RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 RYDENQ9NUL5 291 aaKnown RBP13.81□□□□□ -0.2
VPS50-211ENST00000474412 BBXQ8WY36 941 aaPredicted RBP13.78□□□□□ -0.2
VPS50-211ENST00000474412 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.78□□□□□ -0.2
VPS50-211ENST00000474412 CECR2Q9BXF3 1484 aa13.78□□□□□ -0.2
VPS50-211ENST00000474412 MICALL2Q8IY33 904 aa13.76□□□□□ -0.21
VPS50-211ENST00000474412 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.74□□□□□ -0.21
VPS50-211ENST00000474412 PPP1R37O75864 691 aa13.72□□□□□ -0.21
VPS50-211ENST00000474412 SLAIN1Q8ND83 568 aa13.72□□□□□ -0.21
VPS50-211ENST00000474412 TMEM121BQ9BXQ6 578 aaPredicted RBP13.72□□□□□ -0.21
VPS50-211ENST00000474412 GTPBP6O43824 516 aaPredicted RBP13.7□□□□□ -0.22
VPS50-211ENST00000474412 SPRYD3Q8NCJ5 442 aa13.63□□□□□ -0.23
VPS50-211ENST00000474412 SMARCA4P51532 1647 aa13.62□□□□□ -0.23
VPS50-211ENST00000474412 PAXIP1Q6ZW49 1069 aaPredicted RBP13.61□□□□□ -0.23
VPS50-211ENST00000474412 CFAP44Q96MT7 982 aa13.61□□□□□ -0.23
VPS50-211ENST00000474412 TMEM92Q6UXU6 159 aa13.56□□□□□ -0.24
VPS50-211ENST00000474412 TMC2Q8TDI7 906 aa13.53□□□□□ -0.24
VPS50-211ENST00000474412 SNPHO15079 494 aa13.51□□□□□ -0.25
VPS50-211ENST00000474412 C2orf72A6NCS6 295 aa13.49□□□□□ -0.25
VPS50-211ENST00000474412 BAZ1AQ9NRL2 1556 aaPredicted RBP13.49□□□□□ -0.25
VPS50-211ENST00000474412 HMGXB3Q12766 1538 aa13.46□□□□□ -0.25
VPS50-211ENST00000474412 FAM163AQ96GL9 167 aaPredicted RBP13.46□□□□□ -0.25
VPS50-211ENST00000474412 ATAD2BQ9ULI0 1458 aa13.46□□□□□ -0.25
VPS50-211ENST00000474412 SMARCA2P51531 1590 aa13.45□□□□□ -0.26
VPS50-211ENST00000474412 KIF3CO14782 793 aa13.45□□□□□ -0.26
VPS50-211ENST00000474412 MROH2BQ7Z745 1585 aa13.45□□□□□ -0.26
VPS50-211ENST00000474412 PEG3Q9GZU2 1588 aa13.44□□□□□ -0.26
VPS50-211ENST00000474412 NCAPD3P42695 1498 aa13.42□□□□□ -0.26
VPS50-211ENST00000474412 DOK7Q18PE1 504 aa13.41□□□□□ -0.26
VPS50-211ENST00000474412 GPHNQ9NQX3 736 aaPredicted RBP13.41□□□□□ -0.26
VPS50-211ENST00000474412 CADPS2Q86UW7 1296 aa13.4□□□□□ -0.26
VPS50-211ENST00000474412 PDE4AP27815 886 aa13.39□□□□□ -0.27
VPS50-211ENST00000474412 CRISPLD2Q9H0B8 497 aa13.39□□□□□ -0.27
VPS50-211ENST00000474412 WIZO95785 1651 aa13.38□□□□□ -0.27
VPS50-211ENST00000474412 ZNF710Q8N1W2 664 aa13.38□□□□□ -0.27
VPS50-211ENST00000474412 NCKAP5LQ9HCH0 1330 aa13.38□□□□□ -0.27
VPS50-211ENST00000474412 HOXB3P14651 431 aaPredicted RBP13.37□□□□□ -0.27
VPS50-211ENST00000474412 PLCB2Q00722 1185 aa13.37□□□□□ -0.27
VPS50-211ENST00000474412 RIMBP2O15034 1052 aa13.36□□□□□ -0.27
VPS50-211ENST00000474412 LARP6Q9BRS8 491 aaKnown RBP13.36□□□□□ -0.27
VPS50-211ENST00000474412 BAZ1BQ9UIG0 1483 aaKnown RBP13.36□□□□□ -0.27
VPS50-211ENST00000474412 FOXK1P85037 733 aa13.35□□□□□ -0.27
VPS50-211ENST00000474412 DSG2Q14126 1118 aa13.35□□□□□ -0.27
VPS50-211ENST00000474412 ST18O60284 1047 aa13.34□□□□□ -0.27
VPS50-211ENST00000474412 PLPP6Q8IY26 295 aa13.34□□□□□ -0.27
VPS50-211ENST00000474412 PPP1R15BQ5SWA1 713 aa13.33□□□□□ -0.28
VPS50-211ENST00000474412 DDX27Q96GQ7 796 aaKnown RBP13.32□□□□□ -0.28
VPS50-211ENST00000474412 LCE2DQ5TA82 110 aaPredicted RBP13.3□□□□□ -0.28
VPS50-211ENST00000474412 NESP48681 1621 aa13.3□□□□□ -0.28
VPS50-211ENST00000474412 KIF21AQ7Z4S6 1674 aa13.29□□□□□ -0.28
VPS50-211ENST00000474412 TSHZ2Q9NRE2 1034 aa13.29□□□□□ -0.28
VPS50-211ENST00000474412 MFSD10Q14728 455 aa13.27□□□□□ -0.29
VPS50-211ENST00000474412 ZSWIM6Q9HCJ5 1215 aa13.27□□□□□ -0.29
VPS50-211ENST00000474412 SLC34A2O95436 690 aa13.24□□□□□ -0.29
VPS50-211ENST00000474412 THOC2Q8NI27 1593 aaKnown RBP13.24□□□□□ -0.29
VPS50-211ENST00000474412 MARVELD3Q96A59 401 aa13.23□□□□□ -0.29
VPS50-211ENST00000474412 HOXB1P14653 301 aaPredicted RBP13.22□□□□□ -0.29
VPS50-211ENST00000474412 HAP1P54257 671 aaPredicted RBP13.22□□□□□ -0.29
VPS50-211ENST00000474412 EMP3P54852 163 aa13.22□□□□□ -0.29
VPS50-211ENST00000474412 POTEMA6NI47 508 aa13.21□□□□□ -0.29
VPS50-211ENST00000474412 ARSIQ5FYB1 569 aa13.21□□□□□ -0.29
VPS50-211ENST00000474412 WDR70Q9NW82 654 aa13.21□□□□□ -0.29
VPS50-211ENST00000474412 LAMC3Q9Y6N6 1575 aa13.2□□□□□ -0.3
VPS50-211ENST00000474412 GPR153Q6NV75 609 aa13.2□□□□□ -0.3
VPS50-211ENST00000474412 POTEGQ6S5H5 508 aa13.2□□□□□ -0.3
VPS50-211ENST00000474412 UPF1Q92900 1129 aaKnown RBP eCLIP13.2□□□□□ -0.3
VPS50-211ENST00000474412 PCDHGA4Q9Y5G9 962 aa13.2□□□□□ -0.3
VPS50-211ENST00000474412 ERCC6Q03468 1493 aa13.2□□□□□ -0.3
VPS50-211ENST00000474412 PTCD2Q8WV60 388 aaKnown RBP13.18□□□□□ -0.3
VPS50-211ENST00000474412 TBC1D12O60347 775 aa13.17□□□□□ -0.3
VPS50-211ENST00000474412 KHSRPQ92945 711 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS50-211ENST00000474412 PRDM2Q13029 1718 aa13.16□□□□□ -0.3
VPS50-211ENST00000474412 TOP2AP11388 1531 aaKnown RBP13.14□□□□□ -0.31
VPS50-211ENST00000474412 NUDT7P0C024 238 aa13.14□□□□□ -0.31
VPS50-211ENST00000474412 OXER1Q8TDS5 423 aa13.14□□□□□ -0.31
VPS50-211ENST00000474412 RSF1Q96T23 1441 aaPredicted RBP13.13□□□□□ -0.31
VPS50-211ENST00000474412 FAM205CA6NFA0 338 aa13.12□□□□□ -0.31
VPS50-211ENST00000474412 ERBB3P21860 1342 aa13.12□□□□□ -0.31
VPS50-211ENST00000474412 CUX2O14529 1486 aa13.11□□□□□ -0.31
VPS50-211ENST00000474412 EMILIN3Q9NT22 766 aa13.1□□□□□ -0.31
VPS50-211ENST00000474412 MAP3K9P80192 1104 aa13.09□□□□□ -0.31
VPS50-211ENST00000474412 CAMK2BQ13554 666 aa13.09□□□□□ -0.31
VPS50-211ENST00000474412 E2F4Q16254 413 aa13.09□□□□□ -0.31
VPS50-211ENST00000474412 HS3ST6Q96QI5 342 aa13.07□□□□□ -0.32
VPS50-211ENST00000474412 ZNF316A6NFI3 1004 aaPredicted RBP13.06□□□□□ -0.32
VPS50-211ENST00000474412 VARS2Q5ST30 1063 aaKnown RBP13.04□□□□□ -0.32
VPS50-211ENST00000474412 DPYSL4O14531 572 aa13.03□□□□□ -0.32
VPS50-211ENST00000474412 PCDH10Q9P2E7 1040 aa13.03□□□□□ -0.32
VPS50-211ENST00000474412 LHX6Q9UPM6 363 aa13.03□□□□□ -0.32
VPS50-211ENST00000474412 EVI5O60447 810 aa13.01□□□□□ -0.33
VPS50-211ENST00000474412 PLSCR2Q9NRY7 297 aa13.01□□□□□ -0.33
VPS50-211ENST00000474412 POTEB3A0JP26 581 aa13□□□□□ -0.33
VPS50-211ENST00000474412 POTEBQ6S5H4 581 aa13□□□□□ -0.33
VPS50-211ENST00000474412 KDM4FA0A1W2PPD8 638 aa12.99□□□□□ -0.33
VPS50-211ENST00000474412 WDR62O43379 1518 aa12.98□□□□□ -0.33
VPS50-211ENST00000474412 CADPSQ9ULU8 1353 aa12.98□□□□□ -0.33
VPS50-211ENST00000474412 CDAN1Q8IWY9 1227 aa12.98□□□□□ -0.33
VPS50-211ENST00000474412 PSDA5PKW4 1024 aaPredicted RBP12.97□□□□□ -0.33
VPS50-211ENST00000474412 PDS5BQ9NTI5 1447 aa12.96□□□□□ -0.33
VPS50-211ENST00000474412 MRC2Q9UBG0 1479 aa12.96□□□□□ -0.34
VPS50-211ENST00000474412 CEP164Q9UPV0 1460 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms