RNA–Protein interactions for RNA: ENST00000471694.1

CD47-204, Transcript of CD47 molecule, humanhuman

TSL 1 (best)

Gene CD47, Length 6,796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-204ENST00000471694 FAM69CQ0P6D2 419 aa11.07□□□□□ -0.64
CD47-204ENST00000471694 DCAF11Q8TEB1 546 aa11.07□□□□□ -0.64
CD47-204ENST00000471694 KIF3BO15066 747 aa11.07□□□□□ -0.64
CD47-204ENST00000471694 FBXW7Q969H0 707 aa11.06□□□□□ -0.64
CD47-204ENST00000471694 TMF1P82094 1093 aa11.06□□□□□ -0.64
CD47-204ENST00000471694 FKBP8Q14318 412 aa11.06□□□□□ -0.64
CD47-204ENST00000471694 FRAT1Q92837 279 aaPredicted RBP11.06□□□□□ -0.64
CD47-204ENST00000471694 CTDP1Q9Y5B0 961 aaPredicted RBP11.05□□□□□ -0.64
CD47-204ENST00000471694 GNL2Q13823 731 aaKnown RBP11.05□□□□□ -0.64
CD47-204ENST00000471694 AMPHP49418 695 aa11.05□□□□□ -0.64
CD47-204ENST00000471694 CUX2O14529 1486 aa11.05□□□□□ -0.64
CD47-204ENST00000471694 CHMP4BQ9H444 224 aaKnown RBP11.05□□□□□ -0.64
CD47-204ENST00000471694 VPS53Q5VIR6 699 aa11.04□□□□□ -0.64
CD47-204ENST00000471694 TRIM34Q9BYJ4 488 aa11.04□□□□□ -0.64
CD47-204ENST00000471694 ATF3P18847 181 aa11.04□□□□□ -0.64
CD47-204ENST00000471694 PIP4K2BP78356 416 aa11.03□□□□□ -0.64
CD47-204ENST00000471694 EIF5BO60841 1220 aaKnown RBP11.03□□□□□ -0.64
CD47-204ENST00000471694 CNKSR2Q8WXI2 1034 aa11.02□□□□□ -0.64
CD47-204ENST00000471694 GOLGA3Q08378 1498 aa11.02□□□□□ -0.65
CD47-204ENST00000471694 SPAG9O60271 1321 aaKnown RBP11□□□□□ -0.65
CD47-204ENST00000471694 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
CD47-204ENST00000471694 GOLGA6L22H0YM25 854 aa11□□□□□ -0.65
CD47-204ENST00000471694 SOGA1O94964 1423 aa11□□□□□ -0.65
CD47-204ENST00000471694 CARMIL1Q5VZK9 1371 aa10.99□□□□□ -0.65
CD47-204ENST00000471694 NUTM2BA6NNL0 878 aaPredicted RBP10.98□□□□□ -0.65
CD47-204ENST00000471694 NUTM2EB1AL46 878 aaPredicted RBP10.98□□□□□ -0.65
CD47-204ENST00000471694 NUTM2AQ8IVF1 878 aaPredicted RBP10.98□□□□□ -0.65
CD47-204ENST00000471694 BECN1Q14457 450 aa10.98□□□□□ -0.65
CD47-204ENST00000471694 RAD21O60216 631 aa10.98□□□□□ -0.65
CD47-204ENST00000471694 GTF3C3Q9Y5Q9 886 aa10.98□□□□□ -0.65
CD47-204ENST00000471694 SMARCA2P51531 1590 aa10.98□□□□□ -0.65
CD47-204ENST00000471694 PSME1Q06323 249 aa10.97□□□□□ -0.65
CD47-204ENST00000471694 TDRD9Q8NDG6 1382 aaKnown RBP10.97□□□□□ -0.65
CD47-204ENST00000471694 MS4A1P11836 297 aa10.97□□□□□ -0.65
CD47-204ENST00000471694 C1orf141Q5JVX7 400 aa10.97□□□□□ -0.65
CD47-204ENST00000471694 CEP164Q9UPV0 1460 aa10.96□□□□□ -0.65
CD47-204ENST00000471694 IRX6P78412 446 aaPredicted RBP10.96□□□□□ -0.65
CD47-204ENST00000471694 NBR1Q14596 966 aa10.96□□□□□ -0.66
CD47-204ENST00000471694 APBB1O00213 710 aa10.96□□□□□ -0.66
CD47-204ENST00000471694 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.96□□□□□ -0.66
CD47-204ENST00000471694 NOL10Q9BSC4 688 aaKnown RBP10.95□□□□□ -0.66
CD47-204ENST00000471694 HNRNPMP52272 730 aaKnown RBP eCLIP10.95□□□□□ -0.66
CD47-204ENST00000471694 TCEAL9Q9UHQ7 104 aa10.95□□□□□ -0.66
CD47-204ENST00000471694 ANP32EQ9BTT0 268 aa10.94□□□□□ -0.66
CD47-204ENST00000471694 MARCH6O60337 910 aa10.94□□□□□ -0.66
CD47-204ENST00000471694 CHMP4AQ9BY43 222 aa10.94□□□□□ -0.66
CD47-204ENST00000471694 GOLGA6L6A8MZA4 724 aa10.94□□□□□ -0.66
CD47-204ENST00000471694 STK31Q9BXU1 1019 aa10.94□□□□□ -0.66
CD47-204ENST00000471694 PTMAP06454 111 aaKnown RBP10.93□□□□□ -0.66
CD47-204ENST00000471694 TRIM44Q96DX7 344 aaPredicted RBP10.93□□□□□ -0.66
CD47-204ENST00000471694 TOMM22Q9NS69 142 aa10.93□□□□□ -0.66
CD47-204ENST00000471694 TERF2IPQ9NYB0 399 aa10.93□□□□□ -0.66
CD47-204ENST00000471694 FHAD1B1AJZ9 1412 aa10.92□□□□□ -0.66
CD47-204ENST00000471694 MCCP23508 829 aa10.92□□□□□ -0.66
CD47-204ENST00000471694 GOLGA6L4A6NEF3 574 aa10.92□□□□□ -0.66
CD47-204ENST00000471694 PLCB2Q00722 1185 aa10.92□□□□□ -0.66
CD47-204ENST00000471694 CALD1Q05682 793 aaKnown RBP10.92□□□□□ -0.66
CD47-204ENST00000471694 TTC5Q8N0Z6 440 aa10.91□□□□□ -0.66
CD47-204ENST00000471694 NGEFQ8N5V2 710 aa10.91□□□□□ -0.66
CD47-204ENST00000471694 KIAA1211Q6ZU35 1233 aa10.91□□□□□ -0.66
CD47-204ENST00000471694 EEA1Q15075 1411 aa10.9□□□□□ -0.66
CD47-204ENST00000471694 PDE4CQ08493 712 aa10.9□□□□□ -0.66
CD47-204ENST00000471694 GPATCH3Q96I76 525 aa10.9□□□□□ -0.66
CD47-204ENST00000471694 PKD2Q13563 968 aa10.9□□□□□ -0.66
CD47-204ENST00000471694 JPH4Q96JJ6 628 aa10.9□□□□□ -0.66
CD47-204ENST00000471694 U2AF1L5P0DN76 240 aaPredicted RBP10.9□□□□□ -0.67
CD47-204ENST00000471694 U2AF1Q01081 240 aaKnown RBP eCLIP10.9□□□□□ -0.67
CD47-204ENST00000471694 KIAA2012Q0VF49 1180 aa10.9□□□□□ -0.67
CD47-204ENST00000471694 SAMD1Q6SPF0 538 aaPredicted RBP10.9□□□□□ -0.67
CD47-204ENST00000471694 CCAR1Q8IX12 1150 aaKnown RBP10.9□□□□□ -0.67
CD47-204ENST00000471694 AMOTL1Q8IY63 956 aa10.9□□□□□ -0.67
CD47-204ENST00000471694 WASHC2AQ641Q2 1341 aa10.9□□□□□ -0.67
CD47-204ENST00000471694 EIF3AQ14152 1382 aaKnown RBP10.89□□□□□ -0.67
CD47-204ENST00000471694 RBM33Q96EV2 1170 aaKnown RBP10.89□□□□□ -0.67
CD47-204ENST00000471694 ANO8Q9HCE9 1232 aaPredicted RBP10.89□□□□□ -0.67
CD47-204ENST00000471694 DDRGK1Q96HY6 314 aa10.89□□□□□ -0.67
CD47-204ENST00000471694 BAZ1AQ9NRL2 1556 aaPredicted RBP10.89□□□□□ -0.67
CD47-204ENST00000471694 VPS37DQ86XT2 251 aa10.88□□□□□ -0.67
CD47-204ENST00000471694 RASSF8Q8NHQ8 419 aa10.88□□□□□ -0.67
CD47-204ENST00000471694 HSP90AB1P08238 724 aaKnown RBP10.88□□□□□ -0.67
CD47-204ENST00000471694 HDAC5Q9UQL6 1122 aa10.86□□□□□ -0.67
CD47-204ENST00000471694 ROCK2O75116 1388 aaKnown RBP10.86□□□□□ -0.67
CD47-204ENST00000471694 SLC4A10Q6U841 1118 aa10.86□□□□□ -0.67
CD47-204ENST00000471694 HSP90B1P14625 803 aaKnown RBP10.85□□□□□ -0.67
CD47-204ENST00000471694 USP35Q9P2H5 1018 aa10.85□□□□□ -0.67
CD47-204ENST00000471694 NUP155O75694 1391 aa10.85□□□□□ -0.67
CD47-204ENST00000471694 ANKRD30AQ9BXX3 1397 aa10.85□□□□□ -0.67
CD47-204ENST00000471694 CHAF1AQ13111 956 aaPredicted RBP10.85□□□□□ -0.67
CD47-204ENST00000471694 TRAK1Q9UPV9 953 aa10.84□□□□□ -0.67
CD47-204ENST00000471694 CEP162Q5TB80 1403 aa10.84□□□□□ -0.67
CD47-204ENST00000471694 PAXIP1Q6ZW49 1069 aaPredicted RBP10.84□□□□□ -0.67
CD47-204ENST00000471694 RGS3P49796 1198 aa10.83□□□□□ -0.68
CD47-204ENST00000471694 PROSER2Q86WR7 435 aaPredicted RBP10.83□□□□□ -0.68
CD47-204ENST00000471694 WWC1Q8IX03 1113 aa10.83□□□□□ -0.68
CD47-204ENST00000471694 COG3Q96JB2 828 aa10.83□□□□□ -0.68
CD47-204ENST00000471694 NRDCO43847 1150 aa10.83□□□□□ -0.68
CD47-204ENST00000471694 IPO8O15397 1037 aaKnown RBP10.83□□□□□ -0.68
CD47-204ENST00000471694 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.83□□□□□ -0.68
CD47-204ENST00000471694 PTPRGP23470 1445 aa10.82□□□□□ -0.68
CD47-204ENST00000471694 DNTTIP2Q5QJE6 756 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms