa6.7□□□□□ -1.34
CCDC39-204ENST00000476379 NUTM2FA1L443 756 aa6.7□□□□□ -1.34
CCDC39-204ENST00000476379 NCOA2Q15596 1464 aa6.7□□□□□ -1.34
CCDC39-204ENST00000476379 C11orf95C9JLR9 678 aaPredicted RBP6.7□□□□□ -1.34
CCDC39-204ENST00000476379 CARD11Q9BXL7 1154 aa6.7□□□□□ -1.34
CCDC39-204ENST00000476379 SETD5Q9C0A6 1442 aa6.69□□□□□ -1.34
CCDC39-204ENST00000476379 DCAF11Q8TEB1 546 aa6.69□□□□□ -1.34
CCDC39-204ENST00000476379 ASXL2Q76L83 1435 aa6.69□□□□□ -1.34
CCDC39-204ENST00000476379 LRRC9Q6ZRR7 1453 aa6.69□□□□□ -1.34
CCDC39-204ENST00000476379 ESF1Q9H501 851 aaKnown RBP6.69□□□□□ -1.34
CCDC39-204ENST00000476379 SPAG9O60271 1321 aaKnown RBP6.68□□□□□ -1.34
CCDC39-204ENST00000476379 STAG3Q9UJ98 1225 aa6.68□□□□□ -1.34
CCDC39-204ENST00000476379 PKD2Q13563 968 aa6.68□□□□□ -1.34
CCDC39-204ENST00000476379 PTPRKQ15262 1439 aa6.68□□□□□ -1.34
CCDC39-204ENST00000476379 TPRNQ4KMQ1 711 aa6.68□□□□□ -1.34
CCDC39-204ENST00000476379 FBXO31Q5XUX0 539 aaPredicted RBP6.68□□□□□ -1.34
CCDC39-204ENST00000476379 WDR97A6NE52 1622 aa6.68□□□□□ -1.34
CCDC39-204ENST00000476379 MSH5O43196 834 aa6.67□□□□□ -1.34
CCDC39-204ENST00000476379 CUL7Q14999 1698 aa6.67□□□□□ -1.34
CCDC39-204ENST00000476379 CASKIN1Q8WXD9 1431 aa6.67□□□□□ -1.34
CCDC39-204ENST00000476379 TSPOAP1O95153 1857 aa6.67□□□□□ -1.34
CCDC39-204ENST00000476379 KIAA0556O60303 1618 aa6.66□□□□□ -1.34
CCDC39-204ENST00000476379 PAK3O75914 559 aaPredicted RBP6.66□□□□□ -1.34
CCDC39-204ENST00000476379 NEFMP07197 916 aa6.66□□□□□ -1.34
CCDC39-204ENST00000476379 MPHOSPH9Q99550 1183 aa6.66□□□□□ -1.34
CCDC39-204ENST00000476379 PPP4R2Q9NY27 417 aa6.66□□□□□ -1.34
CCDC39-204ENST00000476379 ARHGAP5Q13017 1502 aa6.65□□□□□ -1.34
CCDC39-204ENST00000476379 STK26Q9P289 416 aa6.65□□□□□ -1.34
CCDC39-204ENST00000476379 NOP58Q9Y2X3 529 aaKnown RBP6.65□□□□□ -1.34
CCDC39-204ENST00000476379 NUP155O75694 1391 aa6.65□□□□□ -1.34
CCDC39-204ENST00000476379 CD109Q6YHK3 1445 aa6.65□□□□□ -1.35
CCDC39-204ENST00000476379 HSPA2P54652 639 aa6.64□□□□□ -1.35
CCDC39-204ENST00000476379 FRAT1Q92837 279 aaPredicted RBP6.64□□□□□ -1.35
CCDC39-204ENST00000476379 KIF14Q15058 1648 aa6.64□□□□□ -1.35
CCDC39-204ENST00000476379 CCDC146Q8IYE0 955 aa6.64□□□□□ -1.35
CCDC39-204ENST00000476379 FGD6Q6ZV73 1430 aa6.64□□□□□ -1.35
CCDC39-204ENST00000476379 TRAPPC8Q9Y2L5 1435 aa6.63□□□□□ -1.35
CCDC39-204ENST00000476379 WASHC2AQ641Q2 1341 aa6.63□□□□□ -1.35
CCDC39-204ENST00000476379 WASHC2CQ9Y4E1 1318 aa6.63□□□□□ -1.35
CCDC39-204ENST00000476379 GOLGB1Q14789 3259 aaKnown RBP6.63□□□□□ -1.35
CCDC39-204ENST00000476379 TROQ12816 1431 aaPredicted RBP6.63□□□□□ -1.35
CCDC39-204ENST00000476379 PPM1GO15355 546 aaPredicted RBP6.62□□□□□ -1.35
CCDC39-204ENST00000476379 EXOC6Q8TAG9 804 aa6.62□□□□□ -1.35
CCDC39-204ENST00000476379 CCDC18Q5T9S5 1454 aa6.62□□□□□ -1.35
CCDC39-204ENST00000476379 ZBTB7CA1YPR0 619 aa6.62□□□□□ -1.35
CCDC39-204ENST00000476379 TIAM1Q13009 1591 aa6.62□□□□□ -1.35
CCDC39-204ENST00000476379 CTTNBP2Q8WZ74 1663 aa6.62□□□□□ -1.35
CCDC39-204ENST00000476379 RIMBP3CA6NJZ7 1639 aa6.61□□□□□ -1.35
CCDC39-204ENST00000476379 RIMBP3BA6NNM3 1639 aa6.61□□□□□ -1.35
CCDC39-204ENST00000476379 RIMBP3Q9UFD9 1639 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms