RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 NPM1P06748 294 aaKnown RBP eCLIP11.31□□□□□ -0.6
COL6A3-210ENST00000473258 CCDC9Q9Y3X0 531 aaKnown RBP11.31□□□□□ -0.6
COL6A3-210ENST00000473258 TULP1O00294 542 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-210ENST00000473258 CCDC191Q8NCU4 936 aa11.3□□□□□ -0.6
COL6A3-210ENST00000473258 USP8P40818 1118 aa11.3□□□□□ -0.6
COL6A3-210ENST00000473258 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
COL6A3-210ENST00000473258 SKOR2Q2VWA4 1001 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-210ENST00000473258 DIAPH3Q9NSV4 1193 aa11.28□□□□□ -0.6
COL6A3-210ENST00000473258 BCL11BQ9C0K0 894 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-210ENST00000473258 SSR1P43307 286 aaKnown RBP11.27□□□□□ -0.61
COL6A3-210ENST00000473258 PHF14O94880 888 aa11.27□□□□□ -0.61
COL6A3-210ENST00000473258 ARGLU1Q9NWB6 273 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-210ENST00000473258 PDCL3Q9H2J4 239 aa11.26□□□□□ -0.61
COL6A3-210ENST00000473258 HSP90B1P14625 803 aaKnown RBP11.26□□□□□ -0.61
COL6A3-210ENST00000473258 BRD2P25440 801 aaKnown RBP11.26□□□□□ -0.61
COL6A3-210ENST00000473258 NAP1L2Q9ULW6 460 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-210ENST00000473258 HMGN5P82970 282 aaKnown RBP11.25□□□□□ -0.61
COL6A3-210ENST00000473258 DYDC1Q8WWB3 177 aa11.25□□□□□ -0.61
COL6A3-210ENST00000473258 E9PSI1 815 aa11.24□□□□□ -0.61
COL6A3-210ENST00000473258 GNL2Q13823 731 aaKnown RBP11.24□□□□□ -0.61
COL6A3-210ENST00000473258 CHMP4AQ9BY43 222 aa11.24□□□□□ -0.61
COL6A3-210ENST00000473258 TPM4P67936 248 aa11.23□□□□□ -0.61
COL6A3-210ENST00000473258 HMMRO75330 724 aa11.23□□□□□ -0.61
COL6A3-210ENST00000473258 GPATCH11Q8N954 259 aa11.23□□□□□ -0.61
COL6A3-210ENST00000473258 MRE11P49959 708 aa11.23□□□□□ -0.61
COL6A3-210ENST00000473258 GIMAP7Q8NHV1 300 aa11.23□□□□□ -0.61
COL6A3-210ENST00000473258 LEKR1Q6ZMV7 388 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 CFAP44Q96MT7 982 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 HSP90B2PQ58FF3 399 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 PLCD3Q8N3E9 789 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 PLCD4Q9BRC7 762 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 ACBD3Q9H3P7 528 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 CGNQ9P2M7 1197 aaKnown RBP11.22□□□□□ -0.61
COL6A3-210ENST00000473258 RSPH4AQ5TD94 716 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 CCAR2Q8N163 923 aaKnown RBP11.22□□□□□ -0.61
COL6A3-210ENST00000473258 ZNF592Q92610 1267 aa11.22□□□□□ -0.61
COL6A3-210ENST00000473258 ZHX1Q9UKY1 873 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-210ENST00000473258 FTSJ3Q8IY81 847 aaKnown RBP11.21□□□□□ -0.61
COL6A3-210ENST00000473258 FRAT1Q92837 279 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-210ENST00000473258 DDX49Q9Y6V7 483 aaKnown RBP11.21□□□□□ -0.61
COL6A3-210ENST00000473258 WWC1Q8IX03 1113 aa11.21□□□□□ -0.61
COL6A3-210ENST00000473258 TPM3P06753 285 aa11.2□□□□□ -0.62
COL6A3-210ENST00000473258 HIRIP3Q9BW71 556 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-210ENST00000473258 CALCOCO1Q9P1Z2 691 aa11.19□□□□□ -0.62
COL6A3-210ENST00000473258 CCER2I3L3R5 266 aa11.19□□□□□ -0.62
COL6A3-210ENST00000473258 CLGNO14967 610 aa11.19□□□□□ -0.62
COL6A3-210ENST00000473258 KIAA1211Q6ZU35 1233 aa11.19□□□□□ -0.62
COL6A3-210ENST00000473258 AK7Q96M32 723 aa11.18□□□□□ -0.62
COL6A3-210ENST00000473258 DNAJC2Q99543 621 aaKnown RBP11.18□□□□□ -0.62
COL6A3-210ENST00000473258 RBM25P49756 843 aaKnown RBP11.18□□□□□ -0.62
COL6A3-210ENST00000473258 NFKBIBQ15653 356 aa11.18□□□□□ -0.62
COL6A3-210ENST00000473258 EIF4G2P78344 907 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL6A3-210ENST00000473258 MCCP23508 829 aa11.18□□□□□ -0.62
COL6A3-210ENST00000473258 TNNT1P13805 278 aa11.17□□□□□ -0.62
COL6A3-210ENST00000473258 CCDC70Q6NSX1 233 aa11.17□□□□□ -0.62
COL6A3-210ENST00000473258 KIF3AQ9Y496 699 aa11.17□□□□□ -0.62
COL6A3-210ENST00000473258 PRDM10Q9NQV6 1147 aa11.17□□□□□ -0.62
COL6A3-210ENST00000473258 CDR1P51861 262 aa11.17□□□□□ -0.62
COL6A3-210ENST00000473258 OS9Q13438 667 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-210ENST00000473258 PAIP2Q9BPZ3 127 aaKnown RBP11.16□□□□□ -0.62
COL6A3-210ENST00000473258 IPO4Q8TEX9 1081 aaKnown RBP11.16□□□□□ -0.62
COL6A3-210ENST00000473258 CHMP4BQ9H444 224 aaKnown RBP11.16□□□□□ -0.62
COL6A3-210ENST00000473258 MS4A1P11836 297 aa11.15□□□□□ -0.62
COL6A3-210ENST00000473258 FGD1P98174 961 aa11.15□□□□□ -0.62
COL6A3-210ENST00000473258 DCTN1Q14203 1278 aa11.15□□□□□ -0.62
COL6A3-210ENST00000473258 AXDND1Q5T1B0 1012 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-210ENST00000473258 SLC4A3P48751 1232 aa11.14□□□□□ -0.63
COL6A3-210ENST00000473258 CCDC39Q9UFE4 941 aa11.14□□□□□ -0.63
COL6A3-210ENST00000473258 PDE4AP27815 886 aa11.14□□□□□ -0.63
COL6A3-210ENST00000473258 GTF2A1P52655 376 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-210ENST00000473258 MNS1Q8NEH6 495 aa11.14□□□□□ -0.63
COL6A3-210ENST00000473258 SENP3-EIF4A1A0A087X0R7 540 aa11.13□□□□□ -0.63
COL6A3-210ENST00000473258 UQCRHLA0A096LP55 91 aa11.13□□□□□ -0.63
COL6A3-210ENST00000473258 UQCRHP07919 91 aa11.13□□□□□ -0.63
COL6A3-210ENST00000473258 ERICH4A6NGS2 130 aa11.13□□□□□ -0.63
COL6A3-210ENST00000473258 KCNJ4P48050 445 aa11.12□□□□□ -0.63
COL6A3-210ENST00000473258 FAM193AP78312 1265 aa11.12□□□□□ -0.63
COL6A3-210ENST00000473258 INCENPQ9NQS7 918 aa11.11□□□□□ -0.63
COL6A3-210ENST00000473258 TDO2P48775 406 aa11.11□□□□□ -0.63
COL6A3-210ENST00000473258 KIF16BQ96L93 1317 aa11.11□□□□□ -0.63
COL6A3-210ENST00000473258 ESPNB1AK53 854 aa11.11□□□□□ -0.63
COL6A3-210ENST00000473258 KIAA0754O94854 1291 aa11.1□□□□□ -0.63
COL6A3-210ENST00000473258 PDCL2Q8N4E4 241 aa11.1□□□□□ -0.63
COL6A3-210ENST00000473258 RUFY1Q96T51 708 aa11.1□□□□□ -0.63
COL6A3-210ENST00000473258 NASPP49321 788 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-210ENST00000473258 U2SURPO15042 1029 aaKnown RBP11.1□□□□□ -0.63
COL6A3-210ENST00000473258 HOMER1Q86YM7 354 aa11.1□□□□□ -0.63
COL6A3-210ENST00000473258 LMOD3Q0VAK6 560 aa11.1□□□□□ -0.63
COL6A3-210ENST00000473258 NCBP3Q53F19 620 aaKnown RBP11.09□□□□□ -0.63
COL6A3-210ENST00000473258 PES1O00541 588 aaKnown RBP11.09□□□□□ -0.63
COL6A3-210ENST00000473258 GOLGA6L19H0YKK7 550 aa11.09□□□□□ -0.63
COL6A3-210ENST00000473258 TIGD1Q96MW7 591 aa11.09□□□□□ -0.63
COL6A3-210ENST00000473258 ERCC4Q92889 916 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-210ENST00000473258 IFT57Q9NWB7 429 aa11.09□□□□□ -0.63
COL6A3-210ENST00000473258 CCDC180Q9P1Z9 1646 aa11.08□□□□□ -0.64
COL6A3-210ENST00000473258 CCDC173Q0VFZ6 552 aa11.08□□□□□ -0.64
COL6A3-210ENST00000473258 TMCO5BA8MYB1 307 aa11.08□□□□□ -0.64
COL6A3-210ENST00000473258 CBX1P83916 185 aa11.07□□□□□ -0.64
COL6A3-210ENST00000473258 CHMP5Q9NZZ3 219 aa11.07□□□□□ -0.64
COL6A3-210ENST00000473258 MFAP1P55081 439 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms