RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 PREX2Q70Z35 1606 aa31.18■■■□□ 2.58
SMIM11A-204ENST00000474455 ZNF777Q9ULD5 760 aaPredicted RBP31.18■■■□□ 2.58
SMIM11A-204ENST00000474455 ABCA9Q8IUA7 1624 aa31.16■■■□□ 2.58
SMIM11A-204ENST00000474455 TCOF1Q13428 1488 aaKnown RBP31.14■■■□□ 2.57
SMIM11A-204ENST00000474455 PELP1Q8IZL8 1130 aaKnown RBP31.12■■■□□ 2.57
SMIM11A-204ENST00000474455 ARHGAP5Q13017 1502 aa31.09■■■□□ 2.57
SMIM11A-204ENST00000474455 PLCH2O75038 1416 aa31.09■■■□□ 2.57
SMIM11A-204ENST00000474455 CAMSAP2Q08AD1 1489 aa31.09■■■□□ 2.57
SMIM11A-204ENST00000474455 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.08■■■□□ 2.57
SMIM11A-204ENST00000474455 SAMD9LQ8IVG5 1584 aa31.05■■■□□ 2.56
SMIM11A-204ENST00000474455 PTPRKQ15262 1439 aa31.04■■■□□ 2.56
SMIM11A-204ENST00000474455 DIP2BQ9P265 1576 aa31.04■■■□□ 2.56
SMIM11A-204ENST00000474455 FAM69CQ0P6D2 419 aa31.01■■■□□ 2.56
SMIM11A-204ENST00000474455 CD109Q6YHK3 1445 aa31.01■■■□□ 2.55
SMIM11A-204ENST00000474455 KIF13AQ9H1H9 1805 aa31■■■□□ 2.55
SMIM11A-204ENST00000474455 HNRNPMP52272 730 aaKnown RBP eCLIP30.99■■■□□ 2.55
SMIM11A-204ENST00000474455 TSPOAP1O95153 1857 aa30.97■■■□□ 2.55
SMIM11A-204ENST00000474455 GLI2P10070 1586 aa30.96■■■□□ 2.55
SMIM11A-204ENST00000474455 MAP3K4Q9Y6R4 1608 aa30.96■■■□□ 2.55
SMIM11A-204ENST00000474455 EFCAB2Q5VUJ9 269 aa30.96■■■□□ 2.55
SMIM11A-204ENST00000474455 CHIC2Q9UKJ5 165 aa30.95■■■□□ 2.54
SMIM11A-204ENST00000474455 DNMT1P26358 1616 aaKnown RBP30.95■■■□□ 2.54
SMIM11A-204ENST00000474455 FANCAO15360 1455 aa30.94■■■□□ 2.54
SMIM11A-204ENST00000474455 ARAP3Q8WWN8 1544 aa30.93■■■□□ 2.54
SMIM11A-204ENST00000474455 ABCC5O15440 1437 aa30.93■■■□□ 2.54
SMIM11A-204ENST00000474455 DAPK1P53355 1430 aa30.93■■■□□ 2.54
SMIM11A-204ENST00000474455 SYCP2Q9BX26 1530 aa30.92■■■□□ 2.54
SMIM11A-204ENST00000474455 ARHGEF12Q9NZN5 1544 aa30.92■■■□□ 2.54
SMIM11A-204ENST00000474455 MBD5Q9P267 1494 aa30.9■■■□□ 2.54
SMIM11A-204ENST00000474455 CROCC2H7BZ55 1655 aa30.87■■■□□ 2.53
SMIM11A-204ENST00000474455 ABCC1P33527 1531 aa30.85■■■□□ 2.53
SMIM11A-204ENST00000474455 PPRC1Q5VV67 1664 aaKnown RBP30.84■■■□□ 2.53
SMIM11A-204ENST00000474455 AKNAQ7Z591 1439 aa30.82■■■□□ 2.52
SMIM11A-204ENST00000474455 ARHGEF5Q12774 1597 aa30.82■■■□□ 2.52
SMIM11A-204ENST00000474455 SCAF1Q9H7N4 1312 aaKnown RBP30.82■■■□□ 2.52
SMIM11A-204ENST00000474455 CCER1Q8TC90 406 aaPredicted RBP30.82■■■□□ 2.52
SMIM11A-204ENST00000474455 RRP7BPQ9NSQ0 103 aa30.81■■■□□ 2.52
SMIM11A-204ENST00000474455 KIAA1107Q9UPP5 1409 aa30.81■■■□□ 2.52
SMIM11A-204ENST00000474455 TRAPPC8Q9Y2L5 1435 aa30.8■■■□□ 2.52
SMIM11A-204ENST00000474455 ADGRL1O94910 1474 aa30.79■■■□□ 2.52
SMIM11A-204ENST00000474455 PLEKHH2Q8IVE3 1493 aa30.79■■■□□ 2.52
SMIM11A-204ENST00000474455 CCDC141Q6ZP82 1450 aa30.77■■■□□ 2.52
SMIM11A-204ENST00000474455 SCAPERQ9BY12 1400 aa30.77■■■□□ 2.52
SMIM11A-204ENST00000474455 AFAP1Q8N556 730 aa30.76■■■□□ 2.52
SMIM11A-204ENST00000474455 CFAP74Q9C0B2 1584 aa30.76■■■□□ 2.51
SMIM11A-204ENST00000474455 TSPY4P0CV99 314 aa30.73■■■□□ 2.51
SMIM11A-204ENST00000474455 TSPY10P0CW01 314 aa30.73■■■□□ 2.51
SMIM11A-204ENST00000474455 ADGBQ8N7X0 1667 aa30.73■■■□□ 2.51
SMIM11A-204ENST00000474455 C9orf84Q5VXU9 1444 aa30.73■■■□□ 2.51
SMIM11A-204ENST00000474455 TRHP20396 242 aaPredicted RBP30.71■■■□□ 2.51
SMIM11A-204ENST00000474455 RSPH4AQ5TD94 716 aa30.71■■■□□ 2.51
SMIM11A-204ENST00000474455 NAIPQ13075 1403 aa30.71■■■□□ 2.51
SMIM11A-204ENST00000474455 SETD5Q9C0A6 1442 aa30.71■■■□□ 2.51
SMIM11A-204ENST00000474455 NEO1Q92859 1461 aa30.71■■■□□ 2.51
SMIM11A-204ENST00000474455 RAB3GAP2Q9H2M9 1393 aa30.7■■■□□ 2.5
SMIM11A-204ENST00000474455 HFM1A2PYH4 1435 aa30.69■■■□□ 2.5
SMIM11A-204ENST00000474455 SHANK2Q9UPX8 1470 aa30.68■■■□□ 2.5
SMIM11A-204ENST00000474455 NCOA1Q15788 1441 aa30.68■■■□□ 2.5
SMIM11A-204ENST00000474455 KDM6BO15054 1643 aa30.67■■■□□ 2.5
SMIM11A-204ENST00000474455 GCC2Q8IWJ2 1684 aa30.66■■■□□ 2.5
SMIM11A-204ENST00000474455 ROCK1Q13464 1354 aa30.66■■■□□ 2.5
SMIM11A-204ENST00000474455 ADGRL2O95490 1459 aa30.65■■■□□ 2.5
SMIM11A-204ENST00000474455 RAPGEF3O95398 923 aa30.63■■■□□ 2.49
SMIM11A-204ENST00000474455 MAST1Q9Y2H9 1570 aa30.63■■■□□ 2.49
SMIM11A-204ENST00000474455 ANKRD30AQ9BXX3 1397 aa30.61■■■□□ 2.49
SMIM11A-204ENST00000474455 TEX14Q8IWB6 1497 aa30.6■■■□□ 2.49
SMIM11A-204ENST00000474455 SPAG9O60271 1321 aaKnown RBP30.59■■■□□ 2.49
SMIM11A-204ENST00000474455 POGZQ7Z3K3 1410 aa30.59■■■□□ 2.49
SMIM11A-204ENST00000474455 RICTORQ6R327 1708 aa30.58■■■□□ 2.49
SMIM11A-204ENST00000474455 DENND4BO75064 1496 aaPredicted RBP30.57■■■□□ 2.48
SMIM11A-204ENST00000474455 ZNF518AQ6AHZ1 1483 aa30.57■■■□□ 2.48
SMIM11A-204ENST00000474455 ZFYVE16Q7Z3T8 1539 aa30.55■■■□□ 2.48
SMIM11A-204ENST00000474455 ACIN1Q9UKV3 1341 aaKnown RBP30.55■■■□□ 2.48
SMIM11A-204ENST00000474455 KIF15Q9NS87 1388 aa30.54■■■□□ 2.48
SMIM11A-204ENST00000474455 KIDINS220Q9ULH0 1771 aa30.54■■■□□ 2.48
SMIM11A-204ENST00000474455 MYT1LQ9UL68 1186 aa30.54■■■□□ 2.48
SMIM11A-204ENST00000474455 INO80Q9ULG1 1556 aaPredicted RBP30.53■■■□□ 2.48
SMIM11A-204ENST00000474455 KDM5CP41229 1560 aa30.53■■■□□ 2.48
SMIM11A-204ENST00000474455 COL17A1Q9UMD9 1497 aaPredicted RBP30.52■■■□□ 2.48
SMIM11A-204ENST00000474455 ATP7AQ04656 1500 aa30.52■■■□□ 2.48
SMIM11A-204ENST00000474455 FRMPD1Q5SYB0 1578 aa30.52■■■□□ 2.48
SMIM11A-204ENST00000474455 PLXNC1O60486 1568 aa30.51■■■□□ 2.47
SMIM11A-204ENST00000474455 RTEL1-TNFRSF6BF6WH68 1400 aa30.49■■■□□ 2.47
SMIM11A-204ENST00000474455 DIEXFQ68CQ4 756 aaKnown RBP30.47■■■□□ 2.47
SMIM11A-204ENST00000474455 ANKRD50Q9ULJ7 1429 aa30.46■■■□□ 2.47
SMIM11A-204ENST00000474455 HECW2Q9P2P5 1572 aa30.45■■■□□ 2.46
SMIM11A-204ENST00000474455 DHX57Q6P158 1386 aaKnown RBP30.42■■■□□ 2.46
SMIM11A-204ENST00000474455 CENPBP07199 599 aaPredicted RBP30.42■■■□□ 2.46
SMIM11A-204ENST00000474455 MLH3Q9UHC1 1453 aa30.42■■■□□ 2.46
SMIM11A-204ENST00000474455 DUOX2Q9NRD8 1548 aa30.39■■■□□ 2.46
SMIM11A-204ENST00000474455 ABCA6Q8N139 1617 aa30.39■■■□□ 2.46
SMIM11A-204ENST00000474455 TRIM52Q96A61 297 aa30.39■■■□□ 2.46
SMIM11A-204ENST00000474455 YEATS2Q9ULM3 1422 aa30.37■■■□□ 2.45
SMIM11A-204ENST00000474455 ZMYM4Q5VZL5 1548 aa30.33■■■□□ 2.45
SMIM11A-204ENST00000474455 DIP2CQ9Y2E4 1556 aa30.32■■■□□ 2.44
SMIM11A-204ENST00000474455 NEUROD1Q13562 356 aa30.31■■■□□ 2.44
SMIM11A-204ENST00000474455 DHX29Q7Z478 1369 aaKnown RBP30.3■■■□□ 2.44
SMIM11A-204ENST00000474455 ERBINQ96RT1 1412 aa30.29■■■□□ 2.44
SMIM11A-204ENST00000474455 A2MP01023 1474 aa30.28■■■□□ 2.44
SMIM11A-204ENST00000474455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.25■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms