RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 MICALL2Q8IY33 904 aa8.25□□□□□ -1.09
VPS13D-206ENST00000476045 HMGXB3Q12766 1538 aa8.19□□□□□ -1.1
VPS13D-206ENST00000476045 SMARCA2P51531 1590 aa8.18□□□□□ -1.1
VPS13D-206ENST00000476045 G3V3G9 751 aa8.18□□□□□ -1.1
VPS13D-206ENST00000476045 TMEM92Q6UXU6 159 aa8.18□□□□□ -1.1
VPS13D-206ENST00000476045 SMARCA4P51532 1647 aa8.18□□□□□ -1.1
VPS13D-206ENST00000476045 SNPHO15079 494 aa8.17□□□□□ -1.1
VPS13D-206ENST00000476045 NKX1-1Q15270 411 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-206ENST00000476045 AMER1Q5JTC6 1135 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-206ENST00000476045 CHGAP10645 457 aaKnown RBP8.16□□□□□ -1.1
VPS13D-206ENST00000476045 BAZ1AQ9NRL2 1556 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-206ENST00000476045 POTEMA6NI47 508 aa8.15□□□□□ -1.1
VPS13D-206ENST00000476045 ST18O60284 1047 aa8.15□□□□□ -1.1
VPS13D-206ENST00000476045 PEG3Q9GZU2 1588 aa8.14□□□□□ -1.11
VPS13D-206ENST00000476045 KIF3CO14782 793 aa8.14□□□□□ -1.11
VPS13D-206ENST00000476045 HOXB3P14651 431 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-206ENST00000476045 POTEGQ6S5H5 508 aa8.14□□□□□ -1.11
VPS13D-206ENST00000476045 NCAPD3P42695 1498 aa8.13□□□□□ -1.11
VPS13D-206ENST00000476045 PPP1R37O75864 691 aa8.12□□□□□ -1.11
VPS13D-206ENST00000476045 FAM163AQ96GL9 167 aaPredicted RBP8.12□□□□□ -1.11
VPS13D-206ENST00000476045 ATAD2BQ9ULI0 1458 aa8.11□□□□□ -1.11
VPS13D-206ENST00000476045 RYDENQ9NUL5 291 aaKnown RBP8.1□□□□□ -1.11
VPS13D-206ENST00000476045 RTN4Q9NQC3 1192 aaKnown RBP8.09□□□□□ -1.11
VPS13D-206ENST00000476045 PCDH10Q9P2E7 1040 aa8.09□□□□□ -1.11
VPS13D-206ENST00000476045 CUX2O14529 1486 aa8.06□□□□□ -1.12
VPS13D-206ENST00000476045 BAZ1BQ9UIG0 1483 aaKnown RBP8.06□□□□□ -1.12
VPS13D-206ENST00000476045 GTPBP6O43824 516 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-206ENST00000476045 DOK7Q18PE1 504 aa8.06□□□□□ -1.12
VPS13D-206ENST00000476045 ZSWIM6Q9HCJ5 1215 aa8.06□□□□□ -1.12
VPS13D-206ENST00000476045 C2orf72A6NCS6 295 aa8.04□□□□□ -1.12
VPS13D-206ENST00000476045 HOXB1P14653 301 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-206ENST00000476045 LAMC3Q9Y6N6 1575 aa8.03□□□□□ -1.12
VPS13D-206ENST00000476045 ERCC6Q03468 1493 aa8.02□□□□□ -1.13
VPS13D-206ENST00000476045 SLC34A2O95436 690 aa8.02□□□□□ -1.13
VPS13D-206ENST00000476045 GPR153Q6NV75 609 aa8□□□□□ -1.13
VPS13D-206ENST00000476045 CRISPLD2Q9H0B8 497 aa8□□□□□ -1.13
VPS13D-206ENST00000476045 RIMBP2O15034 1052 aa7.99□□□□□ -1.13
VPS13D-206ENST00000476045 FOXK1P85037 733 aa7.99□□□□□ -1.13
VPS13D-206ENST00000476045 GPHNQ9NQX3 736 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-206ENST00000476045 MROH2BQ7Z745 1585 aa7.98□□□□□ -1.13
VPS13D-206ENST00000476045 THOC2Q8NI27 1593 aaKnown RBP7.98□□□□□ -1.13
VPS13D-206ENST00000476045 TMC2Q8TDI7 906 aa7.98□□□□□ -1.13
VPS13D-206ENST00000476045 BBXQ8WY36 941 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-206ENST00000476045 EMP3P54852 163 aa7.97□□□□□ -1.13
VPS13D-206ENST00000476045 MARVELD3Q96A59 401 aa7.97□□□□□ -1.13
VPS13D-206ENST00000476045 POTEB3A0JP26 581 aa7.96□□□□□ -1.14
VPS13D-206ENST00000476045 POTEBQ6S5H4 581 aa7.96□□□□□ -1.14
VPS13D-206ENST00000476045 ZNF710Q8N1W2 664 aa7.96□□□□□ -1.14
VPS13D-206ENST00000476045 CDAN1Q8IWY9 1227 aa7.95□□□□□ -1.14
VPS13D-206ENST00000476045 KIF21AQ7Z4S6 1674 aa7.95□□□□□ -1.14
VPS13D-206ENST00000476045 KDM4FA0A1W2PPD8 638 aa7.94□□□□□ -1.14
VPS13D-206ENST00000476045 HS3ST6Q96QI5 342 aa7.94□□□□□ -1.14
VPS13D-206ENST00000476045 NCKAP5LQ9HCH0 1330 aa7.94□□□□□ -1.14
VPS13D-206ENST00000476045 PRDM2Q13029 1718 aa7.93□□□□□ -1.14
VPS13D-206ENST00000476045 DSG2Q14126 1118 aa7.92□□□□□ -1.14
VPS13D-206ENST00000476045 MFSD10Q14728 455 aa7.92□□□□□ -1.14
VPS13D-206ENST00000476045 PTCD2Q8WV60 388 aaKnown RBP7.92□□□□□ -1.14
VPS13D-206ENST00000476045 PDS5BQ9NTI5 1447 aa7.92□□□□□ -1.14
VPS13D-206ENST00000476045 WIZO95785 1651 aa7.92□□□□□ -1.14
VPS13D-206ENST00000476045 NESP48681 1621 aa7.91□□□□□ -1.14
VPS13D-206ENST00000476045 PLPP6Q8IY26 295 aa7.9□□□□□ -1.14
VPS13D-206ENST00000476045 KRTAP3-3Q9BYR6 98 aa7.9□□□□□ -1.14
VPS13D-206ENST00000476045 KRTAP3-2Q9BYR7 98 aa7.9□□□□□ -1.14
VPS13D-206ENST00000476045 PCDHGA4Q9Y5G9 962 aa7.9□□□□□ -1.14
VPS13D-206ENST00000476045 TOP2AP11388 1531 aaKnown RBP7.89□□□□□ -1.15
VPS13D-206ENST00000476045 FAM205CA6NFA0 338 aa7.89□□□□□ -1.15
VPS13D-206ENST00000476045 ARSIQ5FYB1 569 aa7.89□□□□□ -1.15
VPS13D-206ENST00000476045 WDR62O43379 1518 aa7.88□□□□□ -1.15
VPS13D-206ENST00000476045 PDE4AP27815 886 aa7.87□□□□□ -1.15
VPS13D-206ENST00000476045 PPP1R15BQ5SWA1 713 aa7.87□□□□□ -1.15
VPS13D-206ENST00000476045 CADPS2Q86UW7 1296 aa7.87□□□□□ -1.15
VPS13D-206ENST00000476045 OXER1Q8TDS5 423 aa7.87□□□□□ -1.15
VPS13D-206ENST00000476045 ZNF316A6NFI3 1004 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-206ENST00000476045 KHSRPQ92945 711 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS13D-206ENST00000476045 MRC2Q9UBG0 1479 aa7.86□□□□□ -1.15
VPS13D-206ENST00000476045 CADPSQ9ULU8 1353 aa7.85□□□□□ -1.15
VPS13D-206ENST00000476045 ERBB3P21860 1342 aa7.85□□□□□ -1.15
VPS13D-206ENST00000476045 VARS2Q5ST30 1063 aaKnown RBP7.85□□□□□ -1.15
VPS13D-206ENST00000476045 ZNF687Q8N1G0 1237 aa7.85□□□□□ -1.15
VPS13D-206ENST00000476045 CEP164Q9UPV0 1460 aa7.84□□□□□ -1.15
VPS13D-206ENST00000476045 NUDT7P0C024 238 aa7.83□□□□□ -1.16
VPS13D-206ENST00000476045 SPRYD3Q8NCJ5 442 aa7.83□□□□□ -1.16
VPS13D-206ENST00000476045 DDX27Q96GQ7 796 aaKnown RBP7.83□□□□□ -1.16
VPS13D-206ENST00000476045 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-206ENST00000476045 RSF1Q96T23 1441 aaPredicted RBP7.82□□□□□ -1.16
VPS13D-206ENST00000476045 CFTRP13569 1480 aa7.81□□□□□ -1.16
VPS13D-206ENST00000476045 CAMK2BQ13554 666 aa7.81□□□□□ -1.16
VPS13D-206ENST00000476045 PSDA5PKW4 1024 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-206ENST00000476045 LARP6Q9BRS8 491 aaKnown RBP7.8□□□□□ -1.16
VPS13D-206ENST00000476045 LHX6Q9UPM6 363 aa7.8□□□□□ -1.16
VPS13D-206ENST00000476045 FANCD2Q9BXW9 1451 aa7.8□□□□□ -1.16
VPS13D-206ENST00000476045 SPNS2Q8IVW8 549 aa7.79□□□□□ -1.16
VPS13D-206ENST00000476045 TBC1D12O60347 775 aa7.78□□□□□ -1.16
VPS13D-206ENST00000476045 PBX2P40425 430 aa7.78□□□□□ -1.16
VPS13D-206ENST00000476045 ANO8Q9HCE9 1232 aaPredicted RBP7.77□□□□□ -1.17
VPS13D-206ENST00000476045 PLSCR2Q9NRY7 297 aa7.77□□□□□ -1.17
VPS13D-206ENST00000476045 EMILIN3Q9NT22 766 aa7.77□□□□□ -1.17
VPS13D-206ENST00000476045 POTEEQ6S8J3 1075 aa7.76□□□□□ -1.17
VPS13D-206ENST00000476045 PAXIP1Q6ZW49 1069 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-206ENST00000476045 MMRN1Q13201 1228 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms