RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 KIF3CO14782 793 aa10.29□□□□□ -0.76
VPS13A-210ENST00000471439 POTEGQ6S5H5 508 aa10.29□□□□□ -0.76
VPS13A-210ENST00000471439 ABCC9O60706 1549 aa10.28□□□□□ -0.76
VPS13A-210ENST00000471439 RYDENQ9NUL5 291 aaKnown RBP10.26□□□□□ -0.77
VPS13A-210ENST00000471439 CADPS2Q86UW7 1296 aa10.25□□□□□ -0.77
VPS13A-210ENST00000471439 SNPHO15079 494 aa10.23□□□□□ -0.77
VPS13A-210ENST00000471439 TMC2Q8TDI7 906 aa10.23□□□□□ -0.77
VPS13A-210ENST00000471439 PCDH10Q9P2E7 1040 aa10.23□□□□□ -0.77
VPS13A-210ENST00000471439 PAXIP1Q6ZW49 1069 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-210ENST00000471439 MARVELD3Q96A59 401 aa10.22□□□□□ -0.77
VPS13A-210ENST00000471439 CFAP44Q96MT7 982 aa10.22□□□□□ -0.77
VPS13A-210ENST00000471439 NCKAP5LQ9HCH0 1330 aa10.22□□□□□ -0.77
VPS13A-210ENST00000471439 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.19□□□□□ -0.78
VPS13A-210ENST00000471439 DSG2Q14126 1118 aa10.18□□□□□ -0.78
VPS13A-210ENST00000471439 SPRYD3Q8NCJ5 442 aa10.18□□□□□ -0.78
VPS13A-210ENST00000471439 CRISPLD2Q9H0B8 497 aa10.18□□□□□ -0.78
VPS13A-210ENST00000471439 GPHNQ9NQX3 736 aaPredicted RBP10.18□□□□□ -0.78
VPS13A-210ENST00000471439 DOK7Q18PE1 504 aa10.17□□□□□ -0.78
VPS13A-210ENST00000471439 KHSRPQ92945 711 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS13A-210ENST00000471439 PLPP6Q8IY26 295 aa10.15□□□□□ -0.78
VPS13A-210ENST00000471439 ZNF710Q8N1W2 664 aa10.15□□□□□ -0.78
VPS13A-210ENST00000471439 FOXK1P85037 733 aa10.14□□□□□ -0.79
VPS13A-210ENST00000471439 EMP3P54852 163 aa10.12□□□□□ -0.79
VPS13A-210ENST00000471439 ARSIQ5FYB1 569 aa10.12□□□□□ -0.79
VPS13A-210ENST00000471439 GPR153Q6NV75 609 aa10.12□□□□□ -0.79
VPS13A-210ENST00000471439 POTEB3A0JP26 581 aa10.11□□□□□ -0.79
VPS13A-210ENST00000471439 HOXB1P14653 301 aaPredicted RBP10.11□□□□□ -0.79
VPS13A-210ENST00000471439 PPP1R15BQ5SWA1 713 aa10.11□□□□□ -0.79
VPS13A-210ENST00000471439 POTEBQ6S5H4 581 aa10.11□□□□□ -0.79
VPS13A-210ENST00000471439 LARP6Q9BRS8 491 aaKnown RBP10.11□□□□□ -0.79
VPS13A-210ENST00000471439 FAM205CA6NFA0 338 aa10.08□□□□□ -0.8
VPS13A-210ENST00000471439 RIMBP2O15034 1052 aa10.08□□□□□ -0.8
VPS13A-210ENST00000471439 PCDHGA4Q9Y5G9 962 aa10.08□□□□□ -0.8
VPS13A-210ENST00000471439 PDE4AP27815 886 aa10.07□□□□□ -0.8
VPS13A-210ENST00000471439 DDX27Q96GQ7 796 aaKnown RBP10.07□□□□□ -0.8
VPS13A-210ENST00000471439 NUDT7P0C024 238 aa10.06□□□□□ -0.8
VPS13A-210ENST00000471439 MFSD10Q14728 455 aa10.06□□□□□ -0.8
VPS13A-210ENST00000471439 UPF1Q92900 1129 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS13A-210ENST00000471439 HS3ST6Q96QI5 342 aa10.06□□□□□ -0.8
VPS13A-210ENST00000471439 SLC34A2O95436 690 aa10.05□□□□□ -0.8
VPS13A-210ENST00000471439 ZSWIM6Q9HCJ5 1215 aa10.05□□□□□ -0.8
VPS13A-210ENST00000471439 TSHZ2Q9NRE2 1034 aa10.05□□□□□ -0.8
VPS13A-210ENST00000471439 PLSCR2Q9NRY7 297 aa10.03□□□□□ -0.8
VPS13A-210ENST00000471439 CDAN1Q8IWY9 1227 aa10.02□□□□□ -0.81
VPS13A-210ENST00000471439 PTCD2Q8WV60 388 aaKnown RBP10.02□□□□□ -0.81
VPS13A-210ENST00000471439 VARS2Q5ST30 1063 aaKnown RBP10.01□□□□□ -0.81
VPS13A-210ENST00000471439 EMILIN3Q9NT22 766 aa10.01□□□□□ -0.81
VPS13A-210ENST00000471439 ERBB3P21860 1342 aa10.01□□□□□ -0.81
VPS13A-210ENST00000471439 OXER1Q8TDS5 423 aa10□□□□□ -0.81
VPS13A-210ENST00000471439 LHX6Q9UPM6 363 aa9.99□□□□□ -0.81
VPS13A-210ENST00000471439 KDM4FA0A1W2PPD8 638 aa9.98□□□□□ -0.81
VPS13A-210ENST00000471439 PLCB2Q00722 1185 aa9.98□□□□□ -0.81
VPS13A-210ENST00000471439 ZNF316A6NFI3 1004 aaPredicted RBP9.97□□□□□ -0.81
VPS13A-210ENST00000471439 KRTAP3-3Q9BYR6 98 aa9.94□□□□□ -0.82
VPS13A-210ENST00000471439 KRTAP3-2Q9BYR7 98 aa9.94□□□□□ -0.82
VPS13A-210ENST00000471439 CAMK2BQ13554 666 aa9.93□□□□□ -0.82
VPS13A-210ENST00000471439 DPYSL4O14531 572 aa9.91□□□□□ -0.82
VPS13A-210ENST00000471439 POTEEQ6S8J3 1075 aa9.89□□□□□ -0.83
VPS13A-210ENST00000471439 TBC1D12O60347 775 aa9.88□□□□□ -0.83
VPS13A-210ENST00000471439 EVI5O60447 810 aa9.88□□□□□ -0.83
VPS13A-210ENST00000471439 MAP3K9P80192 1104 aa9.87□□□□□ -0.83
VPS13A-210ENST00000471439 HAP1P54257 671 aaPredicted RBP9.86□□□□□ -0.83
VPS13A-210ENST00000471439 ZNF687Q8N1G0 1237 aa9.86□□□□□ -0.83
VPS13A-210ENST00000471439 AXIN2Q9Y2T1 843 aa9.86□□□□□ -0.83
VPS13A-210ENST00000471439 E2F4Q16254 413 aa9.84□□□□□ -0.83
VPS13A-210ENST00000471439 WDR70Q9NW82 654 aa9.84□□□□□ -0.83
VPS13A-210ENST00000471439 SLC24A1O60721 1099 aa9.83□□□□□ -0.84
VPS13A-210ENST00000471439 ZNF454Q8N9F8 522 aa9.82□□□□□ -0.84
VPS13A-210ENST00000471439 KCNV2Q8TDN2 545 aa9.81□□□□□ -0.84
VPS13A-210ENST00000471439 ANO8Q9HCE9 1232 aaPredicted RBP9.81□□□□□ -0.84
VPS13A-210ENST00000471439 PSEN2P49810 448 aa9.79□□□□□ -0.84
VPS13A-210ENST00000471439 FOSBP53539 338 aa9.79□□□□□ -0.84
VPS13A-210ENST00000471439 PPP4R3BQ5MIZ7 849 aa9.79□□□□□ -0.84
VPS13A-210ENST00000471439 SPNS2Q8IVW8 549 aa9.78□□□□□ -0.84
VPS13A-210ENST00000471439 PDIA6Q15084 440 aa9.77□□□□□ -0.85
VPS13A-210ENST00000471439 DMRTA1Q5VZB9 504 aa9.77□□□□□ -0.85
VPS13A-210ENST00000471439 DDX12PQ92771 950 aa9.77□□□□□ -0.85
VPS13A-210ENST00000471439 JPH4Q96JJ6 628 aa9.77□□□□□ -0.85
VPS13A-210ENST00000471439 KDM2AQ9Y2K7 1162 aa9.77□□□□□ -0.85
VPS13A-210ENST00000471439 PCDHGA10Q9Y5H3 936 aa9.77□□□□□ -0.85
VPS13A-210ENST00000471439 PSDA5PKW4 1024 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-210ENST00000471439 ADAM33Q9BZ11 813 aa9.76□□□□□ -0.85
VPS13A-210ENST00000471439 NISCHQ9Y2I1 1504 aa9.76□□□□□ -0.85
VPS13A-210ENST00000471439 LSM11P83369 360 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS13A-210ENST00000471439 KCNK17Q96T54 332 aa9.75□□□□□ -0.85
VPS13A-210ENST00000471439 ANKRD13DQ6ZTN6 518 aa9.74□□□□□ -0.85
VPS13A-210ENST00000471439 MMRN1Q13201 1228 aa9.73□□□□□ -0.85
VPS13A-210ENST00000471439 ARIH1Q9Y4X5 557 aaPredicted RBP9.73□□□□□ -0.85
VPS13A-210ENST00000471439 ARHGAP33O14559 1287 aa9.72□□□□□ -0.85
VPS13A-210ENST00000471439 PBX2P40425 430 aa9.72□□□□□ -0.85
VPS13A-210ENST00000471439 PRIM1P49642 420 aaKnown RBP9.72□□□□□ -0.85
VPS13A-210ENST00000471439 ZDHHC16Q969W1 377 aa9.71□□□□□ -0.86
VPS13A-210ENST00000471439 BCL2L12Q9HB09 334 aa9.7□□□□□ -0.86
VPS13A-210ENST00000471439 PHF14O94880 888 aa9.69□□□□□ -0.86
VPS13A-210ENST00000471439 NBR1Q14596 966 aa9.69□□□□□ -0.86
VPS13A-210ENST00000471439 RBM33Q96EV2 1170 aaKnown RBP9.69□□□□□ -0.86
VPS13A-210ENST00000471439 GRXCR2A6NFK2 248 aa9.68□□□□□ -0.86
VPS13A-210ENST00000471439 PTGER2P43116 358 aa9.68□□□□□ -0.86
VPS13A-210ENST00000471439 SPDYE16A6NNV3 312 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-210ENST00000471439 COL9A1P20849 921 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms