RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 CDC42BPBQ9Y5S2 1711 aa20.84■□□□□ 0.93
TPM3-216ENST00000473036 FANCAO15360 1455 aa20.82■□□□□ 0.92
TPM3-216ENST00000473036 CFAP74Q9C0B2 1584 aa20.82■□□□□ 0.92
TPM3-216ENST00000473036 ARHGEF40Q8TER5 1519 aa20.82■□□□□ 0.92
TPM3-216ENST00000473036 CDC42BPAQ5VT25 1732 aa20.81■□□□□ 0.92
TPM3-216ENST00000473036 DENND4BO75064 1496 aaPredicted RBP20.81■□□□□ 0.92
TPM3-216ENST00000473036 ARID4BQ4LE39 1312 aaPredicted RBP20.8■□□□□ 0.92
TPM3-216ENST00000473036 AKNAQ7Z591 1439 aa20.8■□□□□ 0.92
TPM3-216ENST00000473036 MTUS2Q5JR59 1369 aa20.8■□□□□ 0.92
TPM3-216ENST00000473036 EHBP1L1Q8N3D4 1523 aa20.79■□□□□ 0.92
TPM3-216ENST00000473036 MADDQ8WXG6 1647 aa20.79■□□□□ 0.92
TPM3-216ENST00000473036 KANK4Q5T7N3 995 aaPredicted RBP20.79■□□□□ 0.92
TPM3-216ENST00000473036 LMTK3Q96Q04 1460 aa20.79■□□□□ 0.92
TPM3-216ENST00000473036 POGZQ7Z3K3 1410 aa20.78■□□□□ 0.92
TPM3-216ENST00000473036 PREX2Q70Z35 1606 aa20.78■□□□□ 0.92
TPM3-216ENST00000473036 MAP3K1Q13233 1512 aa20.78■□□□□ 0.92
TPM3-216ENST00000473036 GPATCH8Q9UKJ3 1502 aaKnown RBP20.78■□□□□ 0.92
TPM3-216ENST00000473036 LRRC9Q6ZRR7 1453 aa20.77■□□□□ 0.92
TPM3-216ENST00000473036 MAGI2Q86UL8 1455 aa20.76■□□□□ 0.91
TPM3-216ENST00000473036 ZMYM4Q5VZL5 1548 aa20.76■□□□□ 0.91
TPM3-216ENST00000473036 RICTORQ6R327 1708 aa20.75■□□□□ 0.91
TPM3-216ENST00000473036 ARHGAP5Q13017 1502 aa20.74■□□□□ 0.91
TPM3-216ENST00000473036 EFCAB2Q5VUJ9 269 aa20.72■□□□□ 0.91
TPM3-216ENST00000473036 NCOA2Q15596 1464 aa20.71■□□□□ 0.91
TPM3-216ENST00000473036 ARHGEF12Q9NZN5 1544 aa20.7■□□□□ 0.9
TPM3-216ENST00000473036 SUPT6HQ7KZ85 1726 aaKnown RBP20.7■□□□□ 0.9
TPM3-216ENST00000473036 SCAPERQ9BY12 1400 aa20.7■□□□□ 0.9
TPM3-216ENST00000473036 RIMS1Q86UR5 1692 aaKnown RBP20.69■□□□□ 0.9
TPM3-216ENST00000473036 ZFYVE16Q7Z3T8 1539 aa20.68■□□□□ 0.9
TPM3-216ENST00000473036 SAMD9LQ8IVG5 1584 aa20.68■□□□□ 0.9
TPM3-216ENST00000473036 CCNB3Q8WWL7 1395 aa20.67■□□□□ 0.9
TPM3-216ENST00000473036 ABCC1P33527 1531 aa20.66■□□□□ 0.9
TPM3-216ENST00000473036 ITSN2Q9NZM3 1697 aa20.64■□□□□ 0.89
TPM3-216ENST00000473036 ZNF644Q9H582 1327 aaPredicted RBP20.63■□□□□ 0.89
TPM3-216ENST00000473036 TRAPPC8Q9Y2L5 1435 aa20.62■□□□□ 0.89
TPM3-216ENST00000473036 AFAP1Q8N556 730 aa20.62■□□□□ 0.89
TPM3-216ENST00000473036 CFDP1Q9UEE9 299 aaPredicted RBP20.62■□□□□ 0.89
TPM3-216ENST00000473036 ZNF777Q9ULD5 760 aaPredicted RBP20.61■□□□□ 0.89
TPM3-216ENST00000473036 YEATS2Q9ULM3 1422 aa20.6■□□□□ 0.89
TPM3-216ENST00000473036 KDM5CP41229 1560 aa20.59■□□□□ 0.89
TPM3-216ENST00000473036 SYCP2Q9BX26 1530 aa20.59■□□□□ 0.89
TPM3-216ENST00000473036 ATP10AO60312 1499 aa20.57■□□□□ 0.88
TPM3-216ENST00000473036 HNRNPMP52272 730 aaKnown RBP eCLIP20.57■□□□□ 0.887e-7■■■□□ 16.5
TPM3-216ENST00000473036 APLP2Q06481 763 aa20.57■□□□□ 0.88
TPM3-216ENST00000473036 SIGLEC1Q9BZZ2 1709 aa20.57■□□□□ 0.88
TPM3-216ENST00000473036 ZNF518AQ6AHZ1 1483 aa20.56■□□□□ 0.88
TPM3-216ENST00000473036 C9orf84Q5VXU9 1444 aa20.55■□□□□ 0.88
TPM3-216ENST00000473036 FER1L4A9Z1Z3 1794 aa20.55■□□□□ 0.88
TPM3-216ENST00000473036 HSPA2P54652 639 aa20.55■□□□□ 0.88
TPM3-216ENST00000473036 CERKQ8TCT0 537 aa20.55■□□□□ 0.88
TPM3-216ENST00000473036 MBD5Q9P267 1494 aa20.55■□□□□ 0.88
TPM3-216ENST00000473036 KIAA1107Q9UPP5 1409 aa20.54■□□□□ 0.88
TPM3-216ENST00000473036 MYOM3Q5VTT5 1437 aa20.53■□□□□ 0.88
TPM3-216ENST00000473036 CAMSAP2Q08AD1 1489 aa20.52■□□□□ 0.88
TPM3-216ENST00000473036 DMRT2Q9Y5R5 561 aa20.52■□□□□ 0.88
TPM3-216ENST00000473036 KIDINS220Q9ULH0 1771 aa20.51■□□□□ 0.87
TPM3-216ENST00000473036 MLH3Q9UHC1 1453 aa20.5■□□□□ 0.87
TPM3-216ENST00000473036 PREX1Q8TCU6 1659 aa20.5■□□□□ 0.87
TPM3-216ENST00000473036 PLEKHH2Q8IVE3 1493 aa20.5■□□□□ 0.87
TPM3-216ENST00000473036 PPARGC1BQ86YN6 1023 aaKnown RBP20.49■□□□□ 0.87
TPM3-216ENST00000473036 ABCA6Q8N139 1617 aa20.49■□□□□ 0.87
TPM3-216ENST00000473036 DIP2CQ9Y2E4 1556 aa20.47■□□□□ 0.87
TPM3-216ENST00000473036 MLECQ14165 292 aa20.47■□□□□ 0.87
TPM3-216ENST00000473036 MIA2Q96PC5 1412 aa20.46■□□□□ 0.87
TPM3-216ENST00000473036 REREQ9P2R6 1566 aa20.46■□□□□ 0.87
TPM3-216ENST00000473036 INO80Q9ULG1 1556 aaPredicted RBP20.45■□□□□ 0.86
TPM3-216ENST00000473036 PLPPR3Q6T4P5 718 aa20.44■□□□□ 0.86
TPM3-216ENST00000473036 FGD6Q6ZV73 1430 aa20.43■□□□□ 0.86
TPM3-216ENST00000473036 ARHGEF5Q12774 1597 aa20.42■□□□□ 0.86
TPM3-216ENST00000473036 PTPN23Q9H3S7 1636 aa20.42■□□□□ 0.86
TPM3-216ENST00000473036 UHRF1BP1Q6BDS2 1440 aa20.42■□□□□ 0.86
TPM3-216ENST00000473036 SETD1BQ9UPS6 1966 aaKnown RBP20.41■□□□□ 0.86
TPM3-216ENST00000473036 SPAG9O60271 1321 aaKnown RBP20.41■□□□□ 0.86
TPM3-216ENST00000473036 ATP7AQ04656 1500 aa20.41■□□□□ 0.86
TPM3-216ENST00000473036 TCOF1Q13428 1488 aaKnown RBP20.4■□□□□ 0.86
TPM3-216ENST00000473036 CCDC141Q6ZP82 1450 aa20.4■□□□□ 0.86
TPM3-216ENST00000473036 AGLP35573 1532 aa20.37■□□□□ 0.85
TPM3-216ENST00000473036 MYT1LQ9UL68 1186 aa20.37■□□□□ 0.85
TPM3-216ENST00000473036 PTPRTO14522 1441 aa20.36■□□□□ 0.85
TPM3-216ENST00000473036 STRCQ7RTU9 1775 aa20.35■□□□□ 0.85
TPM3-216ENST00000473036 RTEL1-TNFRSF6BF6WH68 1400 aa20.35■□□□□ 0.85
TPM3-216ENST00000473036 CEBPAP49715 358 aaPredicted RBP20.34■□□□□ 0.85
TPM3-216ENST00000473036 ABCC5O15440 1437 aa20.34■□□□□ 0.85
TPM3-216ENST00000473036 PLXNC1O60486 1568 aa20.34■□□□□ 0.85
TPM3-216ENST00000473036 ADGBQ8N7X0 1667 aa20.33■□□□□ 0.85
TPM3-216ENST00000473036 CNTLNQ9NXG0 1405 aa20.33■□□□□ 0.84
TPM3-216ENST00000473036 RSPH4AQ5TD94 716 aa20.32■□□□□ 0.84
TPM3-216ENST00000473036 MAST1Q9Y2H9 1570 aa20.32■□□□□ 0.84
TPM3-216ENST00000473036 CROCC2H7BZ55 1655 aa20.32■□□□□ 0.84
TPM3-216ENST00000473036 IQSEC2Q5JU85 1478 aa20.31■□□□□ 0.84
TPM3-216ENST00000473036 ESF1Q9H501 851 aaKnown RBP20.31■□□□□ 0.84
TPM3-216ENST00000473036 DNMT1P26358 1616 aaKnown RBP20.31■□□□□ 0.84
TPM3-216ENST00000473036 A2MP01023 1474 aa20.3■□□□□ 0.84
TPM3-216ENST00000473036 DAPK1P53355 1430 aa20.29■□□□□ 0.84
TPM3-216ENST00000473036 C3P01024 1663 aa20.28■□□□□ 0.84
TPM3-216ENST00000473036 TSPY4P0CV99 314 aa20.26■□□□□ 0.83
TPM3-216ENST00000473036 TSPY10P0CW01 314 aa20.26■□□□□ 0.83
TPM3-216ENST00000473036 PTPRKQ15262 1439 aa20.26■□□□□ 0.83
TPM3-216ENST00000473036 FAM50AQ14320 339 aaKnown RBP20.25■□□□□ 0.83
TPM3-216ENST00000473036 NPATQ14207 1427 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms