RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 RIOK3O14730 519 aaKnown RBP16.48■□□□□ 0.23
SCN9A-206ENST00000472119 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.47■□□□□ 0.23
SCN9A-206ENST00000472119 ZFP91Q96JP5 570 aaPredicted RBP16.47■□□□□ 0.23
SCN9A-206ENST00000472119 ARSIQ5FYB1 569 aa16.45■□□□□ 0.22
SCN9A-206ENST00000472119 RNF25Q96BH1 459 aaPredicted RBP16.43■□□□□ 0.22
SCN9A-206ENST00000472119 ANKRD13DQ6ZTN6 518 aa16.42■□□□□ 0.22
SCN9A-206ENST00000472119 VGFO15240 615 aaPredicted RBP16.4■□□□□ 0.22
SCN9A-206ENST00000472119 PTGER2P43116 358 aa16.4■□□□□ 0.22
SCN9A-206ENST00000472119 KHSRPQ92945 711 aaKnown RBP eCLIP16.38■□□□□ 0.21
SCN9A-206ENST00000472119 ZNF316A6NFI3 1004 aaPredicted RBP16.35■□□□□ 0.21
SCN9A-206ENST00000472119 NLRP6P59044 892 aa16.31■□□□□ 0.2
SCN9A-206ENST00000472119 LSM11P83369 360 aaKnown RBP eCLIP16.28■□□□□ 0.2
SCN9A-206ENST00000472119 FBXO22Q8NEZ5 403 aa16.23■□□□□ 0.19
SCN9A-206ENST00000472119 BCL11BQ9C0K0 894 aaPredicted RBP16.23■□□□□ 0.19
SCN9A-206ENST00000472119 NUDT7P0C024 238 aa16.21■□□□□ 0.19
SCN9A-206ENST00000472119 STK24Q9Y6E0 443 aa16.2■□□□□ 0.18
SCN9A-206ENST00000472119 C2orf72A6NCS6 295 aa16.17■□□□□ 0.18
SCN9A-206ENST00000472119 TAOK2Q9UL54 1235 aa16.16■□□□□ 0.18
SCN9A-206ENST00000472119 PBX2P40425 430 aa16.15■□□□□ 0.18
SCN9A-206ENST00000472119 MFRPQ9BY79 579 aa16.14■□□□□ 0.17
SCN9A-206ENST00000472119 LHX6Q9UPM6 363 aa16.14■□□□□ 0.17
SCN9A-206ENST00000472119 AXIN2Q9Y2T1 843 aa16.14■□□□□ 0.17
SCN9A-206ENST00000472119 KIF3CO14782 793 aa16.13■□□□□ 0.17
SCN9A-206ENST00000472119 POTEEQ6S8J3 1075 aa16.09■□□□□ 0.17
SCN9A-206ENST00000472119 PCDHGA4Q9Y5G9 962 aa16.09■□□□□ 0.17
SCN9A-206ENST00000472119 STK25O00506 426 aa16.08■□□□□ 0.16
SCN9A-206ENST00000472119 PLA2G2EQ9NZK7 142 aa16.06■□□□□ 0.16
SCN9A-206ENST00000472119 TMC2Q8TDI7 906 aa16.04■□□□□ 0.16
SCN9A-206ENST00000472119 SLC34A2O95436 690 aa16.01■□□□□ 0.15
SCN9A-206ENST00000472119 HCSTQ9UBK5 93 aa16.01■□□□□ 0.15
SCN9A-206ENST00000472119 ADGRD1Q6QNK2 874 aa15.97■□□□□ 0.15
SCN9A-206ENST00000472119 ARHGAP33O14559 1287 aa15.95■□□□□ 0.14
SCN9A-206ENST00000472119 ECM2O94769 699 aaPredicted RBP15.92■□□□□ 0.14
SCN9A-206ENST00000472119 PSDA5PKW4 1024 aaPredicted RBP15.9■□□□□ 0.14
SCN9A-206ENST00000472119 NISCHQ9Y2I1 1504 aa15.87■□□□□ 0.13
SCN9A-206ENST00000472119 PPP1R37O75864 691 aa15.84■□□□□ 0.13
SCN9A-206ENST00000472119 PSEN2P49810 448 aa15.84■□□□□ 0.13
SCN9A-206ENST00000472119 DMRTA1Q5VZB9 504 aa15.84■□□□□ 0.13
SCN9A-206ENST00000472119 TK2O00142 265 aa15.82■□□□□ 0.12
SCN9A-206ENST00000472119 RGL2O15211 777 aa15.79■□□□□ 0.12
SCN9A-206ENST00000472119 HRO43593 1189 aa15.79■□□□□ 0.12
SCN9A-206ENST00000472119 KCTD12Q96CX2 325 aaKnown RBP15.79■□□□□ 0.12
SCN9A-206ENST00000472119 KDM4FA0A1W2PPD8 638 aa15.78■□□□□ 0.12
SCN9A-206ENST00000472119 PTCD2Q8WV60 388 aaKnown RBP15.78■□□□□ 0.12
SCN9A-206ENST00000472119 STAC3Q96MF2 364 aa15.78■□□□□ 0.12
SCN9A-206ENST00000472119 PPP4R3BQ5MIZ7 849 aa15.76■□□□□ 0.11
SCN9A-206ENST00000472119 PLPP6Q8IY26 295 aa15.73■□□□□ 0.11
SCN9A-206ENST00000472119 FOXK1P85037 733 aa15.7■□□□□ 0.1
SCN9A-206ENST00000472119 KCNK17Q96T54 332 aa15.69■□□□□ 0.1
SCN9A-206ENST00000472119 TBC1D12O60347 775 aa15.68■□□□□ 0.1
SCN9A-206ENST00000472119 PKD2Q13563 968 aa15.68■□□□□ 0.1
SCN9A-206ENST00000472119 KCNH8Q96L42 1107 aa15.68■□□□□ 0.1
SCN9A-206ENST00000472119 GPHNQ9NQX3 736 aaPredicted RBP15.65■□□□□ 0.1
SCN9A-206ENST00000472119 PTPN5P54829 565 aa15.64■□□□□ 0.09
SCN9A-206ENST00000472119 DSG2Q14126 1118 aa15.63■□□□□ 0.09
SCN9A-206ENST00000472119 VPS9D1Q9Y2B5 631 aa15.59■□□□□ 0.09
SCN9A-206ENST00000472119 ZNF454Q8N9F8 522 aa15.53■□□□□ 0.08
SCN9A-206ENST00000472119 UPF1Q92900 1129 aaKnown RBP eCLIP15.53■□□□□ 0.08
SCN9A-206ENST00000472119 OXER1Q8TDS5 423 aa15.48■□□□□ 0.07
SCN9A-206ENST00000472119 GOLGA8CPA6NN73 597 aa15.46■□□□□ 0.07
SCN9A-206ENST00000472119 THSD4Q6ZMP0 1018 aa15.46■□□□□ 0.07
SCN9A-206ENST00000472119 BCL2L12Q9HB09 334 aa15.46■□□□□ 0.07
SCN9A-206ENST00000472119 RGS20O76081 388 aa15.44■□□□□ 0.06
SCN9A-206ENST00000472119 HS6ST3Q8IZP7 471 aa15.44■□□□□ 0.06
SCN9A-206ENST00000472119 SLC4A5Q9BY07 1137 aa15.44■□□□□ 0.06
SCN9A-206ENST00000472119 IRX2Q9BZI1 471 aaPredicted RBP15.44■□□□□ 0.06
SCN9A-206ENST00000472119 PTPREP23469 700 aa15.42■□□□□ 0.06
SCN9A-206ENST00000472119 WNT2BQ93097 391 aa15.42■□□□□ 0.06
SCN9A-206ENST00000472119 IFFO2Q5TF58 517 aa15.41■□□□□ 0.06
SCN9A-206ENST00000472119 BHMG1C9JSJ3 638 aaPredicted RBP15.4■□□□□ 0.06
SCN9A-206ENST00000472119 MRPL50Q8N5N7 158 aaKnown RBP15.4■□□□□ 0.06
SCN9A-206ENST00000472119 A0A0G2JS52 829 aa15.39■□□□□ 0.05
SCN9A-206ENST00000472119 FOSBP53539 338 aa15.38■□□□□ 0.05
SCN9A-206ENST00000472119 ZBED2Q9BTP6 218 aa15.37■□□□□ 0.05
SCN9A-206ENST00000472119 PPP1R15BQ5SWA1 713 aa15.36■□□□□ 0.05
SCN9A-206ENST00000472119 CHGAP10645 457 aaKnown RBP15.34■□□□□ 0.05
SCN9A-206ENST00000472119 NBPF3Q9H094 633 aa15.32■□□□□ 0.04
SCN9A-206ENST00000472119 CRISPLD2Q9H0B8 497 aa15.32■□□□□ 0.04
SCN9A-206ENST00000472119 JPH4Q96JJ6 628 aa15.3■□□□□ 0.04
SCN9A-206ENST00000472119 ZDHHC16Q969W1 377 aa15.28■□□□□ 0.04
SCN9A-206ENST00000472119 ADAM33Q9BZ11 813 aa15.28■□□□□ 0.04
SCN9A-206ENST00000472119 EVI5O60447 810 aa15.27■□□□□ 0.04
SCN9A-206ENST00000472119 NKX1-1Q15270 411 aaPredicted RBP15.25■□□□□ 0.03
SCN9A-206ENST00000472119 ANO8Q9HCE9 1232 aaPredicted RBP15.25■□□□□ 0.03
SCN9A-206ENST00000472119 RYDENQ9NUL5 291 aaKnown RBP15.23■□□□□ 0.03
SCN9A-206ENST00000472119 PDE4AP27815 886 aa15.22■□□□□ 0.03
SCN9A-206ENST00000472119 NCKAP5LQ9HCH0 1330 aa15.21■□□□□ 0.03
SCN9A-206ENST00000472119 ANKK1Q8NFD2 765 aa15.19■□□□□ 0.02
SCN9A-206ENST00000472119 PPP1R3GB7ZBB8 358 aa15.16■□□□□ 0.02
SCN9A-206ENST00000472119 MAP3K9P80192 1104 aa15.16■□□□□ 0.02
SCN9A-206ENST00000472119 PROX2Q3B8N5 592 aa15.15■□□□□ 0.02
SCN9A-206ENST00000472119 RABGEF1Q9UJ41 708 aa15.15■□□□□ 0.02
SCN9A-206ENST00000472119 BCAMP50895 628 aa15.14■□□□□ 0.01
SCN9A-206ENST00000472119 ITGBL1O95965 494 aaPredicted RBP15.13■□□□□ 0.01
SCN9A-206ENST00000472119 LARP6Q9BRS8 491 aaKnown RBP15.13■□□□□ 0.01
SCN9A-206ENST00000472119 DNAJC5Q9H3Z4 198 aa15.13■□□□□ 0.01
SCN9A-206ENST00000472119 Q6ZNB5 142 aa15.12■□□□□ 0.01
SCN9A-206ENST00000472119 DDX27Q96GQ7 796 aaKnown RBP15.11■□□□□ 0.01
SCN9A-206ENST00000472119 COL9A1P20849 921 aa15.09■□□□□ 0.01
SCN9A-206ENST00000472119 PCDHGA10Q9Y5H3 936 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms