RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-222ENST00000473373 ADAMTSL3P82987 1691 aa18.4■□□□□ 0.54
CPNE1-222ENST00000473373 DENND4BO75064 1496 aaPredicted RBP18.39■□□□□ 0.54
CPNE1-222ENST00000473373 PLCH2O75038 1416 aa18.37■□□□□ 0.53
CPNE1-222ENST00000473373 FRMPD1Q5SYB0 1578 aa18.36■□□□□ 0.53
CPNE1-222ENST00000473373 EFCAB2Q5VUJ9 269 aa18.36■□□□□ 0.53
CPNE1-222ENST00000473373 MYT1LQ9UL68 1186 aa18.36■□□□□ 0.53
CPNE1-222ENST00000473373 CDC42BPBQ9Y5S2 1711 aa18.36■□□□□ 0.53
CPNE1-222ENST00000473373 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
CPNE1-222ENST00000473373 CDC42BPAQ5VT25 1732 aa18.35■□□□□ 0.53
CPNE1-222ENST00000473373 PREX2Q70Z35 1606 aa18.34■□□□□ 0.53
CPNE1-222ENST00000473373 MTUS2Q5JR59 1369 aa18.33■□□□□ 0.53
CPNE1-222ENST00000473373 MADDQ8WXG6 1647 aa18.33■□□□□ 0.52
CPNE1-222ENST00000473373 SCAPERQ9BY12 1400 aa18.32■□□□□ 0.52
CPNE1-222ENST00000473373 BCORL1Q5H9F3 1711 aa18.32■□□□□ 0.52
CPNE1-222ENST00000473373 ARHGEF40Q8TER5 1519 aa18.3■□□□□ 0.52
CPNE1-222ENST00000473373 ZFYVE16Q7Z3T8 1539 aa18.29■□□□□ 0.52
CPNE1-222ENST00000473373 HSPA2P54652 639 aa18.28■□□□□ 0.52
CPNE1-222ENST00000473373 ZNF777Q9ULD5 760 aaPredicted RBP18.28■□□□□ 0.52
CPNE1-222ENST00000473373 LMTK3Q96Q04 1460 aa18.27■□□□□ 0.52
CPNE1-222ENST00000473373 ZMYM4Q5VZL5 1548 aa18.27■□□□□ 0.51
CPNE1-222ENST00000473373 EHBP1L1Q8N3D4 1523 aa18.27■□□□□ 0.51
CPNE1-222ENST00000473373 POGZQ7Z3K3 1410 aa18.26■□□□□ 0.51
CPNE1-222ENST00000473373 ITSN2Q9NZM3 1697 aa18.26■□□□□ 0.51
CPNE1-222ENST00000473373 RIMS1Q86UR5 1692 aaKnown RBP18.25■□□□□ 0.51
CPNE1-222ENST00000473373 MLECQ14165 292 aa18.25■□□□□ 0.51
CPNE1-222ENST00000473373 CCNB3Q8WWL7 1395 aa18.24■□□□□ 0.51
CPNE1-222ENST00000473373 ZNF518AQ6AHZ1 1483 aa18.24■□□□□ 0.51
CPNE1-222ENST00000473373 SUPT6HQ7KZ85 1726 aaKnown RBP18.23■□□□□ 0.51
CPNE1-222ENST00000473373 MAGI2Q86UL8 1455 aa18.22■□□□□ 0.51
CPNE1-222ENST00000473373 VPS8Q8N3P4 1428 aa18.22■□□□□ 0.51
CPNE1-222ENST00000473373 YEATS2Q9ULM3 1422 aa18.22■□□□□ 0.51
CPNE1-222ENST00000473373 ABCC1P33527 1531 aa18.21■□□□□ 0.51
CPNE1-222ENST00000473373 TIAM1Q13009 1591 aa18.2■□□□□ 0.5
CPNE1-222ENST00000473373 APLP2Q06481 763 aa18.19■□□□□ 0.5
CPNE1-222ENST00000473373 CFDP1Q9UEE9 299 aaPredicted RBP18.19■□□□□ 0.5
CPNE1-222ENST00000473373 SENP3Q9H4L4 574 aaPredicted RBP18.18■□□□□ 0.5
CPNE1-222ENST00000473373 SAMD9LQ8IVG5 1584 aa18.17■□□□□ 0.5
CPNE1-222ENST00000473373 AFAP1Q8N556 730 aa18.17■□□□□ 0.5
CPNE1-222ENST00000473373 PHF23Q9BUL5 403 aaPredicted RBP18.17■□□□□ 0.5
CPNE1-222ENST00000473373 SIGLEC1Q9BZZ2 1709 aa18.17■□□□□ 0.5
CPNE1-222ENST00000473373 SYCP2Q9BX26 1530 aa18.17■□□□□ 0.5
CPNE1-222ENST00000473373 GPATCH8Q9UKJ3 1502 aaKnown RBP18.17■□□□□ 0.5
CPNE1-222ENST00000473373 FER1L4A9Z1Z3 1794 aa18.17■□□□□ 0.5
CPNE1-222ENST00000473373 KDM5CP41229 1560 aa18.16■□□□□ 0.5
CPNE1-222ENST00000473373 C9orf84Q5VXU9 1444 aa18.15■□□□□ 0.5
CPNE1-222ENST00000473373 ATP10AO60312 1499 aa18.14■□□□□ 0.5
CPNE1-222ENST00000473373 PLEKHH2Q8IVE3 1493 aa18.14■□□□□ 0.49
CPNE1-222ENST00000473373 CERKQ8TCT0 537 aa18.12■□□□□ 0.49
CPNE1-222ENST00000473373 TRAPPC8Q9Y2L5 1435 aa18.12■□□□□ 0.49
CPNE1-222ENST00000473373 ABCA6Q8N139 1617 aa18.12■□□□□ 0.49
CPNE1-222ENST00000473373 CEBPAP49715 358 aaPredicted RBP18.11■□□□□ 0.49
CPNE1-222ENST00000473373 HNRNPMP52272 730 aaKnown RBP eCLIP18.11■□□□□ 0.49
CPNE1-222ENST00000473373 ARHGEF12Q9NZN5 1544 aa18.11■□□□□ 0.49
CPNE1-222ENST00000473373 DIP2CQ9Y2E4 1556 aa18.11■□□□□ 0.49
CPNE1-222ENST00000473373 KIDINS220Q9ULH0 1771 aa18.1■□□□□ 0.49
CPNE1-222ENST00000473373 NCOA2Q15596 1464 aa18.1■□□□□ 0.49
CPNE1-222ENST00000473373 LRRC9Q6ZRR7 1453 aa18.08■□□□□ 0.49
CPNE1-222ENST00000473373 SPAG9O60271 1321 aaKnown RBP18.08■□□□□ 0.49
CPNE1-222ENST00000473373 MLH3Q9UHC1 1453 aa18.07■□□□□ 0.48
CPNE1-222ENST00000473373 ESF1Q9H501 851 aaKnown RBP18.06■□□□□ 0.48
CPNE1-222ENST00000473373 ATP7AQ04656 1500 aa18.05■□□□□ 0.48
CPNE1-222ENST00000473373 MAP3K1Q13233 1512 aa18.04■□□□□ 0.48
CPNE1-222ENST00000473373 KIAA1107Q9UPP5 1409 aa18.04■□□□□ 0.48
CPNE1-222ENST00000473373 ADGBQ8N7X0 1667 aa18.03■□□□□ 0.48
CPNE1-222ENST00000473373 ZNF644Q9H582 1327 aaPredicted RBP18.02■□□□□ 0.48
CPNE1-222ENST00000473373 CAMSAP2Q08AD1 1489 aa18.02■□□□□ 0.48
CPNE1-222ENST00000473373 REREQ9P2R6 1566 aa18.02■□□□□ 0.48
CPNE1-222ENST00000473373 INO80Q9ULG1 1556 aaPredicted RBP18.01■□□□□ 0.47
CPNE1-222ENST00000473373 KANK4Q5T7N3 995 aaPredicted RBP17.99■□□□□ 0.47
CPNE1-222ENST00000473373 PREX1Q8TCU6 1659 aa17.97■□□□□ 0.47
CPNE1-222ENST00000473373 CCDC141Q6ZP82 1450 aa17.97■□□□□ 0.47
CPNE1-222ENST00000473373 DMRT2Q9Y5R5 561 aa17.96■□□□□ 0.47
CPNE1-222ENST00000473373 AGLP35573 1532 aa17.95■□□□□ 0.46
CPNE1-222ENST00000473373 A2MP01023 1474 aa17.95■□□□□ 0.46
CPNE1-222ENST00000473373 TSPY4P0CV99 314 aa17.94■□□□□ 0.46
CPNE1-222ENST00000473373 TSPY10P0CW01 314 aa17.94■□□□□ 0.46
CPNE1-222ENST00000473373 MYOM3Q5VTT5 1437 aa17.94■□□□□ 0.46
CPNE1-222ENST00000473373 UHRF1BP1Q6BDS2 1440 aa17.94■□□□□ 0.46
CPNE1-222ENST00000473373 RSPH4AQ5TD94 716 aa17.93■□□□□ 0.46
CPNE1-222ENST00000473373 C3P01024 1663 aa17.93■□□□□ 0.46
CPNE1-222ENST00000473373 ARHGEF5Q12774 1597 aa17.92■□□□□ 0.46
CPNE1-222ENST00000473373 MBD5Q9P267 1494 aa17.92■□□□□ 0.46
CPNE1-222ENST00000473373 STRCQ7RTU9 1775 aa17.91■□□□□ 0.46
CPNE1-222ENST00000473373 CLTCQ00610 1675 aaKnown RBP17.91■□□□□ 0.46
CPNE1-222ENST00000473373 SETD1BQ9UPS6 1966 aaKnown RBP17.91■□□□□ 0.46
CPNE1-222ENST00000473373 GGT6Q6P531 493 aa17.9■□□□□ 0.46
CPNE1-222ENST00000473373 PTPN23Q9H3S7 1636 aa17.9■□□□□ 0.46
CPNE1-222ENST00000473373 DISP3Q9P2K9 1392 aa17.9■□□□□ 0.46
CPNE1-222ENST00000473373 RTEL1-TNFRSF6BF6WH68 1400 aa17.89■□□□□ 0.46
CPNE1-222ENST00000473373 MIA2Q96PC5 1412 aa17.89■□□□□ 0.45
CPNE1-222ENST00000473373 PLXNC1O60486 1568 aa17.88■□□□□ 0.45
CPNE1-222ENST00000473373 ILDR2Q71H61 639 aa17.88■□□□□ 0.45
CPNE1-222ENST00000473373 MROH2AA6NES4 1674 aa17.87■□□□□ 0.45
CPNE1-222ENST00000473373 CNTLNQ9NXG0 1405 aa17.87■□□□□ 0.45
CPNE1-222ENST00000473373 CROCC2H7BZ55 1655 aa17.85■□□□□ 0.45
CPNE1-222ENST00000473373 PTPRTO14522 1441 aa17.83■□□□□ 0.45
CPNE1-222ENST00000473373 KIF3BO15066 747 aa17.83■□□□□ 0.44
CPNE1-222ENST00000473373 MAST1Q9Y2H9 1570 aa17.82■□□□□ 0.44
CPNE1-222ENST00000473373 DHX29Q7Z478 1369 aaKnown RBP17.81■□□□□ 0.44
CPNE1-222ENST00000473373 FGD6Q6ZV73 1430 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms