RNA–Protein interactions for RNA: ENST00000473684.5

TMEM39A-206, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 3,043 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-206ENST00000473684 SEMA3EO15041 775 aa7.95□□□□□ -1.14
TMEM39A-206ENST00000473684 MKRN3Q13064 507 aaKnown RBP7.94□□□□□ -1.14
TMEM39A-206ENST00000473684 ILDR1Q86SU0 546 aaPredicted RBP7.93□□□□□ -1.14
TMEM39A-206ENST00000473684 CC2D2AQ9P2K1 1620 aa7.93□□□□□ -1.14
TMEM39A-206ENST00000473684 DDX27Q96GQ7 796 aaKnown RBP7.93□□□□□ -1.14
TMEM39A-206ENST00000473684 ARIH1Q9Y4X5 557 aaPredicted RBP7.93□□□□□ -1.14
TMEM39A-206ENST00000473684 TIE1P35590 1138 aa7.92□□□□□ -1.14
TMEM39A-206ENST00000473684 EIF4G1Q04637 1599 aaKnown RBP7.92□□□□□ -1.14
TMEM39A-206ENST00000473684 TTLL13PA6NNM8 815 aa7.91□□□□□ -1.14
TMEM39A-206ENST00000473684 CAMK2BQ13554 666 aa7.91□□□□□ -1.14
TMEM39A-206ENST00000473684 ZC3H15Q8WU90 426 aaKnown RBP7.91□□□□□ -1.14
TMEM39A-206ENST00000473684 CUX2O14529 1486 aa7.91□□□□□ -1.14
TMEM39A-206ENST00000473684 TMEM132AQ24JP5 1023 aa7.89□□□□□ -1.15
TMEM39A-206ENST00000473684 BMP2KQ9NSY1 1161 aaPredicted RBP7.88□□□□□ -1.15
TMEM39A-206ENST00000473684 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.88□□□□□ -1.15
TMEM39A-206ENST00000473684 GTF3C3Q9Y5Q9 886 aa7.88□□□□□ -1.15
TMEM39A-206ENST00000473684 PEG3Q9GZU2 1588 aa7.86□□□□□ -1.15
TMEM39A-206ENST00000473684 NEUROD1Q13562 356 aa7.86□□□□□ -1.15
TMEM39A-206ENST00000473684 SMARCA2P51531 1590 aa7.85□□□□□ -1.15
TMEM39A-206ENST00000473684 SMYD5Q6GMV2 418 aa7.85□□□□□ -1.15
TMEM39A-206ENST00000473684 GPHNQ9NQX3 736 aaPredicted RBP7.85□□□□□ -1.15
TMEM39A-206ENST00000473684 TRIM35Q9UPQ4 493 aa7.85□□□□□ -1.15
TMEM39A-206ENST00000473684 GALR2O43603 387 aaPredicted RBP7.84□□□□□ -1.15
TMEM39A-206ENST00000473684 PPP1R15BQ5SWA1 713 aa7.84□□□□□ -1.15
TMEM39A-206ENST00000473684 ANP32EQ9BTT0 268 aa7.84□□□□□ -1.16
TMEM39A-206ENST00000473684 BRPF1P55201 1214 aaPredicted RBP7.83□□□□□ -1.16
TMEM39A-206ENST00000473684 HMGXB3Q12766 1538 aa7.82□□□□□ -1.16
TMEM39A-206ENST00000473684 ZMYND10O75800 440 aa7.82□□□□□ -1.16
TMEM39A-206ENST00000473684 DPY19L2Q6NUT2 758 aa7.82□□□□□ -1.16
TMEM39A-206ENST00000473684 SLC24A3Q9HC58 644 aa7.81□□□□□ -1.16
TMEM39A-206ENST00000473684 TIMELESSQ9UNS1 1208 aa7.81□□□□□ -1.16
TMEM39A-206ENST00000473684 MICALL2Q8IY33 904 aa7.8□□□□□ -1.16
TMEM39A-206ENST00000473684 CLCN6P51797 869 aa7.8□□□□□ -1.16
TMEM39A-206ENST00000473684 PDCD7Q8N8D1 485 aaKnown RBP7.8□□□□□ -1.16
TMEM39A-206ENST00000473684 MLLT3P42568 568 aaPredicted RBP7.79□□□□□ -1.16
TMEM39A-206ENST00000473684 DSG2Q14126 1118 aa7.79□□□□□ -1.16
TMEM39A-206ENST00000473684 EMILIN3Q9NT22 766 aa7.79□□□□□ -1.16
TMEM39A-206ENST00000473684 ATN1P54259 1190 aaPredicted RBP7.78□□□□□ -1.16
TMEM39A-206ENST00000473684 PRDM2Q13029 1718 aa7.78□□□□□ -1.16
TMEM39A-206ENST00000473684 IRX5P78411 483 aaPredicted RBP7.77□□□□□ -1.17
TMEM39A-206ENST00000473684 FOXK1P85037 733 aa7.77□□□□□ -1.17
TMEM39A-206ENST00000473684 EVX2Q03828 476 aa7.77□□□□□ -1.17
TMEM39A-206ENST00000473684 BARGINQ6ZT62 677 aa7.77□□□□□ -1.17
TMEM39A-206ENST00000473684 DPYSL4O14531 572 aa7.76□□□□□ -1.17
TMEM39A-206ENST00000473684 TMEM121BQ9BXQ6 578 aaPredicted RBP7.76□□□□□ -1.17
TMEM39A-206ENST00000473684 RBM26Q5T8P6 1007 aaKnown RBP7.76□□□□□ -1.17
TMEM39A-206ENST00000473684 TMC2Q8TDI7 906 aa7.76□□□□□ -1.17
TMEM39A-206ENST00000473684 HAX1O00165 279 aa7.76□□□□□ -1.17
TMEM39A-206ENST00000473684 NEUROD2Q15784 382 aa7.76□□□□□ -1.17
TMEM39A-206ENST00000473684 SPDYE16A6NNV3 312 aaPredicted RBP7.75□□□□□ -1.17
TMEM39A-206ENST00000473684 ATMINO43313 823 aaPredicted RBP7.75□□□□□ -1.17
TMEM39A-206ENST00000473684 PDIA6Q15084 440 aa7.75□□□□□ -1.17
TMEM39A-206ENST00000473684 ASTLQ6HA08 431 aaPredicted RBP7.75□□□□□ -1.17
TMEM39A-206ENST00000473684 IER5LQ5T953 404 aa7.74□□□□□ -1.17
TMEM39A-206ENST00000473684 OCEL1Q9H607 264 aa7.74□□□□□ -1.17
TMEM39A-206ENST00000473684 TRIM26Q12899 539 aaPredicted RBP7.74□□□□□ -1.17
TMEM39A-206ENST00000473684 GPIHBP1Q8IV16 184 aa7.74□□□□□ -1.17
TMEM39A-206ENST00000473684 KIF3CO14782 793 aa7.73□□□□□ -1.17
TMEM39A-206ENST00000473684 BOLA1Q9Y3E2 137 aa7.73□□□□□ -1.17
TMEM39A-206ENST00000473684 PLPP6Q8IY26 295 aa7.72□□□□□ -1.17
TMEM39A-206ENST00000473684 CECR2Q9BXF3 1484 aa7.72□□□□□ -1.17
TMEM39A-206ENST00000473684 C2orf72A6NCS6 295 aa7.71□□□□□ -1.17
TMEM39A-206ENST00000473684 THOC2Q8NI27 1593 aaKnown RBP7.71□□□□□ -1.18
TMEM39A-206ENST00000473684 AK7Q96M32 723 aa7.7□□□□□ -1.18
TMEM39A-206ENST00000473684 NCAPD3P42695 1498 aa7.69□□□□□ -1.18
TMEM39A-206ENST00000473684 DAXXQ9UER7 740 aaPredicted RBP7.68□□□□□ -1.18
TMEM39A-206ENST00000473684 LAMC3Q9Y6N6 1575 aa7.68□□□□□ -1.18
TMEM39A-206ENST00000473684 G3V3G9 751 aa7.68□□□□□ -1.18
TMEM39A-206ENST00000473684 PLCG2P16885 1265 aa7.67□□□□□ -1.18
TMEM39A-206ENST00000473684 KRI1Q8N9T8 703 aaKnown RBP7.67□□□□□ -1.18
TMEM39A-206ENST00000473684 GPR37O15354 613 aa7.66□□□□□ -1.18
TMEM39A-206ENST00000473684 L3MBTL3Q96JM7 780 aaPredicted RBP7.65□□□□□ -1.18
TMEM39A-206ENST00000473684 MAP3K9P80192 1104 aa7.65□□□□□ -1.18
TMEM39A-206ENST00000473684 TMEM92Q6UXU6 159 aa7.65□□□□□ -1.18
TMEM39A-206ENST00000473684 OXER1Q8TDS5 423 aa7.63□□□□□ -1.19
TMEM39A-206ENST00000473684 GPBP1L1Q9HC44 474 aaPredicted RBP7.63□□□□□ -1.19
TMEM39A-206ENST00000473684 TRIM66O15016 1216 aa7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 GABBR2O75899 941 aa7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 CLSPNQ9HAW4 1339 aa7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 GRXCR2A6NFK2 248 aa7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 PTGER2P43116 358 aa7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 C14orf37Q86TY3 774 aa7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 COLQQ9Y215 455 aaPredicted RBP7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 WDR97A6NE52 1622 aa7.62□□□□□ -1.19
TMEM39A-206ENST00000473684 OSBPP22059 807 aa7.61□□□□□ -1.19
TMEM39A-206ENST00000473684 UPF1Q92900 1129 aaKnown RBP eCLIP7.61□□□□□ -1.19
TMEM39A-206ENST00000473684 PDE4DQ08499 809 aa7.6□□□□□ -1.19
TMEM39A-206ENST00000473684 SEC24BO95487 1268 aa7.6□□□□□ -1.19
TMEM39A-206ENST00000473684 KDM4CQ9H3R0 1056 aa7.6□□□□□ -1.19
TMEM39A-206ENST00000473684 EIF5BO60841 1220 aaKnown RBP7.59□□□□□ -1.19
TMEM39A-206ENST00000473684 SMARCA4P51532 1647 aa7.59□□□□□ -1.19
TMEM39A-206ENST00000473684 NUTM2FA1L443 756 aa7.58□□□□□ -1.2
TMEM39A-206ENST00000473684 MINK1Q8N4C8 1332 aaPredicted RBP7.58□□□□□ -1.2
TMEM39A-206ENST00000473684 POTEFA5A3E0 1075 aa7.58□□□□□ -1.2
TMEM39A-206ENST00000473684 UBE2Q2Q8WVN8 375 aa7.58□□□□□ -1.2
TMEM39A-206ENST00000473684 DCBLD2Q96PD2 775 aa7.57□□□□□ -1.2
TMEM39A-206ENST00000473684 SCRIBQ14160 1630 aa7.57□□□□□ -1.2
TMEM39A-206ENST00000473684 SLC39A7Q92504 469 aa7.57□□□□□ -1.2
TMEM39A-206ENST00000473684 DDX12PQ92771 950 aa7.57□□□□□ -1.2
TMEM39A-206ENST00000473684 MAP2K5Q13163 448 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms