RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 SCAPERQ9BY12 1400 aa15.01□□□□□ -0.01
SF3A1-206ENST00000471037 MYO5CQ9NQX4 1742 aa14.98□□□□□ -0.01
SF3A1-206ENST00000471037 UBTFP17480 764 aaKnown RBP14.97□□□□□ -0.01
SF3A1-206ENST00000471037 KIF14Q15058 1648 aa14.96□□□□□ -0.01
SF3A1-206ENST00000471037 EFCAB2Q5VUJ9 269 aa14.96□□□□□ -0.01
SF3A1-206ENST00000471037 CDK11AQ9UQ88 783 aaPredicted RBP14.96□□□□□ -0.01
SF3A1-206ENST00000471037 ARHGEF12Q9NZN5 1544 aa14.96□□□□□ -0.02
SF3A1-206ENST00000471037 FER1L4A9Z1Z3 1794 aa14.96□□□□□ -0.02
SF3A1-206ENST00000471037 ATP10AO60312 1499 aa14.95□□□□□ -0.02
SF3A1-206ENST00000471037 TROQ12816 1431 aaPredicted RBP14.95□□□□□ -0.02
SF3A1-206ENST00000471037 C9orf84Q5VXU9 1444 aa14.95□□□□□ -0.02
SF3A1-206ENST00000471037 ZNF518AQ6AHZ1 1483 aa14.95□□□□□ -0.02
SF3A1-206ENST00000471037 KDM5CP41229 1560 aa14.94□□□□□ -0.02
SF3A1-206ENST00000471037 CLIP1P30622 1438 aa14.92□□□□□ -0.02
SF3A1-206ENST00000471037 ATP1B4Q9UN42 357 aaPredicted RBP14.92□□□□□ -0.02
SF3A1-206ENST00000471037 HSPA2P54652 639 aa14.91□□□□□ -0.02
SF3A1-206ENST00000471037 MLECQ14165 292 aa14.91□□□□□ -0.02
SF3A1-206ENST00000471037 LRRIQ1Q96JM4 1722 aa14.91□□□□□ -0.02
SF3A1-206ENST00000471037 ARHGAP5Q13017 1502 aa14.91□□□□□ -0.02
SF3A1-206ENST00000471037 REREQ9P2R6 1566 aa14.9□□□□□ -0.02
SF3A1-206ENST00000471037 EHMT2Q96KQ7 1210 aa14.89□□□□□ -0.03
SF3A1-206ENST00000471037 PREX1Q8TCU6 1659 aa14.87□□□□□ -0.03
SF3A1-206ENST00000471037 DIP2CQ9Y2E4 1556 aa14.87□□□□□ -0.03
SF3A1-206ENST00000471037 PLPPR3Q6T4P5 718 aa14.87□□□□□ -0.03
SF3A1-206ENST00000471037 CCDC18Q5T9S5 1454 aa14.87□□□□□ -0.03
SF3A1-206ENST00000471037 CDC42BPBQ9Y5S2 1711 aa14.86□□□□□ -0.03
SF3A1-206ENST00000471037 CASKIN1Q8WXD9 1431 aa14.86□□□□□ -0.03
SF3A1-206ENST00000471037 PREX2Q70Z35 1606 aa14.86□□□□□ -0.03
SF3A1-206ENST00000471037 AFAP1Q8N556 730 aa14.86□□□□□ -0.03
SF3A1-206ENST00000471037 MLH3Q9UHC1 1453 aa14.86□□□□□ -0.03
SF3A1-206ENST00000471037 ABCC1P33527 1531 aa14.85□□□□□ -0.03
SF3A1-206ENST00000471037 ABCA6Q8N139 1617 aa14.84□□□□□ -0.03
SF3A1-206ENST00000471037 AGLP35573 1532 aa14.83□□□□□ -0.04
SF3A1-206ENST00000471037 TRAPPC8Q9Y2L5 1435 aa14.82□□□□□ -0.04
SF3A1-206ENST00000471037 ITSN2Q9NZM3 1697 aa14.81□□□□□ -0.04
SF3A1-206ENST00000471037 CEBPAP49715 358 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-206ENST00000471037 CERKQ8TCT0 537 aa14.8□□□□□ -0.04
SF3A1-206ENST00000471037 UHRF1BP1Q6BDS2 1440 aa14.8□□□□□ -0.04
SF3A1-206ENST00000471037 FYCO1Q9BQS8 1478 aa14.8□□□□□ -0.04
SF3A1-206ENST00000471037 CDC42BPAQ5VT25 1732 aa14.78□□□□□ -0.04
SF3A1-206ENST00000471037 KIDINS220Q9ULH0 1771 aa14.78□□□□□ -0.04
SF3A1-206ENST00000471037 MYT1LQ9UL68 1186 aa14.77□□□□□ -0.05
SF3A1-206ENST00000471037 STRCQ7RTU9 1775 aa14.77□□□□□ -0.05
SF3A1-206ENST00000471037 C3P01024 1663 aa14.77□□□□□ -0.05
SF3A1-206ENST00000471037 SETD1BQ9UPS6 1966 aaKnown RBP14.76□□□□□ -0.05
SF3A1-206ENST00000471037 DMRT2Q9Y5R5 561 aa14.75□□□□□ -0.05
SF3A1-206ENST00000471037 SAMD9LQ8IVG5 1584 aa14.75□□□□□ -0.05
SF3A1-206ENST00000471037 CNTLNQ9NXG0 1405 aa14.75□□□□□ -0.05
SF3A1-206ENST00000471037 GPATCH8Q9UKJ3 1502 aaKnown RBP14.73□□□□□ -0.05
SF3A1-206ENST00000471037 SYCP2Q9BX26 1530 aa14.72□□□□□ -0.05
SF3A1-206ENST00000471037 PTPRTO14522 1441 aa14.72□□□□□ -0.05
SF3A1-206ENST00000471037 ESF1Q9H501 851 aaKnown RBP14.71□□□□□ -0.05
SF3A1-206ENST00000471037 MROH2AA6NES4 1674 aa14.71□□□□□ -0.06
SF3A1-206ENST00000471037 KIAA1107Q9UPP5 1409 aa14.7□□□□□ -0.06
SF3A1-206ENST00000471037 NPATQ14207 1427 aa14.69□□□□□ -0.06
SF3A1-206ENST00000471037 PLEKHH2Q8IVE3 1493 aa14.69□□□□□ -0.06
SF3A1-206ENST00000471037 PLXNC1O60486 1568 aa14.68□□□□□ -0.06
SF3A1-206ENST00000471037 INO80Q9ULG1 1556 aaPredicted RBP14.68□□□□□ -0.06
SF3A1-206ENST00000471037 ATP7AQ04656 1500 aa14.68□□□□□ -0.06
SF3A1-206ENST00000471037 SPAG9O60271 1321 aaKnown RBP14.67□□□□□ -0.06
SF3A1-206ENST00000471037 ZNF777Q9ULD5 760 aaPredicted RBP14.67□□□□□ -0.06
SF3A1-206ENST00000471037 NCOA1Q15788 1441 aa14.66□□□□□ -0.06
SF3A1-206ENST00000471037 CCNB3Q8WWL7 1395 aa14.65□□□□□ -0.06
SF3A1-206ENST00000471037 HNRNPMP52272 730 aaKnown RBP eCLIP14.65□□□□□ -0.06
SF3A1-206ENST00000471037 ZMYM3Q14202 1370 aa14.64□□□□□ -0.07
SF3A1-206ENST00000471037 LTBP4Q8N2S1 1624 aa14.64□□□□□ -0.07
SF3A1-206ENST00000471037 CFDP1Q9UEE9 299 aaPredicted RBP14.64□□□□□ -0.07
SF3A1-206ENST00000471037 SUPT6HQ7KZ85 1726 aaKnown RBP14.63□□□□□ -0.07
SF3A1-206ENST00000471037 A2MP01023 1474 aa14.63□□□□□ -0.07
SF3A1-206ENST00000471037 IQSEC2Q5JU85 1478 aa14.63□□□□□ -0.07
SF3A1-206ENST00000471037 MTUS2Q5JR59 1369 aa14.63□□□□□ -0.07
SF3A1-206ENST00000471037 CAMSAP1Q5T5Y3 1602 aa14.62□□□□□ -0.07
SF3A1-206ENST00000471037 ZNF142P52746 1687 aaPredicted RBP14.61□□□□□ -0.07
SF3A1-206ENST00000471037 EHBP1L1Q8N3D4 1523 aa14.61□□□□□ -0.07
SF3A1-206ENST00000471037 TIAM1Q13009 1591 aa14.61□□□□□ -0.07
SF3A1-206ENST00000471037 CLTCQ00610 1675 aaKnown RBP14.61□□□□□ -0.07
SF3A1-206ENST00000471037 ADGBQ8N7X0 1667 aa14.6□□□□□ -0.07
SF3A1-206ENST00000471037 MYO3AQ8NEV4 1616 aa14.59□□□□□ -0.07
SF3A1-206ENST00000471037 PTPRKQ15262 1439 aa14.59□□□□□ -0.07
SF3A1-206ENST00000471037 PLA2R1Q13018 1463 aa14.59□□□□□ -0.07
SF3A1-206ENST00000471037 MBD5Q9P267 1494 aa14.59□□□□□ -0.07
SF3A1-206ENST00000471037 RTEL1-TNFRSF6BF6WH68 1400 aa14.58□□□□□ -0.07
SF3A1-206ENST00000471037 CEP162Q5TB80 1403 aa14.58□□□□□ -0.07
SF3A1-206ENST00000471037 PPP6R1Q9UPN7 881 aa14.58□□□□□ -0.08
SF3A1-206ENST00000471037 CEP170BQ9Y4F5 1589 aaPredicted RBP14.58□□□□□ -0.08
SF3A1-206ENST00000471037 TCOF1Q13428 1488 aaKnown RBP14.56□□□□□ -0.08
SF3A1-206ENST00000471037 GGT6Q6P531 493 aa14.55□□□□□ -0.08
SF3A1-206ENST00000471037 ZNF644Q9H582 1327 aaPredicted RBP14.55□□□□□ -0.08
SF3A1-206ENST00000471037 PKD2Q13563 968 aa14.54□□□□□ -0.08
SF3A1-206ENST00000471037 FAM135AQ9P2D6 1515 aa14.53□□□□□ -0.08
SF3A1-206ENST00000471037 DHX29Q7Z478 1369 aaKnown RBP14.53□□□□□ -0.08
SF3A1-206ENST00000471037 DISP3Q9P2K9 1392 aa14.53□□□□□ -0.08
SF3A1-206ENST00000471037 NCKAP5LQ9HCH0 1330 aa14.52□□□□□ -0.08
SF3A1-206ENST00000471037 A2ML1A8K2U0 1454 aa14.51□□□□□ -0.09
SF3A1-206ENST00000471037 CCDC141Q6ZP82 1450 aa14.51□□□□□ -0.09
SF3A1-206ENST00000471037 NCOA2Q15596 1464 aa14.5□□□□□ -0.09
SF3A1-206ENST00000471037 ZNF335Q9H4Z2 1342 aaPredicted RBP14.5□□□□□ -0.09
SF3A1-206ENST00000471037 SPATA31D1Q6ZQQ2 1576 aa14.5□□□□□ -0.09
SF3A1-206ENST00000471037 CAMSAP2Q08AD1 1489 aa14.5□□□□□ -0.09
SF3A1-206ENST00000471037 DNMT1P26358 1616 aaKnown RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms