RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 SIGLEC1Q9BZZ2 1709 aa13.22□□□□□ -0.29
USP48-207ENST00000471752 EFCAB2Q5VUJ9 269 aa13.22□□□□□ -0.29
USP48-207ENST00000471752 LRRIQ1Q96JM4 1722 aa13.22□□□□□ -0.29
USP48-207ENST00000471752 ADAMTSL3P82987 1691 aa13.21□□□□□ -0.3
USP48-207ENST00000471752 TROQ12816 1431 aaPredicted RBP13.21□□□□□ -0.3
USP48-207ENST00000471752 RICTORQ6R327 1708 aa13.2□□□□□ -0.3
USP48-207ENST00000471752 CDK11AQ9UQ88 783 aaPredicted RBP13.2□□□□□ -0.3
USP48-207ENST00000471752 HECW1Q76N89 1606 aa13.19□□□□□ -0.3
USP48-207ENST00000471752 CASKIN1Q8WXD9 1431 aa13.19□□□□□ -0.3
USP48-207ENST00000471752 LOC105371045A0A1W2PR82 267 aa13.18□□□□□ -0.3
USP48-207ENST00000471752 CLIP1P30622 1438 aa13.18□□□□□ -0.3
USP48-207ENST00000471752 POGZQ7Z3K3 1410 aa13.18□□□□□ -0.3
USP48-207ENST00000471752 MADDQ8WXG6 1647 aa13.17□□□□□ -0.3
USP48-207ENST00000471752 CEBPAP49715 358 aaPredicted RBP13.17□□□□□ -0.3
USP48-207ENST00000471752 HSPA2P54652 639 aa13.17□□□□□ -0.3
USP48-207ENST00000471752 ARHGEF12Q9NZN5 1544 aa13.17□□□□□ -0.3
USP48-207ENST00000471752 PCF11O94913 1555 aaKnown RBP13.16□□□□□ -0.3
USP48-207ENST00000471752 ARHGEF40Q8TER5 1519 aa13.16□□□□□ -0.3
USP48-207ENST00000471752 BCORL1Q5H9F3 1711 aa13.16□□□□□ -0.3
USP48-207ENST00000471752 TRAPPC8Q9Y2L5 1435 aa13.15□□□□□ -0.3
USP48-207ENST00000471752 ZFYVE16Q7Z3T8 1539 aa13.14□□□□□ -0.31
USP48-207ENST00000471752 ZNF777Q9ULD5 760 aaPredicted RBP13.14□□□□□ -0.31
USP48-207ENST00000471752 ZMYM4Q5VZL5 1548 aa13.13□□□□□ -0.31
USP48-207ENST00000471752 ARHGAP5Q13017 1502 aa13.13□□□□□ -0.31
USP48-207ENST00000471752 ATP10AO60312 1499 aa13.12□□□□□ -0.31
USP48-207ENST00000471752 HNRNPMP52272 730 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP48-207ENST00000471752 MYT1LQ9UL68 1186 aa13.11□□□□□ -0.31
USP48-207ENST00000471752 ZNF644Q9H582 1327 aaPredicted RBP13.11□□□□□ -0.31
USP48-207ENST00000471752 MAGI2Q86UL8 1455 aa13.1□□□□□ -0.31
USP48-207ENST00000471752 RIMS1Q86UR5 1692 aaKnown RBP13.09□□□□□ -0.31
USP48-207ENST00000471752 CFAP74Q9C0B2 1584 aa13.09□□□□□ -0.31
USP48-207ENST00000471752 CDC42BPBQ9Y5S2 1711 aa13.09□□□□□ -0.31
USP48-207ENST00000471752 LMTK3Q96Q04 1460 aa13.09□□□□□ -0.31
USP48-207ENST00000471752 MYO5CQ9NQX4 1742 aa13.08□□□□□ -0.32
USP48-207ENST00000471752 GPATCH8Q9UKJ3 1502 aaKnown RBP13.08□□□□□ -0.32
USP48-207ENST00000471752 FYCO1Q9BQS8 1478 aa13.07□□□□□ -0.32
USP48-207ENST00000471752 CCDC18Q5T9S5 1454 aa13.06□□□□□ -0.32
USP48-207ENST00000471752 C9orf84Q5VXU9 1444 aa13.05□□□□□ -0.32
USP48-207ENST00000471752 ZNF518AQ6AHZ1 1483 aa13.05□□□□□ -0.32
USP48-207ENST00000471752 CEP162Q5TB80 1403 aa13.05□□□□□ -0.32
USP48-207ENST00000471752 KDM5CP41229 1560 aa13.04□□□□□ -0.32
USP48-207ENST00000471752 DIP2CQ9Y2E4 1556 aa13.03□□□□□ -0.32
USP48-207ENST00000471752 CFDP1Q9UEE9 299 aaPredicted RBP13.03□□□□□ -0.32
USP48-207ENST00000471752 MLH3Q9UHC1 1453 aa13.03□□□□□ -0.32
USP48-207ENST00000471752 ABCC1P33527 1531 aa13.03□□□□□ -0.32
USP48-207ENST00000471752 PREX2Q70Z35 1606 aa13.02□□□□□ -0.33
USP48-207ENST00000471752 ABCA6Q8N139 1617 aa13.02□□□□□ -0.33
USP48-207ENST00000471752 SAMD9LQ8IVG5 1584 aa13.01□□□□□ -0.33
USP48-207ENST00000471752 CDC42BPAQ5VT25 1732 aa13.01□□□□□ -0.33
USP48-207ENST00000471752 MTUS2Q5JR59 1369 aa13□□□□□ -0.33
USP48-207ENST00000471752 CCNB3Q8WWL7 1395 aa13□□□□□ -0.33
USP48-207ENST00000471752 SPAG9O60271 1321 aaKnown RBP12.99□□□□□ -0.33
USP48-207ENST00000471752 SYCP2Q9BX26 1530 aa12.98□□□□□ -0.33
USP48-207ENST00000471752 KANK4Q5T7N3 995 aaPredicted RBP12.98□□□□□ -0.33
USP48-207ENST00000471752 KIDINS220Q9ULH0 1771 aa12.98□□□□□ -0.33
USP48-207ENST00000471752 ITSN2Q9NZM3 1697 aa12.97□□□□□ -0.33
USP48-207ENST00000471752 FER1L4A9Z1Z3 1794 aa12.97□□□□□ -0.33
USP48-207ENST00000471752 MBD5Q9P267 1494 aa12.95□□□□□ -0.34
USP48-207ENST00000471752 GGT6Q6P531 493 aa12.94□□□□□ -0.34
USP48-207ENST00000471752 FBXO41Q8TF61 875 aa12.94□□□□□ -0.34
USP48-207ENST00000471752 KIAA1107Q9UPP5 1409 aa12.94□□□□□ -0.34
USP48-207ENST00000471752 TIAM1Q13009 1591 aa12.93□□□□□ -0.34
USP48-207ENST00000471752 AGLP35573 1532 aa12.93□□□□□ -0.34
USP48-207ENST00000471752 REREQ9P2R6 1566 aa12.91□□□□□ -0.34
USP48-207ENST00000471752 ZMYM3Q14202 1370 aa12.91□□□□□ -0.34
USP48-207ENST00000471752 NCOA2Q15596 1464 aa12.91□□□□□ -0.34
USP48-207ENST00000471752 ESF1Q9H501 851 aaKnown RBP12.9□□□□□ -0.34
USP48-207ENST00000471752 ATP7AQ04656 1500 aa12.89□□□□□ -0.35
USP48-207ENST00000471752 CERKQ8TCT0 537 aa12.89□□□□□ -0.35
USP48-207ENST00000471752 A2MP01023 1474 aa12.89□□□□□ -0.35
USP48-207ENST00000471752 FBXO31Q5XUX0 539 aaPredicted RBP12.88□□□□□ -0.35
USP48-207ENST00000471752 EHBP1L1Q8N3D4 1523 aa12.88□□□□□ -0.35
USP48-207ENST00000471752 NCKAP5LQ9HCH0 1330 aa12.88□□□□□ -0.35
USP48-207ENST00000471752 C3P01024 1663 aa12.87□□□□□ -0.35
USP48-207ENST00000471752 SUPT6HQ7KZ85 1726 aaKnown RBP12.87□□□□□ -0.35
USP48-207ENST00000471752 UHRF1BP1Q6BDS2 1440 aa12.87□□□□□ -0.35
USP48-207ENST00000471752 VPS8Q8N3P4 1428 aa12.87□□□□□ -0.35
USP48-207ENST00000471752 PLEKHH2Q8IVE3 1493 aa12.86□□□□□ -0.35
USP48-207ENST00000471752 STRCQ7RTU9 1775 aa12.86□□□□□ -0.35
USP48-207ENST00000471752 INO80Q9ULG1 1556 aaPredicted RBP12.86□□□□□ -0.35
USP48-207ENST00000471752 DHX29Q7Z478 1369 aaKnown RBP12.85□□□□□ -0.35
USP48-207ENST00000471752 KIF3BO15066 747 aa12.85□□□□□ -0.35
USP48-207ENST00000471752 LRRC9Q6ZRR7 1453 aa12.85□□□□□ -0.35
USP48-207ENST00000471752 PLXNC1O60486 1568 aa12.84□□□□□ -0.35
USP48-207ENST00000471752 CAMSAP2Q08AD1 1489 aa12.84□□□□□ -0.35
USP48-207ENST00000471752 PREX1Q8TCU6 1659 aa12.83□□□□□ -0.35
USP48-207ENST00000471752 PTPRKQ15262 1439 aa12.83□□□□□ -0.36
USP48-207ENST00000471752 CNTLNQ9NXG0 1405 aa12.82□□□□□ -0.36
USP48-207ENST00000471752 SETD1BQ9UPS6 1966 aaKnown RBP12.81□□□□□ -0.36
USP48-207ENST00000471752 RTEL1-TNFRSF6BF6WH68 1400 aa12.81□□□□□ -0.36
USP48-207ENST00000471752 CLTCQ00610 1675 aaKnown RBP12.8□□□□□ -0.36
USP48-207ENST00000471752 CCDC141Q6ZP82 1450 aa12.79□□□□□ -0.36
USP48-207ENST00000471752 NCOA1Q15788 1441 aa12.79□□□□□ -0.36
USP48-207ENST00000471752 TSPY4P0CV99 314 aa12.78□□□□□ -0.36
USP48-207ENST00000471752 TSPY10P0CW01 314 aa12.78□□□□□ -0.36
USP48-207ENST00000471752 DMRT2Q9Y5R5 561 aa12.78□□□□□ -0.36
USP48-207ENST00000471752 NPATQ14207 1427 aa12.78□□□□□ -0.36
USP48-207ENST00000471752 WASHC2CQ9Y4E1 1318 aa12.77□□□□□ -0.37
USP48-207ENST00000471752 RSPH4AQ5TD94 716 aa12.76□□□□□ -0.37
USP48-207ENST00000471752 ZNF335Q9H4Z2 1342 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms